Bicluster

Bicluster Motifs

Bicluster Genes

• Rv0110
• Rv0499
• Rv0508
• Rv0804
• Rv0882
• Rv1114
• Rv1401
• Rv1478
• Rv1570
• Rv1718
• Rv1719
• Rv2047c
• Rv2085
• Rv2395
• Rv2746c
• Rv2762c
• Rv2770c
• Rv2772c
• Rv3040c
• Rv3431c
• Rv3540c
• Rv3904c

Bicluster Conditions

• NRP.Day6..1
• NRP.Day6..3
• NRP.Day8..1
• NRP.Day8..2
• NRP.Day10..1
• NRP.Day10..2
• NRP.Day10..3
• NRP.Day12..1
• NRP.Day12..2
• NRP.Day12..3
• NRP.Day14..1
• NRP.Day14..2
• NRP.Day14..4
• NRP.Day14..6
• NRP.Day14..7
• NRP.Day14..8
• NRP.Day20..1
• NRP.Day30..1
• pH4.8vspH6.8..2h.
• pH4.8vspH6.8..2h.A
• pH4.8vspH6.8..2h.B
• pH4.8vspH6.8..4h.
• pH4.8vspH6.8..4h.C
• pH4.8vspH6.8..6h.
• pH4.8vspH6.8..7h.
• pH5.2vspH6.8..2h.
• pH5.2vspH6.8..5h.
• pH5.2vspH6.8..5.5h.
• pH5.2vspH6.8..10.5h.
• pH5.2vspH6.8..11h.
• pH5.2vspH6.8..16h.
• pH5.6vspH6.8..2h.A
• pH5.6vspH6.8..4h.B
• pH5.6vspH6.8..7h.
• pH5.6vspH6.8..11h.
• pH5.6vspH6.8..16h.
• X0.1ug.mL.Mtmvsctrl..0.33h..x
• X0.1ug.mL.Mtmvsctrl..0.75h..x
• X0.1ug.mL.Mtmvsctrl..1.5h..x
• X0.2ug.mL.Mtmvsctrl..0.33h..x
• X0.2ug.mL.Mtmvsctrl..0.75h..x
• X0.2ug.mL.Mtmvsctrl..1.5h..x
• X0.2ug.mL.Mtmvsctrl..2h..x
• X0.2ug.mL.Mtmvsctrl..2h.A.x
• X0.2ug.mL.Mtmvsctrl..2h.B.x
• X0.2ug.mL.Mtmvsctrl..2h.C.x
• X0.2ug.mL.Mtmvsctrl..4h.A.x
• X0.2ug.mL.Mtmvsctrl..4h.B.x
• X0.2ug.mL.Mtm.ctrl..4h...1.x
• X0.2ug.mL.Mtm.ctrl..4h...2.x
• H37Rv.hypoxia.4hr.rep.1
• H37Rv.hypoxia.4hr.rep.2
• H37Rv.hypoxia.4hr.rep.3
• H37Rv.hypoxia.12hr.rep.2
• H37Rv.hypoxia.1.day.rep.2
• H37Rv.hypoxia.1.day.rep.4
• H37Rv.hypoxia.1.day.rep.5
• H37Rv.hypoxia.1.day.rep.10
• H37Rv.hypoxia.4.day.rep.7
• H37Rv.hypoxia.7.day.rep.2
• H37Rv.hypoxia.7.day.rep.3
• H37Rv.hypoxia.7.day.rep.4
• X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.x
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
• Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
• H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
• Mtb.Erdman.strain.20.ppm.CO.rep.2
• Mtb.Erdman.strain.200.ppm.CO.rep.2
• Mtb.Erdman.strain.2000.ppm.CO.rep.2
• Mtb.response.to.pH.5.5..6.replicates.
• BCG.2hr.phagosomal.profile
• M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
• MTB.in.Wild.type.macrophages.for.4hrs
• MTB.in.Wild.type.macrophages...IFNg.for.4hrs
• MTB.in.Wild.type.macrophages...IFNg.for.24hrs
• Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
• Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
• Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
• Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
• Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
• Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
• Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
• SG6_A0_N7A10cy.3
• SG7.AT0_N11A01cy.5
• SG7.BT0_N11A02cy.5
• SG8.B.Day.0.pre_N37A12cy.3
• SG8.C.Day.0.post_N27A08cy.3
• SG8.C.Day.0.pre_N27A07cy.3
• SG.ISB.3.0A_N30A01cy.3
• SG8.C.Day.1_N27A09cy.3
• SG6.C1_N5A04cy.5
• SG2.A2_N02A03c3
• SG2.B2_N02A11c3
• SG8.A.Day.3_N37A09cy.3
• SG8.B.Day.3_N37A07cy.5
• SG8.B.Day.5_N37A08cy.5
• SG6D.T7_N11A02cy.3
• SG7.T7B_N11A09cy.5
• SG7.T7C_N11A10cy.5
• SG8.B.Day.7_N37A09cy.5
• SG8.A.Day.7_N37A11cy.3
• SG.ISB.3.7A_N30A02cy.5
• SG.ISB.3.7C_N30A03cy.5
• SG.ISB.3.7D_N30A04cy.3
• SG12.A0_N32A01cy.3
• SG12.C1_N32A06cy.5
• SG12.B2_N32A11cy.3
• SG12.C2_N32A07cy.5
• SG12.C6_N32A09cy.5
• SG12.C8_N32A10cy.5
• SG12.B24_N32A03cy.5
• SG6.D8_N5A09cy.5
• SG6.C8_N5A08cy.5
• SG6.D11_N8A09cy.5
• SG6.C11_N5A12cy.5
• SG6.B11_N5A11cy.5
• SG7.T12C_N11A11cy.3
• SG7.T12B_N11A10cy.3
• SG12.C120_N32A12cy.5
• SG12.B120_N32A04cy.5
• SG.ISB.3.12B_N30A07cy.3
• SG.ISB.3.12D_N30A08cy.3
• SG6.B14_N8A11cy.5
• WT_140mM_NaCl_Rep1
• WT_140mM_NaCl_Rep3
• WT_140mM_NaCl_Rep4
• MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.1
• MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.2
• MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3
• MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.4
• MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1
• MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.2
• MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.3
• MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.1
• MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.3
• MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.3
• MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.1
• MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.4
• MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.1
• MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.3
• MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.2
• MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.3
• MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.4
• MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.4
• MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.1
• MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.1
• MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.2
• MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.3
• MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.1
• MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.2
• MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.2
• MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.3
• MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.4
• MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.1
• MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.2
• MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.4
• MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.1
• MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.2
• MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.3
• MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.1
• MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.2
• MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.3
• MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.2
• MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.3
• MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.1
• MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.3
• MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.4
• MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.1
• MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.2
• MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.3
• MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.1
• MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.3
• MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.3
• MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.1
• MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.2
• MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.3
• MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.4
• MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.1
• MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.3
• MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.4
• MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.1
• MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.3
• MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.1
• MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.3
• MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.4
• MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.1
• MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.2
• MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.3
• MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.5
• X20ug.mL.Procept.6776vsDMSO..6h
• X20ug.mL.Procept6776vsDMSO..6h
• X30ug.mLProcept6776vsDMSO.6h
• X30ug.mLProcept6776vsDMSO.6hA
• X5ug.mLProcept.6778vsDMSO.6h
• X5ug.mLProcept.6778vsDMSO.6hA
• X20ug.mL.Prcp.6778.DMSO..6h..2
• X20ug.mLProcept6778vsDMSO.6h
• X20ug.mLProcept6778vsDMSO.6hA
• X20ug.mLProcept6778vsDMSO.6hB
• X40ug.mLProcept6778vsDMSO.6h
• X40ug.mLProcept6778vsDMSO.6hA
• X50ug.mL.PA.1vsDMSO..6h
• X10ug.mL.PA.21vsDMSO..6h
• X0.2ug.mL.PA824.DMSO..6h..1
• X0.2ug.mL.PA824.DMSO..6h..2
• X0.4ug.mL.PA824.DMSO..6h..3
• X0.1ug.mL.Mtmvsctrl..0.33h..y
• X0.1ug.mL.Mtmvsctrl..1.5h..y
• X0.2ug.mL.Mtmvsctrl..0.75h..y
• X0.2ug.mL.Mtmvsctrl..1.5h..y
• X0.2ug.mL.Mtmvsctrl..2h..y
• X0.2ug.mL.Mtmvsctrl..2h.B.y
• X0.2ug.mL.Mtmvsctrl..2h.C.y
• X0.2ug.mL.Mtmvsctrl..4h.A.y
• X0.2ug.mL.Mtm.ctrl..4h...1.y
• X0.2ug.mL.Mtm.ctrl..4h...2.y
• X0.2ug.mL.Mtmvsctrl..6h..y
• X5ug.mL.AmivsEtOH..6h
• X10ug.mL.Amikacin.EtOH..6h
• X12.5ug.mL.AntimycinvsDMSO..6h
• X25ug.mL.AntimycinvsDMSO..6h
• X50ug.mLAntimycinAvsDMSO..6hA
• X5ug.mL.CapvsEtOH..6h
• X10ug.mL.capreomycinvsEtOH..6h
• X5ug.mL.KCN.DMSO..6h..2
• X10ug.mL.LevovsEtOH..6hA
• X10ug.mL.methoxatinvsDMSO..6h.A
• X20ug.mL.methoxatinvsDMSO..6h
• X10ug.mL.Nvb.DMSO..6h..1
• X10ug.mL.Nvb.DMSO..6h..3
• X5ug.mL.OfloxvsEtOH..6h
• X5ug.mL.OfloxvsEtOH..6hA
• X10ug.mL.RoxvsEtOH..6h
• X30ug.mL.RoxvsEtOH..6hA
• X50ug.mL.RoxvsEtOH..6h
• X50ug.mL.RoxvsEtOH..6hA
• X2ug.mL.SMvsEtOH..6h
• X5ug.mLStreptomycinvsEtOH.6h
• X5ug.mLStreptomycinvsEtOH.6hA
• X5ug.mL.TetvsEtOH..6h
• X10ug.mL.TetvsEtOH..6h
• X10ug.mL.TetvsEtOH..6hA
• X50ug.mL.VerapamilvsDMSO..6h
• X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.y
• X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.1
• X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
• X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.1
• X2ug.ml.PA.824.vs.DMSO.6hrs.rep.1.x
• X2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
• Tet_20uM_30M_01
• X2ug.ml.PA.824.vs.DMSO.6hrs.rep.1.y
• X5ug.ml.Capreomycin.vs.Ethanol.6hrs.A
• X10ug.ml.capreomycin.vs.Ethanol..6hrs
• X5ug.ml.Streptomycin.vs.Ethanol.6hrs
• MTB.at.T0..biological.rep2
• MTB.at.T0..biological.rep3
• MTB.at.T0..biological.rep4
• MTB.at.T30..biological.rep1
• MTB.at.T30..biological.rep2
• MTB.at.T30..biological.rep3
• MTB.at.T60..biological.rep2
• MTB.at.T360..biological.rep1
• MTB.at.T360..biological.rep2
• MTB.at.T360..biological.rep3
• MTB.at.T360..biological.rep4