Bicluster – MTB EGRIN 2.0

ID: 552f93a7b744335b89d79730
# Conditions: 177
# Genes: 20
Residual: 0.44983178352129

Bicluster Motifs

Bicluster Genes

Rv0004
Rv0024
Rv0265c
Rv0945
Rv0946c
Rv1236
Rv1273c
Rv1290c
Rv1546
Rv1709
Rv1712
Rv1746
Rv1851
Rv2112c
Rv3163c
Rv3364c
Rv3540c
Rv3541c
Rv3542c
Rv3577

Bicluster Conditions

MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
High.iron.wt.vs.low.iron.wt.1a
High.iron.wt.vs.low.iron.wt.2a
High.iron.wt.vs.low.iron.wt.2b
High.iron.wt.vs.low.iron.wt.3a
H37Rv.hypoxia.2hr.rep.1
H37Rv.hypoxia.2hr.rep.2
H37Rv.hypoxia.2hr.rep.3
H37Rv.hypoxia.2hr.rep.4
H37Rv.hypoxia.2hr.rep.5
NRP.Day6..1
NRP.Day6..2
NRP.Day6..3
NRP.Day8..1
NRP.Day8..2
NRP.Day8..3
NRP.Day10..3
NRP.Day14..1
NRP.Day14..6
NRP.Day14..7
NRP.Day14..9
NRP.Day20..1
NRP.Day20..2
NRP.Day30..1
Mtm.0.2ug.mL.vs.ctrl.8h.1.x
Mtm.0.2ug.mL.vs.ctrl.8h.2.x
Mtm.0.2ug.mL.vs.ctrl.12h.1.x
H37Rv.hypoxia.4hr.rep.3
H37Rv.hypoxia.4hr.rep.4
H37Rv.hypoxia.1.day.rep.4
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.4.day.rep.7
H37Rv.hypoxia.7.day.rep.3
SG2.A0_N02A01c3
SG2.B0_N02A09c3
SG2.D0_N02A01c5
SG6.G0_N5A02cy.5
SG6.H0_N5A03cy.5
SG6_A0_N7A10cy.3
SG6_B0_N7A10cy.5
SG7.AT0_N11A01cy.5
SG7.BT0_N11A02cy.5
SG7.CT0_N11A03cy.5
SG7.DT0_N11A04cy.5
SG8.B.Day.0.pre_N37A12cy.3
SG8.C.Day.0.post_N27A08cy.3
SG8.C.Day.0.pre_N27A07cy.3
SG8.C.Day.0.post_N37A10cy.5
SG8.D.Day.0.post_N27A11cy.3
SG.ISB.3.0C_N30A02cy.3
SG8.B.Day.1_N37A05cy.5
SG7.DT1_N11A08cy.5
SG6_B1_N7A11cy.5
SG2.D1_N02A02c5
SG2.B1_N02A10c3
SG2.A1_N02A02c3
SG8.A.Day.2_N37A08cy.3
SG8.B.Day.2_N37A06cy.5
SG2.A2_N02A03c3
SG8.A.Day.3_N37A09cy.3
SG8.B.Day.3_N37A07cy.5
SG8.A.Day.5_N37A10cy.3
SG8.B.Day.5_N37A08cy.5
SG2.A5_N02A05c3
SG2.D5_N02A05c5
SG2.D7_N02A06c5
SG6D.T7_N11A02cy.3
SG6C.T7_N11A01cy.3
SG6_B7_N7A12cy.5
SG6_A7_N7A12cy.3
SG7.T7B_N11A09cy.5
SG7.T7C_N11A10cy.5
SG7.T7D_N11A11cy.5
SG8.B.Day.7_N37A09cy.5
SG8.A.Day.7_N37A11cy.3
SG.ISB.3.7A_N30A02cy.5
SG.ISB.3.7B_N30A03cy.3
SG.ISB.3.7C_N30A03cy.5
SG.ISB.3.7D_N30A04cy.3
SG12.C0_N32A05cy.5
SG12.B0_N32A09cy.3
SG12.A1_N32A02cy.3
SG12.B1_N32A10cy.3
SG12.C1_N32A06cy.5
SG12.B2_N32A11cy.3
SG12.C2_N32A07cy.5
SG12.B4_N32A12cy.3
SG12.C4_N32A08cy.5
SG12.A6_N32A05cy.3
SG12.C6_N32A09cy.5
SG12.B8_N32A02cy.5
SG12.C8_N32A10cy.5
SG2.A8_N02A07c3
SG2.B8_N02A11c5
SG2.D8_N02A07c5
SG6.D8_N5A09cy.5
SG6.B8_N5A07cy.5
SG6.A8_N5A06cy.5
SG7.T8C_N11A07cy.3
SG7.T8B_N11A06cy.3
SG7.T8A_N11A05cy.3
SG7.T8D_N11A08cy.3
SG.ISB.3.8C_N30A05cy.5
SG6.D11_N8A09cy.5
SG6.C11_N5A12cy.5
SG6.B11_N5A11cy.5
SG6.A11_N5A10cy.5
SG7.T12D_N11A12cy.3
SG7.T12C_N11A11cy.3
SG7.T12A_N11A09cy.3
SG12.B120_N32A04cy.5
SG12.A120_N32A08cy.3
SG.ISB.3.12B_N30A07cy.3
SG.ISB.3.12C_N30A07cy.5
SG.ISB.3.12D_N30A08cy.3
SG6.B14_N8A11cy.5
SG6.C14_N8A12cy.5
SG6D.T14_N11A04cy.3
X1ug.mL..59vsDMSO..6h
X10ug.mL..109vsDMSO..6h
X.109..0.1ug.mL..vs.DMSO..12h..GEO.acc.GSM28050.
X.109..1ug.mL..vs.DMSO..12h..replicate.1..GEO.ac.GSM28051.
X.109..1ug.mL..vs.DMSO..12h..replicate.2..GEO.acc.GSM28052.
X.241..1ug.mL..DMSO..12h..1
DIPED.5ug.mL.vs.DMSO.12h.1
DIPED.10ug.mL.vs.DMSO.12h.1
DIPED.10ug.mL.vs.DMSO.12h.2
Mtm.0.2ug.mL.vs.ctrl.8h.1.y
Mtm.0.2ug.mL.vs.ctrl.8h.2.y
Mtm.0.2ug.mL.vs.ctrl.12h.1.y
X0.1mg.mLTriclosanvsEtOH.6hB
X10ug.mL.TriclosanvsDMSO..6hA
X10ug.mL.TriclosanvsDMSO..6hB
X50ug.mL.Triclosan.DMSO..6h
EMB..10ug.mL..DMSO..12h
EMB.10ug.mL.vs.DMSO.12h.2
EMB.10ug.mL.vs.DMSO.12h.3
EMB.10ug.mL.vs.DMSO.12h.4
X0.2mg.mL.AmpvsEtOH..6hC
X0.5ug.mL.CervsEtOH..6h
X0.5ug.mL.CeruleninvsDMSO..6hA
X0.5ug.mL.CeruleninvsDMSO..6hB
X0.5ug.mL.CeruleninvsDMSO..6hC
X100ug.mL.Ceph.DMSO..6h
X40ug.mL.EtavsEtOH..6hA
X0.2ug.mL.INH.EtOH..6h
X130ug.mL.TLMvsDMSO..6h
X130ug.mL.TLMvsDMSO..6hA
X0.13mg.mL.TLMvsDMSO..6h
X0.13mg.mL.TLMvsDMSO..6hA
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1
X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.2
X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.1
X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1
X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.2
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.1
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.2
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.3
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.4
X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.1
MTB1254.3524.2._INH_20MIN
X0.2mg.ml.Ampicillin.vs.Ethanol.6hrs
H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.1
H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.2
H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.1
H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.2
H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.1
H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.2
H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.1
H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.DS.rep.1
H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.DS.rep.2
H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.1
H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.2

Column members cluster 552f93a7b744335b89d79730 Species (TODO)

MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
High.iron.wt.vs.low.iron.wt.1a
High.iron.wt.vs.low.iron.wt.2a
High.iron.wt.vs.low.iron.wt.2b
High.iron.wt.vs.low.iron.wt.3a
H37Rv.hypoxia.2hr.rep.1
H37Rv.hypoxia.2hr.rep.2
H37Rv.hypoxia.2hr.rep.3
H37Rv.hypoxia.2hr.rep.4
H37Rv.hypoxia.2hr.rep.5
NRP.Day6..1
NRP.Day6..2
NRP.Day6..3
NRP.Day8..1
NRP.Day8..2
NRP.Day8..3
NRP.Day10..3
NRP.Day14..1
NRP.Day14..6
NRP.Day14..7
NRP.Day14..9
NRP.Day20..1
NRP.Day20..2
NRP.Day30..1
Mtm.0.2ug.mL.vs.ctrl.8h.1.x
Mtm.0.2ug.mL.vs.ctrl.8h.2.x
Mtm.0.2ug.mL.vs.ctrl.12h.1.x
H37Rv.hypoxia.4hr.rep.3
H37Rv.hypoxia.4hr.rep.4
H37Rv.hypoxia.1.day.rep.4
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.4.day.rep.7
H37Rv.hypoxia.7.day.rep.3
SG2.A0_N02A01c3
SG2.B0_N02A09c3
SG2.D0_N02A01c5
SG6.G0_N5A02cy.5
SG6.H0_N5A03cy.5
SG6_A0_N7A10cy.3
SG6_B0_N7A10cy.5
SG7.AT0_N11A01cy.5
SG7.BT0_N11A02cy.5
SG7.CT0_N11A03cy.5
SG7.DT0_N11A04cy.5
SG8.B.Day.0.pre_N37A12cy.3
SG8.C.Day.0.post_N27A08cy.3
SG8.C.Day.0.pre_N27A07cy.3
SG8.C.Day.0.post_N37A10cy.5
SG8.D.Day.0.post_N27A11cy.3
SG.ISB.3.0C_N30A02cy.3
SG8.B.Day.1_N37A05cy.5
SG7.DT1_N11A08cy.5
SG6_B1_N7A11cy.5
SG2.D1_N02A02c5
SG2.B1_N02A10c3
SG2.A1_N02A02c3
SG8.A.Day.2_N37A08cy.3
SG8.B.Day.2_N37A06cy.5
SG2.A2_N02A03c3
SG8.A.Day.3_N37A09cy.3
SG8.B.Day.3_N37A07cy.5
SG8.A.Day.5_N37A10cy.3
SG8.B.Day.5_N37A08cy.5
SG2.A5_N02A05c3
SG2.D5_N02A05c5
SG2.D7_N02A06c5
SG6D.T7_N11A02cy.3
SG6C.T7_N11A01cy.3
SG6_B7_N7A12cy.5
SG6_A7_N7A12cy.3
SG7.T7B_N11A09cy.5
SG7.T7C_N11A10cy.5
SG7.T7D_N11A11cy.5
SG8.B.Day.7_N37A09cy.5
SG8.A.Day.7_N37A11cy.3
SG.ISB.3.7A_N30A02cy.5
SG.ISB.3.7B_N30A03cy.3
SG.ISB.3.7C_N30A03cy.5
SG.ISB.3.7D_N30A04cy.3
SG12.C0_N32A05cy.5
SG12.B0_N32A09cy.3
SG12.A1_N32A02cy.3
SG12.B1_N32A10cy.3
SG12.C1_N32A06cy.5
SG12.B2_N32A11cy.3
SG12.C2_N32A07cy.5
SG12.B4_N32A12cy.3
SG12.C4_N32A08cy.5
SG12.A6_N32A05cy.3
SG12.C6_N32A09cy.5
SG12.B8_N32A02cy.5
SG12.C8_N32A10cy.5
SG2.A8_N02A07c3
SG2.B8_N02A11c5
SG2.D8_N02A07c5
SG6.D8_N5A09cy.5
SG6.B8_N5A07cy.5
SG6.A8_N5A06cy.5
SG7.T8C_N11A07cy.3
SG7.T8B_N11A06cy.3
SG7.T8A_N11A05cy.3
SG7.T8D_N11A08cy.3
SG.ISB.3.8C_N30A05cy.5
SG6.D11_N8A09cy.5
SG6.C11_N5A12cy.5
SG6.B11_N5A11cy.5
SG6.A11_N5A10cy.5
SG7.T12D_N11A12cy.3
SG7.T12C_N11A11cy.3
SG7.T12A_N11A09cy.3
SG12.B120_N32A04cy.5
SG12.A120_N32A08cy.3
SG.ISB.3.12B_N30A07cy.3
SG.ISB.3.12C_N30A07cy.5
SG.ISB.3.12D_N30A08cy.3
SG6.B14_N8A11cy.5
SG6.C14_N8A12cy.5
SG6D.T14_N11A04cy.3
X1ug.mL..59vsDMSO..6h
X10ug.mL..109vsDMSO..6h
X.109..0.1ug.mL..vs.DMSO..12h..GEO.acc.GSM28050.
X.109..1ug.mL..vs.DMSO..12h..replicate.1..GEO.ac.GSM28051.
X.109..1ug.mL..vs.DMSO..12h..replicate.2..GEO.acc.GSM28052.
X.241..1ug.mL..DMSO..12h..1
DIPED.5ug.mL.vs.DMSO.12h.1
DIPED.10ug.mL.vs.DMSO.12h.1
DIPED.10ug.mL.vs.DMSO.12h.2
Mtm.0.2ug.mL.vs.ctrl.8h.1.y
Mtm.0.2ug.mL.vs.ctrl.8h.2.y
Mtm.0.2ug.mL.vs.ctrl.12h.1.y
X0.1mg.mLTriclosanvsEtOH.6hB
X10ug.mL.TriclosanvsDMSO..6hA
X10ug.mL.TriclosanvsDMSO..6hB
X50ug.mL.Triclosan.DMSO..6h
EMB..10ug.mL..DMSO..12h
EMB.10ug.mL.vs.DMSO.12h.2
EMB.10ug.mL.vs.DMSO.12h.3
EMB.10ug.mL.vs.DMSO.12h.4
X0.2mg.mL.AmpvsEtOH..6hC
X0.5ug.mL.CervsEtOH..6h
X0.5ug.mL.CeruleninvsDMSO..6hA
X0.5ug.mL.CeruleninvsDMSO..6hB
X0.5ug.mL.CeruleninvsDMSO..6hC
X100ug.mL.Ceph.DMSO..6h
X40ug.mL.EtavsEtOH..6hA
X0.2ug.mL.INH.EtOH..6h
X130ug.mL.TLMvsDMSO..6h
X130ug.mL.TLMvsDMSO..6hA
X0.13mg.mL.TLMvsDMSO..6h
X0.13mg.mL.TLMvsDMSO..6hA
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1
X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.2
X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.1
X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1
X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.2
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.1
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.2
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.3
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.4
X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.1
MTB1254.3524.2._INH_20MIN
X0.2mg.ml.Ampicillin.vs.Ethanol.6hrs
H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.1
H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.2
H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.1
H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.2
H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.1
H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.2
H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.1
H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.DS.rep.1
H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.DS.rep.2
H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.1
H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.2