Bicluster

Bicluster Motifs

Bicluster Genes

• Rv0796
• Rv1369c
• Rv1756c
• Rv1764
• Rv2106
• Rv2167c
• Rv2355
• Rv2479c
• Rv2649
• Rv2814c
• Rv3187
• Rv3326
• Rv3380c
• Rv3475

Bicluster Conditions

• High.iron.wt.vs.low.iron.wt.1a
• High.iron.wt.vs.low.iron.wt.1b
• High.iron.wt.vs.low.iron.wt.2a
• High.iron.wt.vs.low.iron.wt.2b
• High.iron.wt.vs.low.iron.wt.3a
• High.iron.wt.vs.low.iron.wt.3b
• H37Rv.hypoxia.2hr.rep.3
• H37Rv.hypoxia.2hr.rep.4
• NRP.Day6..3
• NRP.Day12..3
• NRP.Day14..3
• NRP.Day14..5
• NRP.Day30..1
• pH4.8vspH6.8..2h.
• pH4.8vspH6.8..2h.A
• pH4.8vspH6.8..2h.B
• pH4.8vspH6.8..4h.A
• pH4.8vspH6.8..5h.
• pH4.8vspH6.8..5.5h.
• pH4.8vspH6.8..6h.
• pH4.8vspH6.8..7h.
• pH5.2vspH6.8..2h.
• pH5.2vspH6.8..5h.
• pH5.2vspH6.8..5.5h.
• pH5.2vspH6.8..10.5h.
• pH5.2vspH6.8..11h.
• pH5.2vspH6.8..16h.
• pH5.6vspH6.8..2h.
• pH5.6vspH6.8..2h.A
• pH5.6vspH6.8..4h.
• pH5.6vspH6.8..4h.B
• pH5.6vspH6.8..5h.
• pH5.6vspH6.8..7h.
• pH5.6vspH6.8..11h.
• pH5.6vspH6.8..16h.
• X4mM.H2O2vsctrl..1h.
• X4mM.H2O2vsctrl..2h.
• X4mM.H2O2vsctrl..2h.A
• X4mM.H2O2.ctrl..2h...1
• X4mM.H2O2.ctrl..2h...2
• X4mM.H2O2.ctrl..4h...2
• X4mM.H2O2vsctrl..4h.A
• X20mJ.UVvsctrl..6h.
• UV.20J.vs.ctrl.8h.1
• X25J.UV.ctrl..2h.
• X40mJ.UV.ctrl..6h.
• UV.40J.vs.ctrl.8h.1
• UV.40J.vs.ctrl.12h.1
• UV.60J.vs.ctrl.6h.1
• H37Rv.hypoxia.4hr.rep.3
• H37Rv.hypoxia.4hr.rep.4
• H37Rv.hypoxia.4hr.rep.5
• H37Rv.hypoxia.4hr.rep.7
• H37Rv.hypoxia.8hr.rep.2
• H37Rv.hypoxia.8hr.rep.3
• H37Rv.hypoxia.12hr.rep.1
• H37Rv.hypoxia.12hr.rep.3
• H37Rv.hypoxia.1.day.rep.2
• H37Rv.hypoxia.1.day.rep.3
• H37Rv.hypoxia.1.day.rep.4
• H37Rv.hypoxia.1.day.rep.5
• H37Rv.hypoxia.1.day.rep.6
• H37Rv.hypoxia.1.day.rep.7
• H37Rv.hypoxia.1.day.rep.9
• H37Rv.hypoxia.1.day.rep.10
• H37Rv.hypoxia.4.day.rep.1
• H37Rv.hypoxia.4.day.rep.4
• H37Rv.hypoxia.4.day.rep.6
• H37Rv.hypoxia.4.day.rep.7
• H37Rv.hypoxia.7.day.rep.1
• H37Rv.hypoxia.7.day.rep.3
• H37Rv.hypoxia.7.day.rep.5
• H37Rv.hypoxia.7.day.rep.6
• H37Rv.hypoxia.7.day.rep.7
• H37Rv.diamide.1h.rep.3
• H37Rv.diamide.1h.rep.6
• H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
• H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2
• H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.3
• H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
• H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
• CHP_25uM_1h_01
• CHP_25uM_2h_01
• Starvation_1254_OA50_3d_03
• Starvation_1254_OA50_3d_04
• Starvation_1254_OA50_6h_01
• Starvation_1254_PA50_24h_02
• Starvation_1254_PA50_24h_03
• Starvation_1254_PA50_24h_04
• Starvation_1254_PA50_6h_01
• Starvation_1254_PA50_6h_02
• Starvation_1254_PA50_6h_03
• Starvation_1254_PA50_6h_04
• Starvation_OA50_24h_01
• Starvation_OA50_24h_03
• Starvation_OA50_24h_04
• Starvation_OA50_6h_02
• Starvation_OA50_6h_03
• Starvation_OA50_6h_04
• Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
• MTB.in.Wild.type.macrophages.for.4hrs
• MTB.in.Wild.type.macrophages.for.24hrs
• MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.4
• MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.1
• MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.2
• MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.3
• MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.4
• MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.5
• MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.6
• MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.1
• MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.3
• MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.4
• MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
• MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.6
• MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.1
• MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.2
• MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.3
• MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.4
• MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.5
• MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
• Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
• Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
• Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
• Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
• Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
• Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
• SG2.A0_N02A01c3
• SG2.B0_N02A09c3
• SG2.D0_N02A01c5
• SG6.H0_N5A03cy.5
• SG6_A0_N7A10cy.3
• SG6_B0_N7A10cy.5
• SG7.BT0_N11A02cy.5
• SG7.CT0_N11A03cy.5
• SG8.C.Day.0.post_N27A08cy.3
• SG.ISB.3.0B_N30A01cy.5
• SG8.C.Day.1_N37A11cy.5
• SG8.C.Day.1_N27A09cy.3
• SG8.D.Day.1_N27A12cy.3
• SG8.A.Day.1_fix_N37A03cy.5
• SG7.CT1_N11A07cy.5
• SG7.AT1_N11A05cy.5
• SG6.D1_N5A05cy.5
• SG6.C1_N5A04cy.5
• SG2.B1_N02A10c3
• SG2.A1_N02A02c3
• SG8.A.Day.2_N37A08cy.3
• SG8.C.Day.2_N37A12cy.5
• SG8.B.Day.2_N37A06cy.5
• SG2.A2_N02A03c3
• SG2.B2_N02A11c3
• SG8.A.Day.3_N37A09cy.3
• SG8.B.Day.3_N37A07cy.5
• SG8.A.Day.5_N37A10cy.3
• SG8.B.Day.5_N37A08cy.5
• SG6D.T7_N11A02cy.3
• SG6C.T7_N11A01cy.3
• SG7.T7D_N11A11cy.5
• SG8.A.Day.7_N37A11cy.3
• SG.ISB.3.7C_N30A03cy.5
• SG.ISB.3.7D_N30A04cy.3
• SG12.B0_N32A09cy.3
• SG12.A0_N32A01cy.3
• SG12.A1_N32A02cy.3
• SG12.B1_N32A10cy.3
• SG12.C1_N32A06cy.5
• SG12.A2_N32A03cy.3
• SG12.B2_N32A11cy.3
• SG12.C2_N32A07cy.5
• SG12.A4_N32A04cy.3
• SG12.B4_N32A12cy.3
• SG12.A6_N32A05cy.3
• SG12.A8_N32A06cy.3
• SG12.C8_N32A10cy.5
• SG6D.T8_N11A03cy.3
• SG.ISB.3.8A_N30A04cy.5
• SG.ISB.3.8B_N30A05cy.3
• SG.ISB.3.8C_N30A05cy.5
• SG.ISB.3.8D_N30A06cy.3
• SG2.A9_N02A08c3
• SG6.D11_N8A09cy.5
• SG6.B11_N5A11cy.5
• SG7.T12D_N11A12cy.3
• SG7.T12C_N11A11cy.3
• SG7.T12B_N11A10cy.3
• SG7.T12A_N11A09cy.3
• SG12.A120_N32A08cy.3
• SG.ISB.3.12C_N30A07cy.5
• SG6.A14_N8A10cy.5
• SG6.B14_N8A11cy.5
• SG6.C14_N8A12cy.5
• WT_140mM_NaCl_Rep2
• A00470_Q1_t30_diamide
• A00437_Q2_t60_diamide
• X0.2ug.mL.RifvsDMSO..6h
• X0.2ug.mL.RifvsDMSO..6hA
• Rif.0.5ug.mL.vsDMSO.2.5h
• Rif.5ug.mL.vsDMSO.2.5h
• Rif.5ug.mL.vsDMSO.2.5hA
• X0.1ug.mL.RifpvsEtOH..6h
• X0.1ug.mL.RifpvsEtOH..6hA