Bicluster

Bicluster Motifs

Bicluster Genes

• Rv0024
• Rv0492c
• Rv0604
• Rv0729
• Rv0876c
• Rv1656
• Rv1659
• Rv1666c
• Rv1668c
• Rv1800
• Rv2118c
• Rv2236c
• Rv2362c
• Rv2786c
• Rv2818c
• Rv2892c
• Rv3362c
• Rv3368c
• Rv3754
• Rv3860

Bicluster Conditions

• H37Rv..7H9.roll.replicate.3.x
• H37Rv..7H9.shake.replicate.1
• H37Rv..7H9.shake.replicate.2
• H37Rv..7H9.shake.replicate.4
• H37Rv..Dubos.media.replicate.2
• H37Rv..Dubos.media.replicate.4
• H37Rv..Sauton.s.media.replicate.2
• H37Rv..Sauton.s.media.replicate.3
• H37Rv..Youman.media.replicate.3
• H37Rv..Youman.media.replicate.4
• H37Rv..7H9.roll.replicate.3.y
• Strain.CDC1551..replicate.2
• Strain.1006...replicate.1
• Strain.1254...replicate.4
• Strain.1254...replicate.2
• Strain.1254...replicate.3
• Strain.1843..replicate.1
• Strain.1843...replicate.2
• Strain.1843...replicate.3
• Strain.1843..replicate.4
• Strain.3160..replicate.2
• Strain.3160...replicate.3
• Strain.3160..replicate.4
• Strain.9700665..replicate.1
• Strain.9700665..replicate.2
• Strain.9700665..replicate.4
• Strain.9800608..replicate.1
• Strain.9800608..replicate.4
• Strain.9802501..replicate1
• Strain.9802501..replicate.2
• Strain.9802501..replicate.3
• Strain.9802501..replicate.4
• Strain.9802826..replicate.1
• Strain.9802826..replicate.2
• Strain.9802826..replicate.4
• Strain.M3061a..replicate.1
• Strain.M3061a..replicate.2
• H37Rv.Day.0.rep.1
• Strain.M3061a..replicate.4
• H37Rv.Vs.M.bovis.rep1
• H37Rv.Vs.M.bovis.rep3
• H37Rv.Vs.M.bovis.rep4
• MTB.strain.1254.Ctrl.vs.high.aeration.rep1
• MTB.strain.1254.Ctrl.vs.high.aeration.rep2
• MTB1254.vs..MTB1254.rep2
• MTB1254.vs..MTB1254.rep5
• H37Rv.Day.0.rep.2
• H37Rv.Day.0.rep.3
• H37Rv.Day6.1
• H37Rv.Day6.2
• H37Rv.Day6.3
• H37Rv.Day8.2
• H37Rv.Day14.1
• H37Rv.Day14.2
• H37Rv.Day14.3
• H37Rv.Day24.1
• H37Rv.Day24.2
• H37Rv.Day24.3
• H37Rv.Day60.1
• H37Rv.Day60.3
• WT.t.6h.WT.t.0h..2
• WT.t.0h.WT.t.6h..1
• Mtm.0.2ug.mL.vs.ctrl.8h.1.x
• Mtm.0.2ug.mL.vs.ctrl.8h.2.x
• Mtm.0.2ug.mL.vs.ctrl.12h.1.x
• Succinate.7H9.based.medium..1
• Succinate.7H9.based.medium..2
• PBS.Tween.7H9
• PBS.Tw.DMSOvs7H9..6h
• H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
• H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
• Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
• Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
• Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
• Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
• Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
• Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
• Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
• Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
• Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
• H37Rv.wild.type.Vs.H37Rv.wild.type.rep.2
• H37Rv.wild.type.Vs.H37Rv.wild.type.rep.3
• H37Rv.wild.type.Vs.H37Rv.wild.type.rep.4
• H37Rv.wild.type.Vs.H37Rv.wild.type.rep.5
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
• AA_30uM_10.min_04
• AA_30uM_10.min_05
• AA_30uM_10.min_07
• AA_30uM_10m_01
• AA_30uM_10min_03
• AA_30uM_1h_06
• AA_30uM_24h_02
• AA_30uM_24h_04
• AA_30uM_2h_01
• AA_30uM_2h_04
• AA_30uM_2h_09
• AA_30uM_30min_01
• AA_30uM_30min_05
• AA_30uM_30min_07
• AA_30uM_4h_01
• AA_30uM_4h_03
• AA_30uM_4h_04
• AA_30uM_4h_06
• AA_3uM_10min_02
• AA_60uM_24h_01
• Glycerol_1._10M_01
• L2A_30uM_10min_01
• L2A_30uM_10min_02
• L2A_30uM_10min_04
• L2A_30uM_10min_05
• L2A_30uM_10min_07
• L2A_30uM_1h_03
• L2A_30uM_1h_04
• L2A_30uM_1h_07
• L2A_30uM_1h_08
• L2A_30uM_1h_09
• L2A_30uM_2h_01
• LAA_50uM_10min_02
• OA_50uM_10min_01
• OA_50uM_10min_03
• OA_50uM_10min_04
• OA_50uM_10min_05
• OA_50uM_10min_07
• OA_50uM_10min_08
• OA_50uM_1h_02
• OA_50uM_1h_03
• OA_50uM_1h_04
• OA_50uM_1h_05
• OA_50uM_1h_06
• OA_50uM_1h_07
• OA_50uM_1h_08
• OA_50uM_1h_09
• OA_50uM_2h_01
• OA_50uM_2h_04
• OA_50uM_2h_05
• OA_50uM_2h_06
• OA_50uM_2h_07
• OA_50uM_2h_08
• OA_50uM_2h_10
• OA_50uM_30min_02
• OA_50uM_30min_05
• OA_50uM_30min_08
• OA_50uM_4h_01
• OA_50uM_4h_04
• OA_50uM_4h_06
• OA_50uM_4h_08
• PA_100uM_2h_04
• PA_5.uM_10min_02
• PA_50uM_10.min_02
• PA_50uM_10min_04
• PA_50uM_10min_08
• PA_50uM_10min_09
• PA_50uM_10min_10
• PA_50uM_12h_03
• PA_50uM_12h_04
• PA_50uM_1h_02
• PA_50uM_1h_04
• PA_50uM_1h_07
• PA_50uM_1h_10
• PA_50uM_1h_11
• PA_50uM_24h_07
• PA_50uM_2h_06
• PA_50uM_2h_08
• PA_50uM_30.min_07
• PA_50uM_30min_09
• PA_50uM_30min_11
• PA_50uM_3d_01
• PA_50uM_3d_05
• PA_50uM_3d_06
• PA_50uM_4h_05
• PA_50uM_4h_06
• PA_50uM_8h_02
• PA_50uM_8h_06
• PA_5uM_10.min_01
• Starvation_1254_OA50_3d_01
• Starvation_1254_OA50_3d_04
• Starvation_1254_OA50_5d_01
• Starvation_1254_OA50_5d_02
• Starvation_1254_PA50_6h_04
• Starvation_OA50_24h_01
• Starvation_OA50_24h_03
• Starvation_OA50_24h_04
• Starvation_OA50_6h_02
• Starvation_OA50_6h_03
• Starvation_OA50_6h_04
• H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.2
• H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3
• H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.1
• H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2
• H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.3
• CDC1551.Ctrl.vs.H37Rv.rep.1
• Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
• H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.3
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.1
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.2
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.5
• CDC1551.ctrl.vs.ctrl.at.0.hr.rep.1
• CDC1551.ctrl.vs.ctrl.at.0.hr.rep.2
• H37Rv.reaeration.for.1hrs.rep.1
• H37Rv.reaeration.for.1hrs.rep.4
• H37Rv.reaeration.for.1hrs.rep.5
• H37Rv.reaeration.for.1hrs.rep.8
• H37Rv.reaeration.for.4hrs.rep.1
• H37Rv.reaeration.for.4hrs.rep.2
• H37Rv.reaeration.for.4hrs.rep.3
• H37Rv.reaeration.for.4hrs.rep.4
• H37Rv.reaeration.for.4hrs.rep.6
• H37Rv.reaeration.for.4hrs.rep.7
• H37Rv.reaeration.for.4hrs.rep.8
• H37Rv.reaeration.for.6hrs.rep.2
• H37Rv.reaeration.for.6hrs.rep.3
• H37Rv.reaeration.for.6hrs.rep.5
• H37Rv.reaeration.for.12hrs.rep.4
• H37Rv.reaeration.for.12hrs.rep.5
• H37Rv.reaeration.for.12hrs.rep.6
• H37Rv.reaeration.for.24hrs.rep.2
• H37Rv.reaeration.for.24hrs.rep.3
• BCG.2hr.phagosomal.profile
• BCG.24hr.phagosomal.profile
• M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
• WT.TB.rep3
• MTB.in.Wild.type.macrophages.for.4hrs
• MTB.in.Wild.type.macrophages.for.24hrs
• MTB.in.Wild.type.macrophages...IFNg.for.24hrs
• MTB.in.Wild.type.macrophages...IFNg.for.48hrs
• Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
• Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
• Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
• Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
• Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
• Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
• Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
• Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
• Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
• Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
• Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
• SS_A1_RV.1
• SS_A1_RV.2
• SS_A1_RV.3
• wild.type..mc.2.6020...biological.rep1
• hip.mutant.KL2801..biological.rep2
• hip.mutant.KL2825..biological.rep2
• hip.mutant.KL2849..biological.rep1
• hip.mutant.KL2849..biological.rep2
• hip.mutant.HTS1105..biological.rep1
• hip.mutant.HT1116..biological.rep2
• hip.mutant.HT1117..biological.rep1
• hip.mutant.HT1117..biological.rep2
• hip.mutant.HT1120..biological.rep2
• hip.mutant.HT1130..biological.rep1
• hip.mutant.HT1134..biological.rep1
• hip.mutant.HT1134..biological.rep2
• hip.mutant.HT1170..biological.rep2
• Mtm.0.2ug.mL.vs.ctrl.8h.1.y
• Mtm.0.2ug.mL.vs.ctrl.8h.2.y