Bicluster

Bicluster Motifs

Bicluster Genes

• Rv0256c
• Rv0309
• Rv0518
• Rv0580c
• Rv0888
• Rv1070c
• Rv1261c
• Rv1498c
• Rv1501
• Rv1690
• Rv1880c
• Rv1903
• Rv1908c
• Rv1984c
• Rv1987
• Rv2187
• Rv2301
• Rv2348c
• Rv3142c
• Rv3316
• Rv3633
• Rv3669
• Rv3846

Bicluster Conditions

• Strain.CDC1551..replicate.1
• Strain.CDC1551..replicate.2
• Strain.CDC1551..replicate.3
• Strain.CDC1551..replicate.4
• Strain.1006...replicate.2
• Strain.1006...replicate.3
• Strain.1006...replicate.4
• Strain.1254...replicate.4
• Strain.1843..replicate.1
• Strain.1843...replicate.3
• Strain.3160...replicate.3
• Strain.9700665..replicate.3
• Strain.9800608..replicate.4
• Strain.9802501..replicate1
• Strain.9802501..replicate.4
• Strain.9802826..replicate.1
• Strain.9802826..replicate.2
• Strain.M3061a..replicate.2
• Strain.M3061a..replicate.3
• Strain.M3061a..replicate.4
• H37Rv.Vs.M.bovis.rep1
• H37Rv.Vs.M.bovis.rep2
• H37Rv.Vs.M.bovis.rep4
• H37Rv.0.05..SDS.exposure.for.1h.rep.1
• H37Rv.0.05..SDS.exposure.for.1h.rep.2
• H37Rv.0.05..SDS.exposure.for.1h.rep.3
• H37Rv.0.05..SDS.exposure.for.1h.rep.4
• H37Rv.vs..H37Rv.SDS.treated.rep.1
• H37Rv.vs..H37Rv.SDS.treated.rep.2
• H37Rv.vs..H37Rv.SDS.treated.rep.3
• H37Rv.vs..H37Rv.SDS.treated.rep.4
• H37Rv.vs..H37Rv.SDS.treated.rep.5
• H37Rv.vs..H37Rv.SDS.treated.rep.6
• H37Rv.hypoxia.2hr.rep.1
• H37Rv.hypoxia.2hr.rep.5
• H37Rv.hypoxia.2hr.rep.6
• NRP.Day20..1
• NRP.Day20..2
• H37Rv.hypoxia.4hr.rep.1
• H37Rv.hypoxia.4hr.rep.2
• H37Rv.hypoxia.4hr.rep.3
• H37Rv.hypoxia.4hr.rep.5
• H37Rv.hypoxia.4hr.rep.6
• H37Rv.hypoxia.4hr.rep.7
• H37Rv.hypoxia.8hr.rep.1
• H37Rv.hypoxia.8hr.rep.2
• H37Rv.hypoxia.1.day.rep.3
• H37Rv.hypoxia.1.day.rep.4
• H37Rv.hypoxia.1.day.rep.5
• H37Rv.hypoxia.4.day.rep.1
• H37Rv.hypoxia.4.day.rep.3
• H37Rv.hypoxia.4.day.rep.7
• H37Rv.hypoxia.7.day.rep.3
• H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
• H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
• H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3
• H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
• H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
• H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
• Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
• Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
• Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
• Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
• Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
• Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
• Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
• Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
• Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3
• Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
• H37Rv.wild.type.Vs.H37Rv.wild.type.rep.1
• H37Rv.wild.type.Vs.H37Rv.wild.type.rep.3
• H37Rv.wild.type.Vs.H37Rv.wild.type.rep.4
• H37Rv.wild.type.Vs.H37Rv.wild.type.rep.6
• H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2
• H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.3
• H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.5
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
• MTB1254_SDS_90MIN_01
• MTB1254_SDS_90MIN_02
• MTB1254_SDS_90MIN_03
• MTB1254_SDS_90MIN_04
• SDS_3h_01
• SDS_60min_01
• Starvation_1254_OA50_12h_01
• Starvation_1254_OA50_24h_02
• Starvation_1254_OA50_3d_04
• Starvation_1254_OA50_5d_01
• Starvation_1254_OA50_5d_04
• Starvation_1254_PA50_24h_01
• Starvation_1254_PA50_24h_03
• Starvation_OA50_6h_01
• Starvation_OA50_6h_03
• CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.1
• Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
• H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.3
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.4
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.1
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.2
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.3
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.4
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.5
• M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
• MTB.in.Wild.type.macrophages.for.24hrs
• MTB.in.Wild.type.macrophages.for.48hrs
• MTB.in.Wild.type.macrophages...IFNg.for.4hrs
• MTB.in.Wild.type.macrophages...IFNg.for.24hrs
• MTB.in.Wild.type.macrophages...IFNg.for.48hrs
• Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
• Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
• Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
• Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
• Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
• Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
• SG2.A0_N02A01c3
• SG2.B0_N02A09c3
• SG2.D0_N02A01c5
• SG6.H0_N5A03cy.5
• SG6_A0_N7A10cy.3
• SG7.AT0_N11A01cy.5
• SG8.A.Day.0.pre_fix_N37A04cy.5
• SG8.B.Day.0.pre_N37A12cy.3
• SG8.C.Day.0.post_N27A08cy.3
• SG8.D.Day.0.pre_N27A10cy.3
• SG8.C.Day.0.post_N37A10cy.5
• SG8.D.Day.0.post_N27A11cy.3
• SG.ISB.3.0A_N30A01cy.3
• SG8.C.Day.1_N37A11cy.5
• SG8.C.Day.1_N27A09cy.3
• SG8.D.Day.1_N27A12cy.3
• SG8.B.Day.1_N37A05cy.5
• SG8.A.Day.1_fix_N37A03cy.5
• SG7.DT1_N11A08cy.5
• SG7.CT1_N11A07cy.5
• SG7.BT1_N11A06cy.5
• SG7.AT1_N11A05cy.5
• SG6_B1_N7A11cy.5
• SG6_A1_N7A11cy.3
• SG6.D1_N5A05cy.5
• SG2.B1_N02A10c3
• SG2.A1_N02A02c3
• SG8.B.Day.2_N37A06cy.5
• SG2.A2_N02A03c3
• SG2.B2_N02A11c3
• SG2.A3_N02A04c3
• SG2.B3_N02A12c3
• SG2.D3_N02A04c5
• SG8.A.Day.5_N37A10cy.3
• SG2.B5_N02A09c5
• SG2.B7_N02A10c5
• SG2.A7_N02A06c3
• SG6D.T7_N11A02cy.3
• SG7.T7B_N11A09cy.5
• SG7.T7D_N11A11cy.5
• SG8.A.Day.7_N37A11cy.3
• SG.ISB.3.7A_N30A02cy.5
• SG.ISB.3.7C_N30A03cy.5
• SG12.A0_N32A01cy.3
• SG12.A1_N32A02cy.3
• SG12.B1_N32A10cy.3
• SG12.C1_N32A06cy.5
• SG12.A2_N32A03cy.3
• SG12.C2_N32A07cy.5
• SG12.A4_N32A04cy.3
• SG12.B4_N32A12cy.3
• SG12.A6_N32A05cy.3
• SG12.B6_N32A01cy.5
• SG12.A8_N32A06cy.3
• SG12.B8_N32A02cy.5
• SG12.C8_N32A10cy.5
• SG12.C24_N32A11cy.5
• SG12.B24_N32A03cy.5
• SG2.A8_N02A07c3
• SG2.D8_N02A07c5
• SG6.D8_N5A09cy.5
• SG6.A8_N5A06cy.5
• SG7.T8C_N11A07cy.3
• SG7.T8D_N11A08cy.3
• SG2.A9_N02A08c3
• SG2.B9_N02A12c5
• SG2.D9_N02A08c5
• SG6.D11_N8A09cy.5
• SG6.C11_N5A12cy.5
• SG6.A11_N5A10cy.5
• SG7.T12D_N11A12cy.3
• SG7.T12B_N11A10cy.3
• SG7.T12A_N11A09cy.3
• SG12.C120_N32A12cy.5
• SG12.B120_N32A04cy.5
• SG12.A120_N32A08cy.3
• SG.ISB.3.12A_N30A06cy.5
• SG.ISB.3.12B_N30A07cy.3
• SG.ISB.3.12C_N30A07cy.5
• SG.ISB.3.12D_N30A08cy.3
• SG6D.T14_N11A04cy.3
• WT_140mM_NaCl_Rep3
• WT_140mM_NaCl_Rep4
• hip.mutant.KL2801..biological.rep1
• hip.mutant.KL2825..biological.rep2
• hip.mutant.KL2849..biological.rep1
• hip.mutant.KL2849..biological.rep2
• hip.mutant.HTS1090..biological.rep2
• hip.mutant.HT1116..biological.rep1
• hip.mutant.HT1117..biological.rep1
• hip.mutant.HT1120..biological.rep2
• hip.mutant.HT1134..biological.rep1
• hip.mutant.HT1134..biological.rep2
• hip.mutant.HT1137..biological.rep1
• hip.mutant.HT1137..biological.rep2
• hip.mutant.HT1170..biological.rep1
• MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.1
• X0.1mMGSNO.10ug.mLmdvsDMSO.6h
• X25ug.mLCPZ.0.1mMGSNOvsDMSO.A
• X5ug.mL.CFZ.0.1mM.GSNO.DMSO..2
• X10ug.mL.EconazolevsEtOH..6h
• X24ug.mL.Econazole.DMSO..6h..1
• X10ug.mLchlorpromazinevsctrl.6h
• X20ug.mL.chlorprmz.DMSO..6h..1
• X25ug.mL.CPZvsDMSO..6h.B
• X10ug.mL.clotrimvsEtOH..6h
• X24ug.mL.cltrmazole.DMS..6h..2
• X10uM.CCCP.DMSO..6h
• X0.5mM.DNP.DMSO..6h
• X2mM.DTTvsDMSO..6h.A
• X50uM.NigericinvsDMSO..6h.A
• X10ug.mL.TRZ.DMSO..6h..2
• X0.5uMValinomycinvsDMSO.6h
• X1uM.ValinomycinvsDMSO..6h
• X1uM.ValinomycinvsDMSO..6h.A
• X1uM.ValinomycinvsDMSO..6h.B
• X10uM.ValinomycinvsDMSO..6h
• X0.5uMValinomycin.70mMKClvsDMSO.6h
• CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.2
• CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.1
• CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.1
• CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.2
• CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.1