Bicluster – MTB EGRIN 2.0

ID: 552fa146b744335b89d7e219
# Conditions: 112
# Genes: 25
Residual: 0.42655342083176

Bicluster Motifs

Bicluster Genes

Rv0008c
Rv0068
Rv0116c
Rv0130
Rv0137c
Rv0420c
Rv0518
Rv0572c
Rv0731c
Rv0854
Rv0873
Rv0964c
Rv1143
Rv1176c
Rv1786
Rv2122c
Rv2329c
Rv2717c
Rv3013
Rv3090
Rv3232c
Rv3628
Rv3747
Rv3820c
Rv3851

Bicluster Conditions

X5ug.ml.KCN.vs.DMSO.6hrs.rep.1.x
X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.x
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
MTB.in.Wild.type.macrophages.for.24hrs
MTB.in.Wild.type.macrophages.for.48hrs
Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.2
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.1
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.5
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.5
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.3
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.3
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.4
X5ug.mL.AmivsEtOH..6h
X5ug.mL.AmivsEtOH..6hA
X10ug.mL.Amikacin.EtOH..6h
X5ug.mL.CapvsEtOH..6h
X5ug.mL.CapvsEtOH..6hA
X10ug.mL.CapvsEtOH..6h
X10ug.mL.capreomycinvsEtOH..6h
X5ug.mL.KCN.DMSO..6h..2
X10ug.mL.RoxvsEtOH..6h
X10ug.mL.RoxvsEtOH..6hA
X30ug.mL.RoxvsEtOH..6h
X30ug.mL.RoxvsEtOH..6hA
X50ug.mL.RoxvsEtOH..6h
X50ug.mL.RoxvsEtOH..6hA
X2ug.mL.SMvsEtOH..6hA
X5ug.mLStreptomycinvsEtOH.6hA
X5ug.mL.TetvsEtOH..6h
X10ug.mL.TetvsEtOH..6h
X10ug.mL.TetvsEtOH..6hA
X5ug.ml.KCN.vs.DMSO.6hrs.rep.1.y
X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.y
Tet_50ng_30M_01
X5ug.ml.Capreomycin.vs.Ethanol.6hrs.A
X10ug.ml.capreomycin.vs.Ethanol..6hrs

Column members cluster 552fa146b744335b89d7e219 Species (TODO)

X5ug.ml.KCN.vs.DMSO.6hrs.rep.1.x
X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.x
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
MTB.in.Wild.type.macrophages.for.24hrs
MTB.in.Wild.type.macrophages.for.48hrs
Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.2
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.1
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.5
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.5
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.3
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.3
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.4
X5ug.mL.AmivsEtOH..6h
X5ug.mL.AmivsEtOH..6hA
X10ug.mL.Amikacin.EtOH..6h
X5ug.mL.CapvsEtOH..6h
X5ug.mL.CapvsEtOH..6hA
X10ug.mL.CapvsEtOH..6h
X10ug.mL.capreomycinvsEtOH..6h
X5ug.mL.KCN.DMSO..6h..2
X10ug.mL.RoxvsEtOH..6h
X10ug.mL.RoxvsEtOH..6hA
X30ug.mL.RoxvsEtOH..6h
X30ug.mL.RoxvsEtOH..6hA
X50ug.mL.RoxvsEtOH..6h
X50ug.mL.RoxvsEtOH..6hA
X2ug.mL.SMvsEtOH..6hA
X5ug.mLStreptomycinvsEtOH.6hA
X5ug.mL.TetvsEtOH..6h
X10ug.mL.TetvsEtOH..6h
X10ug.mL.TetvsEtOH..6hA
X5ug.ml.KCN.vs.DMSO.6hrs.rep.1.y
X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.y
Tet_50ng_30M_01
X5ug.ml.Capreomycin.vs.Ethanol.6hrs.A
X10ug.ml.capreomycin.vs.Ethanol..6hrs