Bicluster

Bicluster Motifs

Bicluster Genes

• Rv0086
• Rv0087
• Rv0106
• Rv0295c
• Rv0362
• Rv0514
• Rv0536
• Rv0538
• Rv0539
• Rv0550c
• Rv0563
• Rv0625c
• Rv0669c
• Rv0744c
• Rv0851c
• Rv1010
• Rv1022
• Rv1730c
• Rv1941
• Rv2870c
• Rv2872

Bicluster Conditions

• Strain.CDC1551..replicate.2
• Strain.CDC1551..replicate.3
• Strain.1006...replicate.2
• Strain.1006...replicate.3
• Strain.1254...replicate.2
• Strain.1254...replicate.3
• Strain.1254...replicate.1
• Strain.1843..replicate.1
• Strain.3160..replicate.1
• Strain.3160..replicate.2
• Strain.3160..replicate.4
• Strain.9700665..replicate.4
• Strain.9800608...replicate.3
• Strain.9802501..replicate1
• Strain.9802826..replicate.1
• Strain.9802826..replicate.2
• Strain.9802826..replicate.3
• Strain.M3061a..replicate.4
• Mtm.0.2ug.mL.vs.ctrl.8h.2.x
• Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
• Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
• Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3
• Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
• Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
• Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
• X20ug.ml.KCN.vs.DMSO.6hrs.x
• Starvation_1254_24h_02
• Starvation_1254_5d_01
• Starvation_1254_5d_03
• Starvation_1254_6h_02
• Starvation_1254_6h_04
• CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.3
• Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
• H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.1
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.4
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.1
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.2
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.5
• Mtb.Erdman.strain.200.ppm.CO.rep.2
• Mtb.Erdman.strain.2000.ppm.CO.rep.1
• MTB.in.Wild.type.macrophages.for.4hrs
• MTB.in.Wild.type.macrophages.for.24hrs
• MTB.in.Wild.type.macrophages...IFNg.for.4hrs
• MTB.in.Wild.type.macrophages...IFNg.for.24hrs
• MTB.in.Wild.type.macrophages...IFNg.for.48hrs
• Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
• Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
• Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
• Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
• Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
• Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
• hip.mutant.KL2825..biological.rep1
• hip.mutant.HTS1105..biological.rep2
• hip.mutant.HT1116..biological.rep1
• hip.mutant.HT1116..biological.rep2
• hip.mutant.HT1120..biological.rep2
• hip.mutant.HT1130..biological.rep2
• hip.mutant.HT1137..biological.rep1
• hip.mutant.HT1137..biological.rep2
• hip.mutant.HT1170..biological.rep1
• X40ug.mL.5CL.pH5.6..2h..1
• X40ug.mL.5CL.pH5.6..2h..2
• X40ug.mL.5CL.pH5.6..4h..1
• X40ug.mL.5CL.pH5.6..4h..3
• X80ug.mL.5CL.pH5.6..2h.
• X0.12mg.mL.BZA.pH5.6..2h.
• X0.12mg.mL.BZA.pH5.6..4h..1
• X0.12mg.mL.BZA.pH5.6..4h..2
• X0.12mg.mL.BZAvspH5.6..5h.
• X0.12mg.mL.BZAvspH5.6..7h.
• X0.12mg.mL.BZAvspH5.6..11h.
• X0.12mg.mL.Nam.pH5.6..2h..1
• X0.12mg.mL.Nam.pH5.6..2h..2
• X0.12mg.mL.Nam.pH5.6..4h..1
• X0.12mg.mL.Nam.pH5.6..4h..2
• X0.12mg.mL.NamvspH5.6..4h.
• X0.12mg.mL.NamvspH5.6..5.5h.
• X0.12mg.mL.NamvspH5.6..7h.
• X1.2mg.mL.NamvspH5.6..5h.
• X1.2mg.mL.NamvspH5.6..10.5h.
• X0.12mg.mL.PZA.pH5.6..2h.
• X0.12mg.mL.PZA.pH5.6..4h..1
• X0.12mg.mL.PZA.pH5.6..4h..2
• X0.12mg.mL.PZAvspH5.6..4h.
• X0.12mg.mL.PZAvspH5.6..4h.A
• X0.12mg.mL.PZA.pH5.6..5h.
• X0.12mg.mL.PZAvspH5.6..5.5h.
• X0.12mg.mL.PZAvspH5.6..6h.
• X0.12mg.mL.PZAvspH5.6..6h.A
• X0.12mg.mL.PZAvspH5.6..11h.
• X1.2mg.mL.PZAvspH5.6..4h.
• X1.2mg.mL.PZAvspH5.6..4h.A
• X1.2mg.mL.PZA.pH5.6..5h.
• X1.2mg.mL.PZAvspH5.6..6h.
• X1.2mg.mL.PZAvspH5.6..6h.A
• X1.2mg.mL.PZAvspH5.6..7h.
• X1.2mg.mL.PZAvspH5.6..7h.A
• X1.2mg.mL.PZAvspH5.6..10.5h.
• X0.1mMGSNO.10ug.mLmdvsDMSO.6h
• X0.1mMGSNO.10ug.mLmdvsDMSO.6hA
• X0.1mMGSNO.20ug.mLCPZvsDMSO.6h
• X0.1mMGSNO.20ug.mLCPZvsDMSO.6hA
• X25ug.mLCPZ.0.1mMGSNO.DMSO..1
• X25ug.mLCPZ.0.1mMGSNO.DMSO..3
• X25ug.mLCPZ.0.1mMGSNOvsDMSO.A
• X5ug.mL.CFZ.0.1mM.GSNO.DMSO..1
• X5ug.mL.CFZ.0.1mM.GSNO.DMSO..2
• X5ug.mLCFZ.0.1mMGSNOvsDMSO.A
• X0.1mMGSNO.5ug.mLKCNvsDMSO.6h
• X0.1mMGSNO.5ug.mLKCNvsDMSO.6h.A
• Mtm.0.2ug.mL.vs.ctrl.8h.2.y
• Mtm.0.2ug.mL.vs.ctrl.12h.1.y
• X24ug.mL.Econazole.DMSO..6h..1
• X24ug.mL.Econazole.DMSO..6h..2
• X10ug.mL.clofazimine.DMSO..6h
• X13ug.mL.clfzine.DMSO..6h..1
• X10ug.mLchlorpromazinevsctrl.6h
• X10ug.mLchlorpromazinevsctrl.6hA
• X20ug.mL.CPZvsDMSO..6h
• X20ug.mL.CPZvsDMSO..6h.A
• X25ug.mL.CPZvsDMSO..6h.A
• X25ug.mL.CPZvsDMSO..6h.B
• X50uM.CCCP.DMSO..6h..1
• X50uM.CCCPvsDMSO..6h
• X0.5mM.DNP.DMSO..6h
• X1mM.DNP.DMSO..6h..2
• X20uM.DCCD.DMSO..6h..2
• X100uM.DCCD.DMSO..6h
• X2mM.DTTvsDMSO..6h.A
• X5ug.mL.KCN.DMSO..6h..1
• X5ug.mL.KCN.DMSO..6h..2
• X6ug.mL.MenadionevsDMSO..6h
• X10ug.mL.menadionevsDMSO..6h
• X10ug.mLmnd.Dubos.vsDMSO.6h
• X10ug.mLmdn.0.1mMGSNO.DMSO..2
• X50uM.NigericinvsDMSO..6h
• X50uM.NigericinvsDMSO..6h.A
• X10ug.mL.TRZ.DMSO..6h..1
• X10ug.mL.TRZ.DMSO..6h..2
• X50ug.mL.Thioridazine.DMSO..6h
• X0.5uMValinomycinvsDMSO.6h
• X1uM.ValinomycinvsDMSO..6h
• X1uM.ValinomycinvsDMSO..6h.A
• X1uM.ValinomycinvsDMSO..6h.B
• X10uM.ValinomycinvsDMSO..6h
• X0.5uMValinomycin.70mMKClvsDMSO.6h
• X2mM.ZnSO4.DMSO..6h
• CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.2
• CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.2
• CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.2
• CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.2
• CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.1
• CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.2
• CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.1
• CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.2