Bicluster

Bicluster Motifs

Bicluster Genes

• Rv0138
• Rv0139
• Rv0354c
• Rv0364
• Rv0656c
• Rv0744c
• Rv1194c
• Rv1206
• Rv1320c
• Rv1386
• Rv1387
• Rv1485
• Rv1848
• Rv1850
• Rv1905c
• Rv2105
• Rv2172c
• Rv2184c
• Rv2432c
• Rv2450c
• Rv2795c
• Rv2876
• Rv2956
• Rv2960c
• Rv3026c
• Rv3172c
• Rv3276c
• Rv3335c

Bicluster Conditions

• H37Rv.0.05..SDS.exposure.for.1h.rep.3
• H37Rv.0.05..SDS.exposure.for.1h.rep.4
• H37Rv.0.05..SDS.exposure.for.1h.rep.5
• H37Rv.0.05..SDS.exposure.for.1h.rep.6
• MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.1
• MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.2
• MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.3
• MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.1
• MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.2
• MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.3
• MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.4
• MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.5
• MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.6
• H37Rv.vs..H37Rv.SDS.treated.rep.1
• H37Rv.vs..H37Rv.SDS.treated.rep.2
• H37Rv.vs..H37Rv.SDS.treated.rep.3
• H37Rv.vs..H37Rv.SDS.treated.rep.4
• H37Rv.vs..H37Rv.SDS.treated.rep.5
• H37Rv.vs..H37Rv.SDS.treated.rep.6
• H37Rv.0.2..Oxygen..2h..1
• H37Rv.0.2..Oxygen..2h..2
• H37Rv.0.2..Oxygen..2h..6
• H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.5
• pH4.8vspH6.8..2h.
• pH4.8vspH6.8..2h.B
• pH4.8vspH6.8..4h.
• pH4.8vspH6.8..4h.A
• pH4.8vspH6.8..4h.B
• pH4.8vspH6.8..4h.C
• pH4.8vspH6.8..5h.
• pH4.8vspH6.8..6h.
• pH4.8vspH6.8..7h.
• pH4.8vspH6.8..11h.
• pH5.2vspH6.8..5h.
• pH5.2vspH6.8..5.5h.
• pH5.2vspH6.8..10.5h.
• pH5.2vspH6.8..11h.
• pH5.6vspH6.8..2h.A
• pH5.6vspH6.8..5h.
• H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2
• H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.3
• H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.4
• H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.6
• Whole.Lung.Surfactant.2hrs.rep.1
• Whole.Lung.Surfactant.2hrs.rep.3
• Whole.Lung.Surfactant.30min.rep.4
• Whole.Lung.Surfactant.30min.rep.5
• Extracted.Lung.Surfactant.2hrs.rep.1
• Extracted.Lung.Surfactant.2hrs.rep.2
• Extracted.Lung.Surfactant.30min.rep.4
• Purified.Surfactant.Lipids.2hrs.rep.2
• Purified.Surfactant.Lipids.30min.rep.1
• Purified.Surfactant.Lipids.30min.rep.2
• Purified.Human.SP.A.Coated.2hrs.rep1
• Purified.Human.SP.A.Uncoated.2hrs.rep2
• Purified.Human.SP.A.Uncoated.2hrs.rep3
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
• MTB1254_SDS_90MIN_04
• SDS_3h_01
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
• Mtb.response.to.pH.5.5..6.replicates.
• BCG.2hr.phagosomal.profile
• BCG.24hr.phagosomal.profile
• M..tuberculosis.CDC1551.2hr.phagosome.expression.profile
• M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
• MTB.in.Wild.type.macrophages.for.24hrs
• MTB.in.Wild.type.macrophages.for.48hrs
• Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
• WT_140mM_NaCl_Rep1
• WT_140mM_NaCl_Rep2
• WT_140mM_NaCl_Rep3
• WT_140mM_NaCl_Rep4
• X40ug.mL.5CL.pH5.6..2h..1
• X40ug.mL.5CL.pH5.6..2h..2
• X40ug.mL.5CL.pH5.6..4h..3
• X80ug.mL.5CL.pH5.6..2h.
• X0.12mg.mL.BZA.pH5.6..2h.
• X0.12mg.mL.BZAvspH5.6..5h.
• X0.12mg.mL.BZAvspH5.6..11h.
• X0.12mg.mL.Nam.pH5.6..2h..2
• X0.12mg.mL.Nam.pH5.6..4h..2
• X0.12mg.mL.NamvspH5.6..4h.
• X0.12mg.mL.NamvspH5.6..7h.
• X1.2mg.mL.NamvspH5.6..5h.
• X1.2mg.mL.NamvspH5.6..10.5h.
• X0.12mg.mL.PZA.pH5.6..2.5h.
• X0.12mg.mL.PZA.pH5.6..5h.
• X0.12mg.mL.PZAvspH5.6..6h.
• X0.12mg.mL.PZAvspH5.6..6h.A
• X1.2mg.mL.PZAvspH5.6..4h.B
• X1.2mg.mL.PZAvspH5.6..7h.
• X1.2mg.mL.PZAvspH5.6..7h.A