Bicluster

Bicluster Motifs

Bicluster Genes

• Rv0011c
• Rv0206c
• Rv0249c
• Rv0280
• Rv0510
• Rv0711
• Rv1005c
• Rv1021
• Rv1168c
• Rv1176c
• Rv1193
• Rv1457c
• Rv1665
• Rv1728c
• Rv2226
• Rv2295
• Rv2392
• Rv2418c
• Rv2431c
• Rv3093c
• Rv3095
• Rv3523
• Rv3645
• Rv3758c

Bicluster Conditions

• Strain.CDC1551..replicate.1
• Strain.CDC1551..replicate.2
• Strain.CDC1551..replicate.3
• Strain.CDC1551..replicate.4
• Strain.1006...replicate.1
• Strain.1006...replicate.2
• Strain.1006...replicate.3
• Strain.1254...replicate.4
• Strain.1254...replicate.2
• Strain.1254...replicate.3
• Strain.1843..replicate.1
• Strain.1843...replicate.2
• Strain.1843..replicate.4
• Strain.3160..replicate.1
• Strain.3160...replicate.3
• Strain.9700665..replicate.1
• Strain.9700665..replicate.3
• Strain.9700665..replicate.4
• Strain.9800608..replicate.2
• Strain.9800608..replicate.4
• Strain.9802501..replicate1
• Strain.9802501..replicate.3
• Strain.9802826..replicate.1
• Strain.M3061a..replicate.1
• Strain.M3061a..replicate.4
• H37Rv.Vs.M.bovis.rep3
• MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.1.x
• MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.2.x
• MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.3.x
• MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.4.x
• MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3.x
• MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.5.x
• MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.6.x
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.4
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.2
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.3
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.4
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.1.x
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3.x
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.1
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.2
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.4
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.2
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.2
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.3
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.4
• MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.1.x
• MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.2.x
• MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.3.x
• MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.4.x
• MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.1.x
• MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.2.x
• MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.3.x
• MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.4.x
• H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.1
• H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3
• H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4
• CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.1
• CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.2
• CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.4
• pH4.8vspH6.8..2h.
• pH4.8vspH6.8..2h.A
• pH4.8vspH6.8..4h.A
• pH4.8vspH6.8..4h.B
• pH4.8vspH6.8..5h.
• pH5.2vspH6.8..5h.
• pH5.6vspH6.8..2h.
• pH5.6vspH6.8..2h.A
• pH5.6vspH6.8..5h.
• pH5.6vspH6.8..11h.
• pH5.6vspH6.8..16h.
• X0.02mM.GSNOvsDMSO..6h
• X0.1mM.GSNOvsDMSO..4h
• X0.1mM.GSNO.DMSO..6h
• X0.1mM.GSNOvsDMSO..6h.
• X0.1ug.mL.Mtmvsctrl..0.33h..x
• X0.1ug.mL.Mtmvsctrl..0.75h..x
• X0.1ug.mL.Mtmvsctrl..1.5h..x
• X0.2ug.mL.Mtmvsctrl..0.33h..x
• X0.2ug.mL.Mtmvsctrl..0.75h..x
• X0.2ug.mL.Mtmvsctrl..1.5h..x
• X0.2ug.mL.Mtmvsctrl..2h..x
• X0.2ug.mL.Mtmvsctrl..2h.A.x
• X0.2ug.mL.Mtmvsctrl..4h.B.x
• X0.2ug.mL.Mtm.ctrl..4h...1.x
• Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
• Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
• Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
• Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
• Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
• Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
• Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
• Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
• Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3
• H37Rv.wild.type.Vs.H37Rv.wild.type.rep.3
• H37Rv.wild.type.Vs.H37Rv.wild.type.rep.4
• aceatate.induction.1
• Acetate.3mM.10m.01
• Acetate.3mM.10m.05
• Acetate.3mM.30m.05
• Acetate.3mM.30m.06
• Acetate.3mM.30m.07
• Acetate.3mM.30m.08
• Acetate.3mM.60m.04
• Starvation_1254_12h_01
• Starvation_1254_12h_02
• Starvation_1254_12h_03
• Starvation_1254_12h_04
• Starvation_1254_24h_01
• Starvation_1254_24h_02
• Starvation_1254_24h_03
• Starvation_1254_24h_04
• Starvation_1254_3d_01
• Starvation_1254_3d_02
• Starvation_1254_3d_03
• Starvation_1254_3d_04
• Starvation_1254_5d_02
• Starvation_1254_5d_04
• Starvation_1254_6h_01
• Starvation_1254_6h_03
• Starvation_1254_6h_05
• Starvation_1254_6h_06
• Starvation_1254_6h_08
• CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.3
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.1
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.2
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.3
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.4
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.1
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.2
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.4
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.5
• H37Rv.reaeration.for.1hrs.rep.1
• H37Rv.reaeration.for.1hrs.rep.2
• H37Rv.reaeration.for.1hrs.rep.3
• H37Rv.reaeration.for.1hrs.rep.5
• H37Rv.reaeration.for.1hrs.rep.6
• H37Rv.reaeration.for.1hrs.rep.8
• H37Rv.reaeration.for.4hrs.rep.1
• H37Rv.reaeration.for.4hrs.rep.2
• H37Rv.reaeration.for.4hrs.rep.3
• H37Rv.reaeration.for.4hrs.rep.4
• H37Rv.reaeration.for.4hrs.rep.5
• H37Rv.reaeration.for.4hrs.rep.6
• H37Rv.reaeration.for.4hrs.rep.7
• H37Rv.reaeration.for.6hrs.rep.1
• H37Rv.reaeration.for.6hrs.rep.2
• H37Rv.reaeration.for.6hrs.rep.3
• H37Rv.reaeration.for.6hrs.rep.4
• H37Rv.reaeration.for.6hrs.rep.5
• H37Rv.reaeration.for.12hrs.rep.1
• H37Rv.reaeration.for.12hrs.rep.3
• H37Rv.reaeration.for.12hrs.rep.4
• H37Rv.reaeration.for.12hrs.rep.5
• H37Rv.reaeration.for.12hrs.rep.6
• H37Rv.reaeration.for.24hrs.rep.3
• H37Rv.reaeration.for.24hrs.rep.5
• H37Rv.reaeration.for.24hrs.rep.6
• Mtb.response.to.pH.5.5..6.replicates.
• Mtb.response.to.pH.6.5..6.replicates.
• BCG.2hr.phagosomal.profile
• M..tuberculosis.CDC1551.2hr.phagosome.expression.profile
• M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
• MTB.in.Wild.type.macrophages.for.4hrs
• MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.1.y
• MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.2.y
• MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.3.y
• MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.4.y
• MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.1.y
• MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.2
• MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3.y
• MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4
• MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.5.y
• MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.6.y
• MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.7.y
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.1.y
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.2.y
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.4hrs.rep.1
• MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.3.y
• MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.2.y
• MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.4.y
• MTB.strain1254.vs.MTB.strain.1254.for.DETA.NO.exp.control.rep.1
• MTB.strain1254.vs.MTB.strain.1254.for.DETA.NO.exp.control.rep.2
• MTB.strain1254.vs.MTB.strain.1254.for.DETA.NO.exp.control.rep.3
• MTB.strain1254.vs.MTB.strain.1254.for.DETA.NO.exp.control.rep.4
• Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
• Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
• Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
• Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
• WT_140mM_NaCl_Rep1
• WT_140mM_NaCl_Rep2
• WT_140mM_NaCl_Rep3
• WT_140mM_NaCl_Rep4
• hip.mutant.KL2801..biological.rep1
• hip.mutant.KL2801..biological.rep2
• hip.mutant.KL2825..biological.rep1
• hip.mutant.KL2825..biological.rep2
• hip.mutant.KL2849..biological.rep1
• hip.mutant.KL2849..biological.rep2
• hip.mutant.HTS1090..biological.rep1
• hip.mutant.HTS1090..biological.rep2
• hip.mutant.HTS1105..biological.rep2
• hip.mutant.HT1116..biological.rep1
• hip.mutant.HT1117..biological.rep1
• hip.mutant.HT1120..biological.rep1
• hip.mutant.HT1120..biological.rep2
• hip.mutant.HT1130..biological.rep1
• hip.mutant.HT1134..biological.rep1
• hip.mutant.HT1134..biological.rep2
• hip.mutant.HT1137..biological.rep1
• hip.mutant.HT1137..biological.rep2
• hip.mutant.HT1170..biological.rep1
• hip.mutant.HT1170..biological.rep2
• X1ug.mL..59vsDMSO..6h
• X1ug.mL..59vsDMSO..6hA
• X10ug.mL..59vsDMSO..6h
• X10ug.mL..59vsDMSO..6hA
• X1ug.mL..109vsDMSO..6h
• X1ug.mL..109vsDMSO..6hA
• X10ug.mL..109vsDMSO..6h
• X10ug.mL..109vsDMSO..6hA
• X.109..10ug.mL..vs.DMSO..12h..replicate.1..GEO.acc..GSM28053.
• X.109..10ug.mL..DMSO..12h..replicate.2..GEO.acc..GSM28054.
• X1ug.mL..241vsDMSO..6h
• X1ug.mL..241vsDMSO..6hA
• X10ug.mL..241vsDMSO..6h
• X.241..1ug.mL..DMSO..12h..1
• DIPED.10ug.mL.vs.DMSO.12h.1
• DIPED.10ug.mL.vs.DMSO.12h.2
• DIPED..50ug.mL..DMSO..12h
• DIPED..100ug.mL..DMSO..12h..1
• X0.2ug.mL.Mtmvsctrl..2h..y
• X0.2ug.mL.Mtmvsctrl..2h.A.y
• X0.2ug.mL.Mtmvsctrl..2h.C.y
• X0.2ug.mL.Mtm.ctrl..4h...1.y
• X0.1mg.mL.TriclosanvsEtOH..6hA
• X0.15mg.mL.TricvsEtOH..6hA
• X10ug.mL.TriclosanvsDMSO..6h
• X10ug.mL.TriclosanvsDMSO..6hA
• X100ug.mL.TriclosanvsEtOH..6hA
• X10ug.mL.EMBvsDMSO..6h
• X10ug.mL.EMBvsDMSO..6hA
• EMB.10ug.mL.vs.DMSO.12h.2
• EMB.10ug.mL.vs.DMSO.12h.4
• X20ug.mL.ethambutol.DMSO
• X0.5ug.mL.CeruleninvsDMSO..6hC
• X20ug.mL.Cephalexin.Ctrl..6h..1
• X100ug.mL.Ceph.DMSO..6h
• X40ug.mL.EtavsEtOH..6h
• X40ug.mL.EtavsEtOH..6hA
• X0.4ug.mL.INHvsEtOH..6h
• X10ug.mL.Nvb.DMSO..6h..2
• X10ug.mL.OfloxvsDMSO..6h
• H37Rv.Ctrl.vs.5.ug.ml.garlic.extract.6hrs
• X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.1
• X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.2
• X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.x
• X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1
• X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
• X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.1
• X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.2
• X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.1
• MTB1254.3524.2._INH_20MIN
• X0.2mg.ml.Ampicillin.vs.Ethanol.6hrs
• H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
• H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
• H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
• H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
• H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
• H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
• H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
• H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
• H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
• H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.1
• H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.2
• H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.DS.rep.1
• H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.DS.rep.2
• H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.1