Bicluster – MTB EGRIN 2.0

ID: 552effafb744335b89d41893
# Conditions: 166
# Genes: 42
Residual: 0.60194360371958

Bicluster Motifs

Bicluster Genes

Rv0026
Rv0078
Rv0224c
Rv0228
Rv0320
Rv0358
Rv0398c
Rv0413
Rv0492c
Rv0534c
Rv0535
Rv0577
Rv0738
Rv0851c
Rv0872c
Rv0942
Rv1043c
Rv1250
Rv1271c
Rv1330c
Rv1389
Rv1434
Rv1555
Rv1930c
Rv2090
Rv2261c
Rv2447c
Rv2551c
Rv2575
Rv2608
Rv2870c
Rv2985
Rv3026c
Rv3242c
Rv3371
Rv3383c
Rv3409c
Rv3662c
Rv3712
Rv3752c
Rv3897c
Rv3917c

Bicluster Conditions

MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
H37Rv.hypoxia.2hr.rep.2
H37Rv.hypoxia.2hr.rep.3
H37Rv.hypoxia.2hr.rep.5
H37Rv.hypoxia.2hr.rep.6
NRP.Day6..1
NRP.Day8..1
NRP.Day10..1
NRP.Day12..2
NRP.Day14..3
NRP.Day14..5
NRP.Day14..8
NRP.Day14..9
NRP.Day20..1
NRP.Day30..1
pH4.8vspH6.8..2h.A
pH4.8vspH6.8..4h.
pH4.8vspH6.8..4h.B
pH4.8vspH6.8..4h.C
pH4.8vspH6.8..5h.
pH4.8vspH6.8..5.5h.
pH4.8vspH6.8..6h.
pH4.8vspH6.8..7h.
pH5.2vspH6.8..5.5h.
pH5.2vspH6.8..10.5h.
pH5.2vspH6.8..16h.
pH5.6vspH6.8..11h.
pH5.6vspH6.8..16h.
H37Rv.hypoxia.4hr.rep.2
H37Rv.hypoxia.4hr.rep.3
H37Rv.hypoxia.4hr.rep.5
H37Rv.hypoxia.12hr.rep.3
H37Rv.hypoxia.1.day.rep.4
H37Rv.hypoxia.1.day.rep.7
H37Rv.hypoxia.4.day.rep.7
H37Rv.hypoxia.7.day.rep.2
aceatate.induction.3
Acetate.3mM.10m.01
Acetate.3mM.10m.02
Acetate.3mM.10m_04
Acetate.3mM.2h.03
Acetate.3mM.2h.05
Acetate.3mM.2h.06
Acetate.3mM.30m.01
Acetate.3mM.30m.06
Acetate.3mM.60m.01
Acetate.3mM.60m.03
Acetate.3mM.60m.04
Starvation_1254_12h_04
Starvation_1254_24h_01
Starvation_1254_24h_02
Starvation_1254_24h_04
Starvation_1254_24h_06
Starvation_1254_24h_07
Starvation_1254_24h_08
Starvation_1254_3d_02
Starvation_1254_3d_03
Starvation_1254_3d_04
Starvation_1254_5d_02
Starvation_1254_6h_02
Starvation_1254_6h_03
Starvation_1254_6h_04
Starvation_1254_6h_05
Starvation_1254_6h_06
Starvation_1254_6h_07
Starvation_1254_OA50_12h_02
Starvation_1254_OA50_12h_03
Starvation_1254_OA50_12h_04
Starvation_1254_OA50_24h_01
Starvation_1254_OA50_24h_02
Starvation_1254_OA50_24h_04
Starvation_1254_OA50_3d_01
Starvation_1254_OA50_3d_03
Starvation_1254_OA50_3d_04
Starvation_1254_OA50_5d_01
Starvation_1254_OA50_5d_02
Starvation_1254_OA50_5d_04
Starvation_1254_OA50_6h_01
Starvation_1254_OA50_6h_02
Starvation_1254_PA50_6h_02
Starvation_OA50_24h_01
Starvation_OA50_24h_02
Starvation_OA50_24h_03
Starvation_OA50_24h_04
Starvation_OA50_6h_01
Starvation_OA50_6h_02
Starvation_OA50_6h_03
SG2.A0_N02A01c3
SG6.G0_N5A02cy.5
SG7.AT0_N11A01cy.5
SG7.BT0_N11A02cy.5
SG7.CT0_N11A03cy.5
SG7.DT0_N11A04cy.5
SG8.A.Day.0.pre_fix_N37A04cy.5
SG8.B.Day.0.pre_N37A12cy.3
SG8.C.Day.0.post_N27A08cy.3
SG8.C.Day.0.pre_N27A07cy.3
SG8.D.Day.0.pre_N27A10cy.3
SG8.C.Day.0.post_N37A10cy.5
SG8.D.Day.0.post_N27A11cy.3
SG.ISB.3.0A_N30A01cy.3
SG.ISB.3.0B_N30A01cy.5
SG.ISB.3.0C_N30A02cy.3
SG8.D.Day.1_N27A12cy.3
SG8.B.Day.1_N37A05cy.5
SG8.A.Day.1_fix_N37A03cy.5
SG7.DT1_N11A08cy.5
SG7.CT1_N11A07cy.5
SG7.BT1_N11A06cy.5
SG7.AT1_N11A05cy.5
SG6_B1_N7A11cy.5
SG6_A1_N7A11cy.3
SG8.A.Day.2_N37A08cy.3
SG8.C.Day.2_N37A12cy.5
SG2.A2_N02A03c3
SG2.B2_N02A11c3
SG2.B3_N02A12c3
SG8.A.Day.5_N37A10cy.3
SG8.B.Day.5_N37A08cy.5
SG2.A5_N02A05c3
SG2.D5_N02A05c5
SG6D.T7_N11A02cy.3
SG6C.T7_N11A01cy.3
SG7.T7B_N11A09cy.5
SG7.T7D_N11A11cy.5
SG8.B.Day.7_N37A09cy.5
SG8.A.Day.7_N37A11cy.3
SG.ISB.3.7B_N30A03cy.3
SG.ISB.3.7C_N30A03cy.5
SG.ISB.3.7D_N30A04cy.3
SG12.A1_N32A02cy.3
SG12.B1_N32A10cy.3
SG12.C1_N32A06cy.5
SG12.B2_N32A11cy.3
SG12.C2_N32A07cy.5
SG12.B4_N32A12cy.3
SG12.C4_N32A08cy.5
SG12.B8_N32A02cy.5
SG12.C8_N32A10cy.5
SG12.B24_N32A03cy.5
SG12.A24_N32A07cy.3
SG2.A8_N02A07c3
SG2.D8_N02A07c5
SG6.C8_N5A08cy.5
SG6.B8_N5A07cy.5
SG7.T8C_N11A07cy.3
SG7.T8A_N11A05cy.3
SG7.T8D_N11A08cy.3
SG.ISB.3.8B_N30A05cy.3
SG6.D11_N8A09cy.5
SG6.C11_N5A12cy.5
SG6.B11_N5A11cy.5
SG6.A11_N5A10cy.5
SG7.T12D_N11A12cy.3
SG7.T12C_N11A11cy.3
SG7.T12B_N11A10cy.3
SG7.T12A_N11A09cy.3
SG12.C120_N32A12cy.5
SG12.B120_N32A04cy.5
SG12.A120_N32A08cy.3
SG.ISB.3.12A_N30A06cy.5
SG.ISB.3.12B_N30A07cy.3
SG.ISB.3.12C_N30A07cy.5
SG.ISB.3.12D_N30A08cy.3

Column members cluster 552effafb744335b89d41893 Species (TODO)

MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
H37Rv.hypoxia.2hr.rep.2
H37Rv.hypoxia.2hr.rep.3
H37Rv.hypoxia.2hr.rep.5
H37Rv.hypoxia.2hr.rep.6
NRP.Day6..1
NRP.Day8..1
NRP.Day10..1
NRP.Day12..2
NRP.Day14..3
NRP.Day14..5
NRP.Day14..8
NRP.Day14..9
NRP.Day20..1
NRP.Day30..1
pH4.8vspH6.8..2h.A
pH4.8vspH6.8..4h.
pH4.8vspH6.8..4h.B
pH4.8vspH6.8..4h.C
pH4.8vspH6.8..5h.
pH4.8vspH6.8..5.5h.
pH4.8vspH6.8..6h.
pH4.8vspH6.8..7h.
pH5.2vspH6.8..5.5h.
pH5.2vspH6.8..10.5h.
pH5.2vspH6.8..16h.
pH5.6vspH6.8..11h.
pH5.6vspH6.8..16h.
H37Rv.hypoxia.4hr.rep.2
H37Rv.hypoxia.4hr.rep.3
H37Rv.hypoxia.4hr.rep.5
H37Rv.hypoxia.12hr.rep.3
H37Rv.hypoxia.1.day.rep.4
H37Rv.hypoxia.1.day.rep.7
H37Rv.hypoxia.4.day.rep.7
H37Rv.hypoxia.7.day.rep.2
aceatate.induction.3
Acetate.3mM.10m.01
Acetate.3mM.10m.02
Acetate.3mM.10m_04
Acetate.3mM.2h.03
Acetate.3mM.2h.05
Acetate.3mM.2h.06
Acetate.3mM.30m.01
Acetate.3mM.30m.06
Acetate.3mM.60m.01
Acetate.3mM.60m.03
Acetate.3mM.60m.04
Starvation_1254_12h_04
Starvation_1254_24h_01
Starvation_1254_24h_02
Starvation_1254_24h_04
Starvation_1254_24h_06
Starvation_1254_24h_07
Starvation_1254_24h_08
Starvation_1254_3d_02
Starvation_1254_3d_03
Starvation_1254_3d_04
Starvation_1254_5d_02
Starvation_1254_6h_02
Starvation_1254_6h_03
Starvation_1254_6h_04
Starvation_1254_6h_05
Starvation_1254_6h_06
Starvation_1254_6h_07
Starvation_1254_OA50_12h_02
Starvation_1254_OA50_12h_03
Starvation_1254_OA50_12h_04
Starvation_1254_OA50_24h_01
Starvation_1254_OA50_24h_02
Starvation_1254_OA50_24h_04
Starvation_1254_OA50_3d_01
Starvation_1254_OA50_3d_03
Starvation_1254_OA50_3d_04
Starvation_1254_OA50_5d_01
Starvation_1254_OA50_5d_02
Starvation_1254_OA50_5d_04
Starvation_1254_OA50_6h_01
Starvation_1254_OA50_6h_02
Starvation_1254_PA50_6h_02
Starvation_OA50_24h_01
Starvation_OA50_24h_02
Starvation_OA50_24h_03
Starvation_OA50_24h_04
Starvation_OA50_6h_01
Starvation_OA50_6h_02
Starvation_OA50_6h_03
SG2.A0_N02A01c3
SG6.G0_N5A02cy.5
SG7.AT0_N11A01cy.5
SG7.BT0_N11A02cy.5
SG7.CT0_N11A03cy.5
SG7.DT0_N11A04cy.5
SG8.A.Day.0.pre_fix_N37A04cy.5
SG8.B.Day.0.pre_N37A12cy.3
SG8.C.Day.0.post_N27A08cy.3
SG8.C.Day.0.pre_N27A07cy.3
SG8.D.Day.0.pre_N27A10cy.3
SG8.C.Day.0.post_N37A10cy.5
SG8.D.Day.0.post_N27A11cy.3
SG.ISB.3.0A_N30A01cy.3
SG.ISB.3.0B_N30A01cy.5
SG.ISB.3.0C_N30A02cy.3
SG8.D.Day.1_N27A12cy.3
SG8.B.Day.1_N37A05cy.5
SG8.A.Day.1_fix_N37A03cy.5
SG7.DT1_N11A08cy.5
SG7.CT1_N11A07cy.5
SG7.BT1_N11A06cy.5
SG7.AT1_N11A05cy.5
SG6_B1_N7A11cy.5
SG6_A1_N7A11cy.3
SG8.A.Day.2_N37A08cy.3
SG8.C.Day.2_N37A12cy.5
SG2.A2_N02A03c3
SG2.B2_N02A11c3
SG2.B3_N02A12c3
SG8.A.Day.5_N37A10cy.3
SG8.B.Day.5_N37A08cy.5
SG2.A5_N02A05c3
SG2.D5_N02A05c5
SG6D.T7_N11A02cy.3
SG6C.T7_N11A01cy.3
SG7.T7B_N11A09cy.5
SG7.T7D_N11A11cy.5
SG8.B.Day.7_N37A09cy.5
SG8.A.Day.7_N37A11cy.3
SG.ISB.3.7B_N30A03cy.3
SG.ISB.3.7C_N30A03cy.5
SG.ISB.3.7D_N30A04cy.3
SG12.A1_N32A02cy.3
SG12.B1_N32A10cy.3
SG12.C1_N32A06cy.5
SG12.B2_N32A11cy.3
SG12.C2_N32A07cy.5
SG12.B4_N32A12cy.3
SG12.C4_N32A08cy.5
SG12.B8_N32A02cy.5
SG12.C8_N32A10cy.5
SG12.B24_N32A03cy.5
SG12.A24_N32A07cy.3
SG2.A8_N02A07c3
SG2.D8_N02A07c5
SG6.C8_N5A08cy.5
SG6.B8_N5A07cy.5
SG7.T8C_N11A07cy.3
SG7.T8A_N11A05cy.3
SG7.T8D_N11A08cy.3
SG.ISB.3.8B_N30A05cy.3
SG6.D11_N8A09cy.5
SG6.C11_N5A12cy.5
SG6.B11_N5A11cy.5
SG6.A11_N5A10cy.5
SG7.T12D_N11A12cy.3
SG7.T12C_N11A11cy.3
SG7.T12B_N11A10cy.3
SG7.T12A_N11A09cy.3
SG12.C120_N32A12cy.5
SG12.B120_N32A04cy.5
SG12.A120_N32A08cy.3
SG.ISB.3.12A_N30A06cy.5
SG.ISB.3.12B_N30A07cy.3
SG.ISB.3.12C_N30A07cy.5
SG.ISB.3.12D_N30A08cy.3