Bicluster – MTB EGRIN 2.0

ID: 552f8e81b744335b89d7797f
# Conditions: 212
# Genes: 26
Residual: 0.42074274264914

Bicluster Motifs

Bicluster Genes

Rv0026
Rv0124
Rv0230c
Rv0388c
Rv0582
Rv0596c
Rv0628c
Rv0656c
Rv0793
Rv0794c
Rv0875c
Rv1028c
Rv1088
Rv1258c
Rv1518
Rv1576c
Rv1578c
Rv1706c
Rv1951c
Rv2415c
Rv2436
Rv3073c
Rv3177
Rv3345c
Rv3468c

Bicluster Conditions

MTB.strain.1254.Ctrl.vs.high.aeration.rep1
MTB.strain.1254.Ctrl.vs.high.aeration.rep2
MTB.strain.1254.Ctrl.vs.high.aeration.rep3
PBS.Tw.DMSOvs7H9..6h
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
AA_10uM_10min_01
AA_30uM_10m_01
AA_30uM_10min_02
AA_30uM_10min_03
AA_30uM_1h_02
AA_30uM_1h_04
AA_30uM_1h_05
AA_30uM_1h_07
AA_30uM_2h_03
AA_30uM_2h_05
AA_30uM_2h_06
AA_30uM_2h_07
AA_30uM_30min_01
AA_30uM_30min_02
AA_30uM_30min_03
AA_30uM_30min_04
AA_30uM_30min_05
AA_30uM_30min_06
AA_30uM_30min_07
AA_30uM_30min_08
AA_30uM_30min_09
AA_30uM_4h_03
AA_30uM_4h_04
AA_30uM_4h_05
AA_30uM_4h_06
AA_30uM_4h_09
AA_3uM_10min_02
AA_60uM_24h_01
AA_60uM_24h_03
Glycerol_1.
L2A_30uM_10min_01
L2A_30uM_10min_02
L2A_30uM_10min_04
L2A_30uM_10min_05
L2A_30uM_10min_06
L2A_30uM_10min_07
L2A_30uM_1h_02
L2A_30uM_1h_03
L2A_30uM_1h_04
L2A_30uM_1h_08
L2A_30uM_2h_01
L2A_30uM_2h_03
L2A_30uM_2h_04
L2A_30uM_2h_05
L2A_30uM_30min_03
L2A_30uM_30min_04
L2A_30uM_30min_07
L2A_30uM_4h_03
L2A_30uM_4h_04
L2A_30uM_4h_05
L2A_30uM_4h_07
L2A_30uM_4h_08
LAA_50uM_10min_02
OA_50uM_10min_03
OA_50uM_10min_05
OA_50uM_10min_06
OA_50uM_10min_07
OA_50uM_10min_08
OA_50uM_1h_04
OA_50uM_1h_05
OA_50uM_1h_10
OA_50uM_24h_01
OA_50uM_24h_02
OA_50uM_24h_03
OA_50uM_24h_05
OA_50uM_2h_02
OA_50uM_2h_04
OA_50uM_2h_05
OA_50uM_2h_06
OA_50uM_2h_08
OA_50uM_2h_10
OA_50uM_30min_02
OA_50uM_30min_04
OA_50uM_30min_05
OA_50uM_30min_09
OA_50uM_4h_03
OA_50uM_4h_04
OA_50uM_4h_06
OA_50uM_4h_07
OA_50uM_4h_08
PA_100uM_24h_01
PA_100uM_2h_03
PA_10uM_10min_02
PA_5.uM_10min_02
PA_50uM_10min_05
PA_50uM_10min_08
PA_50uM_10min_09
PA_50uM_10min_10
PA_50uM_12h_01
PA_50uM_12h_02
PA_50uM_12h_03
PA_50uM_12h_04
PA_50uM_12h_05
PA_50uM_12h_06
PA_50uM_1h_03
PA_50uM_1h_04
PA_50uM_1h_05
PA_50uM_1h_06
PA_50uM_1h_08
PA_50uM_1h_09
PA_50uM_1h_10
PA_50uM_24h_01
PA_50uM_24h_06
PA_50uM_24h_09
PA_50uM_24h_10
PA_50uM_2h_02
PA_50uM_2h_03
PA_50uM_2h_05
PA_50uM_2h_06
PA_50uM_30.min_04
PA_50uM_30.min_06
PA_50uM_30.min_07
PA_50uM_30min_01
PA_50uM_30min_02
PA_50uM_30min_03
PA_50uM_30min_10
PA_50uM_30min_11
PA_50uM_3d_01
PA_50uM_3d_02
PA_50uM_4h
PA_50uM_4h_01
PA_50uM_4h_02
PA_50uM_4h_03
PA_50uM_4h_04
PA_50uM_4h_06
PA_50uM_4h_07
PA_50uM_8h_01
PA_50uM_8h_03
PA_50uM_8h_04
PA_50uM_8h_05
PA_50uM_8h_06
PA_5uM_10.min_01
Starvation_1254_24h_02
Starvation_1254_24h_03
Starvation_1254_24h_05
Starvation_1254_24h_06
Starvation_1254_24h_08
Starvation_1254_3d_01
Starvation_1254_3d_02
Starvation_1254_5d_01
Starvation_1254_6h_02
Starvation_1254_6h_04
Starvation_1254_6h_06
Starvation_1254_6h_07
Starvation_1254_6h_08
Starvation_1254_OA50_24h_01
Starvation_1254_OA50_24h_02
Starvation_1254_OA50_24h_03
Starvation_1254_OA50_24h_04
Starvation_1254_OA50_5d_02
Starvation_1254_OA50_5d_03
Starvation_1254_OA50_5d_04
Starvation_1254_PA50_24h_01
Starvation_1254_PA50_24h_03
Starvation_1254_PA50_24h_04
Starvation_1254_PA50_6h_01
Starvation_1254_PA50_6h_02
Starvation_1254_PA50_6h_03
Starvation_1254_PA50_6h_04
Starvation_OA50_24h_01
Starvation_OA50_24h_02
Starvation_OA50_24h_04
Starvation_OA50_6h_02
Starvation_OA50_6h_03
Starvation_OA50_6h_04
H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
H37Rv.reaeration.for.1hrs.rep.1
H37Rv.reaeration.for.1hrs.rep.2
H37Rv.reaeration.for.1hrs.rep.4
H37Rv.reaeration.for.4hrs.rep.1
H37Rv.reaeration.for.4hrs.rep.2
H37Rv.reaeration.for.6hrs.rep.5
H37Rv.reaeration.for.12hrs.rep.6
H37Rv.reaeration.for.24hrs.rep.1
H37Rv.reaeration.for.24hrs.rep.2
H37Rv.reaeration.for.24hrs.rep.4
MTB.in.Wild.type.macrophages.for.4hrs
MTB.in.Wild.type.macrophages...IFNg.for.4hrs
MTB.in.Wild.type.macrophages...IFNg.for.24hrs
MTB.in.Wild.type.macrophages...IFNg.for.48hrs
Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
X0.2ug.mL.RifvsDMSO..6h
X0.2ug.mL.RifvsDMSO..6hA
Rif.0.5ug.mL.vsDMSO.2.5hA
Rif.5ug.mL.vsDMSO.2.5hA
X0.1ug.mL.RifpvsEtOH..6h
X0.1ug.mL.RifpvsEtOH..6hA
H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep2
X5ug.ml.Rifampicin.vs.DMSO.2.5hrs

Column members cluster 552f8e81b744335b89d7797f Species (TODO)

MTB.strain.1254.Ctrl.vs.high.aeration.rep1
MTB.strain.1254.Ctrl.vs.high.aeration.rep2
MTB.strain.1254.Ctrl.vs.high.aeration.rep3
PBS.Tw.DMSOvs7H9..6h
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
AA_10uM_10min_01
AA_30uM_10m_01
AA_30uM_10min_02
AA_30uM_10min_03
AA_30uM_1h_02
AA_30uM_1h_04
AA_30uM_1h_05
AA_30uM_1h_07
AA_30uM_2h_03
AA_30uM_2h_05
AA_30uM_2h_06
AA_30uM_2h_07
AA_30uM_30min_01
AA_30uM_30min_02
AA_30uM_30min_03
AA_30uM_30min_04
AA_30uM_30min_05
AA_30uM_30min_06
AA_30uM_30min_07
AA_30uM_30min_08
AA_30uM_30min_09
AA_30uM_4h_03
AA_30uM_4h_04
AA_30uM_4h_05
AA_30uM_4h_06
AA_30uM_4h_09
AA_3uM_10min_02
AA_60uM_24h_01
AA_60uM_24h_03
Glycerol_1.
L2A_30uM_10min_01
L2A_30uM_10min_02
L2A_30uM_10min_04
L2A_30uM_10min_05
L2A_30uM_10min_06
L2A_30uM_10min_07
L2A_30uM_1h_02
L2A_30uM_1h_03
L2A_30uM_1h_04
L2A_30uM_1h_08
L2A_30uM_2h_01
L2A_30uM_2h_03
L2A_30uM_2h_04
L2A_30uM_2h_05
L2A_30uM_30min_03
L2A_30uM_30min_04
L2A_30uM_30min_07
L2A_30uM_4h_03
L2A_30uM_4h_04
L2A_30uM_4h_05
L2A_30uM_4h_07
L2A_30uM_4h_08
LAA_50uM_10min_02
OA_50uM_10min_03
OA_50uM_10min_05
OA_50uM_10min_06
OA_50uM_10min_07
OA_50uM_10min_08
OA_50uM_1h_04
OA_50uM_1h_05
OA_50uM_1h_10
OA_50uM_24h_01
OA_50uM_24h_02
OA_50uM_24h_03
OA_50uM_24h_05
OA_50uM_2h_02
OA_50uM_2h_04
OA_50uM_2h_05
OA_50uM_2h_06
OA_50uM_2h_08
OA_50uM_2h_10
OA_50uM_30min_02
OA_50uM_30min_04
OA_50uM_30min_05
OA_50uM_30min_09
OA_50uM_4h_03
OA_50uM_4h_04
OA_50uM_4h_06
OA_50uM_4h_07
OA_50uM_4h_08
PA_100uM_24h_01
PA_100uM_2h_03
PA_10uM_10min_02
PA_5.uM_10min_02
PA_50uM_10min_05
PA_50uM_10min_08
PA_50uM_10min_09
PA_50uM_10min_10
PA_50uM_12h_01
PA_50uM_12h_02
PA_50uM_12h_03
PA_50uM_12h_04
PA_50uM_12h_05
PA_50uM_12h_06
PA_50uM_1h_03
PA_50uM_1h_04
PA_50uM_1h_05
PA_50uM_1h_06
PA_50uM_1h_08
PA_50uM_1h_09
PA_50uM_1h_10
PA_50uM_24h_01
PA_50uM_24h_06
PA_50uM_24h_09
PA_50uM_24h_10
PA_50uM_2h_02
PA_50uM_2h_03
PA_50uM_2h_05
PA_50uM_2h_06
PA_50uM_30.min_04
PA_50uM_30.min_06
PA_50uM_30.min_07
PA_50uM_30min_01
PA_50uM_30min_02
PA_50uM_30min_03
PA_50uM_30min_10
PA_50uM_30min_11
PA_50uM_3d_01
PA_50uM_3d_02
PA_50uM_4h
PA_50uM_4h_01
PA_50uM_4h_02
PA_50uM_4h_03
PA_50uM_4h_04
PA_50uM_4h_06
PA_50uM_4h_07
PA_50uM_8h_01
PA_50uM_8h_03
PA_50uM_8h_04
PA_50uM_8h_05
PA_50uM_8h_06
PA_5uM_10.min_01
Starvation_1254_24h_02
Starvation_1254_24h_03
Starvation_1254_24h_05
Starvation_1254_24h_06
Starvation_1254_24h_08
Starvation_1254_3d_01
Starvation_1254_3d_02
Starvation_1254_5d_01
Starvation_1254_6h_02
Starvation_1254_6h_04
Starvation_1254_6h_06
Starvation_1254_6h_07
Starvation_1254_6h_08
Starvation_1254_OA50_24h_01
Starvation_1254_OA50_24h_02
Starvation_1254_OA50_24h_03
Starvation_1254_OA50_24h_04
Starvation_1254_OA50_5d_02
Starvation_1254_OA50_5d_03
Starvation_1254_OA50_5d_04
Starvation_1254_PA50_24h_01
Starvation_1254_PA50_24h_03
Starvation_1254_PA50_24h_04
Starvation_1254_PA50_6h_01
Starvation_1254_PA50_6h_02
Starvation_1254_PA50_6h_03
Starvation_1254_PA50_6h_04
Starvation_OA50_24h_01
Starvation_OA50_24h_02
Starvation_OA50_24h_04
Starvation_OA50_6h_02
Starvation_OA50_6h_03
Starvation_OA50_6h_04
H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
H37Rv.reaeration.for.1hrs.rep.1
H37Rv.reaeration.for.1hrs.rep.2
H37Rv.reaeration.for.1hrs.rep.4
H37Rv.reaeration.for.4hrs.rep.1
H37Rv.reaeration.for.4hrs.rep.2
H37Rv.reaeration.for.6hrs.rep.5
H37Rv.reaeration.for.12hrs.rep.6
H37Rv.reaeration.for.24hrs.rep.1
H37Rv.reaeration.for.24hrs.rep.2
H37Rv.reaeration.for.24hrs.rep.4
MTB.in.Wild.type.macrophages.for.4hrs
MTB.in.Wild.type.macrophages...IFNg.for.4hrs
MTB.in.Wild.type.macrophages...IFNg.for.24hrs
MTB.in.Wild.type.macrophages...IFNg.for.48hrs
Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
X0.2ug.mL.RifvsDMSO..6h
X0.2ug.mL.RifvsDMSO..6hA
Rif.0.5ug.mL.vsDMSO.2.5hA
Rif.5ug.mL.vsDMSO.2.5hA
X0.1ug.mL.RifpvsEtOH..6h
X0.1ug.mL.RifpvsEtOH..6hA
H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep2
X5ug.ml.Rifampicin.vs.DMSO.2.5hrs