Bicluster

Bicluster Motifs

Bicluster Genes

• Rv0384c
• Rv0477
• Rv1398c
• Rv2009
• Rv2010
• Rv2053c
• Rv2111c
• Rv2182c
• Rv2374c
• Rv2621c
• Rv2657c
• Rv2694c
• Rv2707
• Rv2710
• Rv2711
• Rv2745c
• Rv2867c
• Rv2920c
• Rv3197
• Rv3409c
• Rv3879c

Bicluster Conditions

• High.iron.wt.vs.low.iron.wt.2a
• High.iron.wt.vs.low.iron.wt.2b
• High.iron.wt.vs.low.iron.wt.3a
• High.iron.wt.vs.low.iron.wt.3b
• pH4.8vspH6.8..2h.B
• pH4.8vspH6.8..4h.
• pH4.8vspH6.8..4h.C
• pH4.8vspH6.8..5h.
• pH4.8vspH6.8..5.5h.
• pH4.8vspH6.8..7h.
• pH5.2vspH6.8..11h.
• pH5.6vspH6.8..4h.
• pH5.6vspH6.8..4h.B
• pH5.6vspH6.8..5h.
• pH5.6vspH6.8..11h.
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
• Glucose_5mM_10min_01
• Starvation_1254_OA50_12h_01
• Starvation_1254_OA50_12h_02
• Starvation_1254_OA50_12h_03
• Starvation_1254_OA50_12h_04
• Starvation_1254_OA50_24h_01
• Starvation_1254_OA50_24h_03
• Starvation_1254_OA50_24h_04
• Starvation_1254_OA50_3d_01
• Starvation_1254_OA50_3d_02
• Starvation_1254_OA50_3d_03
• Starvation_1254_OA50_3d_04
• Starvation_1254_OA50_5d_02
• Starvation_1254_OA50_6h_01
• Starvation_1254_PA50_24h_01
• Starvation_OA50_24h_01
• Starvation_OA50_24h_02
• H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.2
• H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2
• H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.3
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
• Mtb.response.to.pH.5.5..6.replicates.
• Mtb.response.to.pH.6.5..6.replicates.
• BCG.24hr.phagosomal.profile
• M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
• MTB.in.Wild.type.macrophages.for.4hrs
• MTB.in.Wild.type.macrophages.for.48hrs
• MTB.in.Wild.type.macrophages...IFNg.for.4hrs
• Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
• Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
• Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
• Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
• Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
• Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
• Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
• Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
• Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
• WT_140mM_NaCl_Rep2
• WT_140mM_NaCl_Rep3
• WT_140mM_NaCl_Rep4
• X1ug.mL..59vsDMSO..6hA
• X10ug.mL..59.DMSO..6h
• X10ug.mL..109.DMSO..6h
• X.109..0.1ug.mL..vs.DMSO..12h..GEO.acc.GSM28050.
• X.109..1ug.mL..vs.DMSO..12h..replicate.1..GEO.ac.GSM28051.
• X.241..0.1ug.mL..DMSO..12h..1..GEO.acc.GSM28046.
• X.241..1ug.mL..DMSO..12h..1
• X20ug.mL.Procept.6776vsDMSO..6h
• X20ug.mL.Procept6776vsDMSO..6h
• X30ug.mLProcept6776vsDMSO.6hA
• X5ug.mLProcept.6778vsDMSO.6h
• X20ug.mL.Prcp.6778.DMSO..6h..1
• X20ug.mL.Prcp.6778.DMSO..6h..2
• X20ug.mLProcept6778vsDMSO.6hA
• X20ug.mLProcept6778vsDMSO.6hB
• X40ug.mLProcept6778vsDMSO.6h
• X40ug.mLProcept6778vsDMSO.6hA
• X10ug.mL.PA.1vsDMSO..6h
• X10ug.mL.PA.1vsDMSO..6hA
• X10ug.mL.PA.1vsDMSO..6hB
• X50ug.mL.PA.1vsDMSO..6h
• X10ug.mL.PA.21vsDMSO..6h
• X10ug.mL.PA.21vsDMSO..6hA
• X50ug.mL.PA.21vsDMSO..6h
• X50ug.mL.PA.21vsDMSO..6hA
• X0.2ug.mL.PA824.DMSO..6h..2
• X0.4ug.mL.PA824.DMSO..6h..3
• X0.4ug.mL.PA824.DMSO..6h..4
• X2ug.mL.PA824.DMSO..6h..2
• DIPED.50ug.mL.vs.DMSO.12h.2
• DIPED..100ug.mL..DMSO..12h..1
• DIPED..100ug.mL..DMSO..12h..2
• DIPED..100ug.mL..DMSO..12h..3
• X0.1mg.mL.TriclosanvsEtOH..6hA
• X0.1mg.mLTriclosanvsEtOH.6hB
• X0.15mg.mL.TricvsEtOH..6h
• X0.15mg.mL.TricvsEtOH..6hA
• X10ug.mL.TriclosanvsDMSO..6h
• X10ug.mL.TriclosanvsDMSO..6hA
• X10ug.mL.TriclosanvsDMSO..6hB
• X10ug.mL.TriclosanvsDMSO..6hC
• X50ug.mL.Triclosan.DMSO..6h
• X50ug.mL.Triclosan.EtOH
• X50ug.mL.TriclosanvsEtOH..6h
• X50ug.mL.TriclosanvsEtOH..6hA
• X100ug.mL.TriclosanvsEtOH..6hA
• X10ug.mL.EMBvsDMSO..6h
• X10ug.mL.EMBvsDMSO..6hA
• EMB.10ug.mL.vs.DMSO.12h.3
• X0.2mg.mL.AmpvsEtOH..6hB
• X12.5ug.mL.AntimycinvsDMSO..6h
• X25ug.mL.AntimycinvsDMSO..6h
• X50ug.mLAntimycinAvsDMSO..6h
• X50ug.mLAntimycinAvsDMSO..6hA
• X50ug.mLAntimycinAvsDMSO..6hB
• X0.32ug.mL.CervsEtOH..6h
• X0.32ug.mL.CervsEtOH..6hA
• X0.5ug.mL.CervsEtOH..6h
• X0.5ug.mL.CeruleninvsDMSO..6hA
• X20ug.mL.Cephalexin.Ctrl..6h..1
• X20ug.mL.Cephalexin.Ctrl..6h..2
• X100ug.mL.Cephalexin.Ctrl..6h
• X100ug.mLCephalexinvsEtOH.6h
• X1mM.DTNBvsDMSO..6h
• X2mM.DTNBvsDMSO
• X12ug.mLEthionamidevsEtOH.6hA
• X0.2ug.mL.INH.EtOH..6h
• X10ug.mL.methoxatinvsDMSO..6h.A
• X10ug.mLMethoxatinvsDMSO.6h
• X20ug.mL.methoxatinvsDMSO..6h
• X130ug.mL.TLMvsDMSO..6h
• X130ug.mL.TLMvsDMSO..6hA
• X0.13mg.mL.TLMvsDMSO..6h
• X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
• X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.2.x
• X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.3
• X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.4
• X2ug.ml.PA.824.vs.DMSO.6hrs.rep.1.x
• X2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
• X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.x
• X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
• X130ug.ml.TLM.vs.DMSO.6hrs.rep.1
• X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1
• X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.2
• X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.1
• X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.3
• X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.4
• X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.1
• X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.2.y
• X2ug.ml.PA.824.vs.DMSO.6hrs.rep.1.y
• X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.y
• H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
• H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
• H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
• H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
• H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
• H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.2
• H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.1
• H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.1
• H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.2
• H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.2
• H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.1
• H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.1
• H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2
• H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.DS.rep.2
• MTB.at.T0..biological.rep1
• MTB.at.T0..biological.rep3
• MTB.at.T30..biological.rep1
• MTB.at.T30..biological.rep2
• MTB.at.T30..biological.rep3
• MTB.at.T60..biological.rep1
• MTB.at.T60..biological.rep2
• MTB.at.T360..biological.rep2