Bicluster

Bicluster Motifs

Bicluster Genes

• Rv0256c
• Rv0436c
• Rv0437c
• Rv0884c
• Rv1543
• Rv2124c
• Rv2305
• Rv2329c
• Rv3007c
• Rv3242c
• Rv3575c
• Rv3651
• Rv3775

Bicluster Conditions

• H37Rv..7H9.roll.replicate.1.x
• H37Rv..Dubos.media.replicate.1
• H37Rv..Dubos.media.replicate.3
• H37Rv..Sauton.s.media.replicate.3
• H37Rv..Sauton.s.media.replicate.4
• H37Rv..Youman.media.replicate.2
• H37Rv..Youman.media.replicate.3
• H37Rv..7H9.roll.replicate.2.y
• Strain.CDC1551..replicate.1
• Strain.CDC1551..replicate.2
• Strain.CDC1551..replicate.4
• Strain.1006...replicate.1
• Strain.1006...replicate.2
• Strain.1006...replicate.3
• Strain.1006...replicate.4
• Strain.1254...replicate.3
• Strain.1843...replicate.2
• Strain.1843...replicate.3
• Strain.3160..replicate.1
• Strain.3160...replicate.3
• Strain.3160..replicate.4
• Strain.9800608..replicate.1
• Strain.9800608..replicate.2
• Strain.9800608...replicate.3
• Strain.9800608..replicate.4
• Strain.9802501..replicate.2
• Strain.9802501..replicate.4
• Strain.9802826..replicate.1
• Strain.M3061a..replicate.1
• Strain.M3061a..replicate.2
• MTB.strain.1254.Ctrl.vs.high.aeration.rep1
• MTB.strain.1254.Ctrl.vs.high.aeration.rep2
• MTB.strain.1254.Ctrl.vs.high.aeration.rep3
• MTB1254.Day.0.rep.2
• MTB1254.Day.0.rep.3
• MTB1254.vs..MTB1254.rep1
• MTB1254.vs..MTB1254.rep2
• MTB1254.vs..MTB1254.rep3
• MTB1254.vs..MTB1254.rep4
• MTB1254.vs..MTB1254.rep6
• H37Rv.Day.0.rep.3
• H37Rv.Day6.2
• H37Rv.Day6.3
• H37Rv.Day8.1
• H37Rv.Day8.2
• H37Rv.Day8.3
• H37Rv.Day14.1
• H37Rv.Day14.2
• H37Rv.Day24.3
• WT.t.6h.WT.t.0h..1
• pH4.8vspH6.8..2h.
• pH4.8vspH6.8..2h.A
• pH4.8vspH6.8..2h.B
• pH4.8vspH6.8..4h.
• pH4.8vspH6.8..4h.A
• pH4.8vspH6.8..4h.B
• pH4.8vspH6.8..4h.C
• pH4.8vspH6.8..5h.
• pH4.8vspH6.8..5.5h.
• pH4.8vspH6.8..7h.
• pH4.8vspH6.8..11h.
• pH5.2vspH6.8..2h.
• pH5.2vspH6.8..5h.
• pH5.2vspH6.8..5.5h.
• pH5.2vspH6.8..10.5h.
• pH5.2vspH6.8..11h.
• pH5.2vspH6.8..16h.
• pH5.6vspH6.8..2h.A
• pH5.6vspH6.8..4h.
• pH5.6vspH6.8..5h.
• pH5.6vspH6.8..7h.
• pH5.6vspH6.8..11h.
• pH5.6vspH6.8..16h.
• Mtm.0.2ug.mL.vs.ctrl.8h.1.x
• PBS.Tw.DMSOvs7H9..6h
• H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
• Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
• Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
• Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
• Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
• Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
• Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
• Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3
• Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
• H37Rv.wild.type.Vs.H37Rv.wild.type.rep.1
• H37Rv.wild.type.Vs.H37Rv.wild.type.rep.6
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
• Glycerol_1._10M_01
• Glycerol_1._30M_01
• Starvation_1254_24h_07
• Starvation_1254_24h_08
• Starvation_1254_3d_01
• Starvation_1254_3d_04
• Starvation_1254_5d_02
• Starvation_1254_6h_07
• Starvation_1254_6h_08
• H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.1
• H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.1
• H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.2
• Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
• H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.3
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.1
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.3
• CDC1551.ctrl.vs.ctrl.at.0.hr.rep.1
• H37Rv.reaeration.for.1hrs.rep.2
• H37Rv.reaeration.for.1hrs.rep.6
• H37Rv.reaeration.for.1hrs.rep.8
• H37Rv.reaeration.for.4hrs.rep.1
• H37Rv.reaeration.for.4hrs.rep.5
• H37Rv.reaeration.for.4hrs.rep.8
• H37Rv.reaeration.for.6hrs.rep.1
• H37Rv.reaeration.for.6hrs.rep.3
• H37Rv.reaeration.for.6hrs.rep.5
• H37Rv.reaeration.for.12hrs.rep.1
• H37Rv.reaeration.for.12hrs.rep.5
• H37Rv.reaeration.for.12hrs.rep.6
• H37Rv.reaeration.for.24hrs.rep.1
• H37Rv.reaeration.for.24hrs.rep.2
• H37Rv.reaeration.for.24hrs.rep.4
• H37Rv.reaeration.for.24hrs.rep.5
• H37Rv.reaeration.for.24hrs.rep.6
• Mtb.response.to.pH.5.5..6.replicates.
• Mtb.response.to.pH.6.5..6.replicates.
• BCG.2hr.phagosomal.profile
• M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
• WT.TB.rep3
• MTB.in.Wild.type.macrophages.for.48hrs
• MTB.in.Wild.type.macrophages...IFNg.for.4hrs
• MTB.in.Wild.type.macrophages...IFNg.for.24hrs
• Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
• Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
• Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
• Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
• Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
• Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
• Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
• WT_140mM_NaCl_Rep2
• WT_140mM_NaCl_Rep3
• WT_140mM_NaCl_Rep4
• wild.type..mc.2.6020...biological.rep1
• wild.type..mc.2.6020...biological.rep2
• hip.mutant.KL2801..biological.rep1
• hip.mutant.KL2825..biological.rep1
• hip.mutant.KL2849..biological.rep2
• hip.mutant.HTS1090..biological.rep1
• hip.mutant.HTS1105..biological.rep1
• hip.mutant.HTS1105..biological.rep2
• hip.mutant.HT1116..biological.rep1
• hip.mutant.HT1116..biological.rep2
• hip.mutant.HT1120..biological.rep1
• hip.mutant.HT1130..biological.rep2
• hip.mutant.HT1134..biological.rep2
• hip.mutant.HT1137..biological.rep2
• hip.mutant.HT1170..biological.rep1
• Mtm.0.2ug.mL.vs.ctrl.8h.1.y
• Mtm.0.2ug.mL.vs.ctrl.8h.2.y
• Mtm.0.2ug.mL.vs.ctrl.12h.1.y