Bicluster – MTB EGRIN 2.0

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Call Stack
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15	0.9089	7749456	bicluster_motifs_shortcode( )	.../shortcodes.php:433
16	0.9090	7749584	file_get_contents ( )	.../short_codes.php:74

ID: 552f06a3b744335b89d44873
# Conditions: 145
# Genes: 22
Residual: 0.35531098628313

Bicluster Motifs

Bicluster Genes

Rv0062
Rv0448c
Rv0449c
Rv0600c
Rv0616c
Rv0689c
Rv0974c
Rv1189
Rv1190
Rv1273c
Rv1354c
Rv1579c
Rv1580c
Rv1581c
Rv1937
Rv1973
Rv1974
Rv2401
Rv2424c
Rv3447c
Rv3448
Rv3652

Bicluster Conditions

Whole.Lung.Surfactant.30min.rep.3
Extracted.Lung.Surfactant.2hrs.rep.1
Extracted.Lung.Surfactant.30min.rep.2
Extracted.Lung.Surfactant.30min.rep.4
Purified.Surfactant.Lipids.2hrs.rep.1
Purified.Human.SP.A.Coated.2hrs.rep1
Purified.Human.SP.A.Uncoated.2hrs.rep1
Purified.Human.SP.A.Uncoated.2hrs.rep2
Purified.Human.SP.A.Uncoated.2hrs.rep4
X20ug.ml.KCN.vs.DMSO.6hrs.x
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
aceatate.induction.2
Acetate.3mM.10m.03
Acetate.3mM.10m.05
Acetate.3mM.10m_04
Acetate.3mM.2h.02
Acetate.3mM.2h.04
Acetate.3mM.2h.06
Acetate.3mM.30m.01
Acetate.3mM.30m.02
Acetate.3mM.30m.03
Acetate.3mM.30m.05
Acetate.3mM.30m.06
Acetate.3mM.30m.07
Acetate.3mM.30m.08
Acetate.3mM.60m.03
Acetate.3mM.60m.04
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
MTB.in.Wild.type.macrophages.for.4hrs
MTB.in.Wild.type.macrophages.for.24hrs
MTB.in.Wild.type.macrophages...IFNg.for.4hrs
MTB.in.Wild.type.macrophages...IFNg.for.24hrs
MTB.in.Wild.type.macrophages...IFNg.for.48hrs
Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.2
X20ug.mL.Procept.6776vsDMSO..6h
X30ug.mLProcept6776vsDMSO.6h
X30ug.mLProcept6776vsDMSO.6hA
X5ug.mLProcept.6778vsDMSO.6h
X20ug.mL.Prcp.6778.DMSO..6h..1
X20ug.mL.Prcp.6778.DMSO..6h..2
X20ug.mLProcept6778vsDMSO.6h
X10ug.mL.PA.1vsDMSO..6h
X50ug.mL.PA.1vsDMSO..6h
X10ug.mL.PA.21vsDMSO..6h
X50ug.mL.PA.21vsDMSO..6h
X0.2ug.mL.PA824.DMSO..6h..1
X0.2ug.mL.PA824.DMSO..6h..2
X0.4ug.mL.PA824.DMSO..6h..3
X0.4ug.mL.PA824.DMSO..6h..4
X2ug.mL.PA824.DMSO..6h..2
X0.1mMGSNO.10ug.mLmdvsDMSO.6hA
X0.1mMGSNO.20ug.mLCPZvsDMSO.6hA
X25ug.mLCPZ.0.1mMGSNO.DMSO..3
X25ug.mLCPZ.0.1mMGSNOvsDMSO.A
X5ug.mL.CFZ.0.1mM.GSNO.DMSO..1
X5ug.mL.CFZ.0.1mM.GSNO.DMSO..2
X5ug.mLCFZ.0.1mMGSNOvsDMSO.A
X0.1mMGSNO.5ug.mLKCNvsDMSO.6h.A
X24ug.mL.Econazole.DMSO..6h..1
X12.5ug.mL.AntimycinvsDMSO..6h
X25ug.mL.AntimycinvsDMSO..6h
X50ug.mLAntimycinAvsDMSO..6h
X50ug.mLAntimycinAvsDMSO..6hB
X10ug.mL.clofazimine.DMSO..6h
X13ug.mL.clfzine.DMSO..6h..1
X10ug.mLchlorpromazinevsctrl.6h
X10ug.mLchlorpromazinevsctrl.6hA
X20ug.mL.CPZvsDMSO..6h.A
X25ug.mL.CPZvsDMSO..6h.A
X25ug.mL.CPZvsDMSO..6h.B
X24ug.mL.cltrmazole.DMS..6h..2
X50uM.CCCPvsDMSO..6h
X100uM.DCCD.DMSO..6h
X2mM.DTTvsDMSO..6h
X2mM.DTTvsDMSO..6h.A
X5ug.mL.KCN.DMSO..6h..2
X10ug.mL.menadionevsDMSO..6h
X10ug.mLmnd.Dubos.vsDMSO.6h
X10ug.mLmdn.0.1mMGSNO.DMSO..2
X50uM.NigericinvsDMSO..6h.A
X25ug.mL.TRZ.DMSO..6h
X50ug.mL.Thioridazine.DMSO..6h
X0.5uMValinomycinvsDMSO.6h
X1uM.ValinomycinvsDMSO..6h
X1uM.ValinomycinvsDMSO..6h.A
X1uM.ValinomycinvsDMSO..6h.B
X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.1
X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.1
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.2.x
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.3
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.4
X2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.1
CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.2
CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.2
CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.2
CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.1
CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.2
CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.1
CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.2
CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.2
MTB.at.T0..biological.rep1
MTB.at.T0..biological.rep2
MTB.at.T0..biological.rep3
MTB.at.T0..biological.rep4
MTB.at.T30..biological.rep2
MTB.at.T30..biological.rep3
MTB.at.T60..biological.rep2
MTB.at.T180..biological.rep1
MTB.at.T180..biological.rep2
MTB.at.T180..biological.rep3
MTB.at.T180..biological.rep4
MTB.at.T360..biological.rep1
MTB.at.T360..biological.rep2
MTB.at.T360..biological.rep3
MTB.at.T360..biological.rep4

Column members cluster 552f06a3b744335b89d44873 Species (TODO)

Whole.Lung.Surfactant.30min.rep.3
Extracted.Lung.Surfactant.2hrs.rep.1
Extracted.Lung.Surfactant.30min.rep.2
Extracted.Lung.Surfactant.30min.rep.4
Purified.Surfactant.Lipids.2hrs.rep.1
Purified.Human.SP.A.Coated.2hrs.rep1
Purified.Human.SP.A.Uncoated.2hrs.rep1
Purified.Human.SP.A.Uncoated.2hrs.rep2
Purified.Human.SP.A.Uncoated.2hrs.rep4
X20ug.ml.KCN.vs.DMSO.6hrs.x
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
aceatate.induction.2
Acetate.3mM.10m.03
Acetate.3mM.10m.05
Acetate.3mM.10m_04
Acetate.3mM.2h.02
Acetate.3mM.2h.04
Acetate.3mM.2h.06
Acetate.3mM.30m.01
Acetate.3mM.30m.02
Acetate.3mM.30m.03
Acetate.3mM.30m.05
Acetate.3mM.30m.06
Acetate.3mM.30m.07
Acetate.3mM.30m.08
Acetate.3mM.60m.03
Acetate.3mM.60m.04
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
MTB.in.Wild.type.macrophages.for.4hrs
MTB.in.Wild.type.macrophages.for.24hrs
MTB.in.Wild.type.macrophages...IFNg.for.4hrs
MTB.in.Wild.type.macrophages...IFNg.for.24hrs
MTB.in.Wild.type.macrophages...IFNg.for.48hrs
Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.2
X20ug.mL.Procept.6776vsDMSO..6h
X30ug.mLProcept6776vsDMSO.6h
X30ug.mLProcept6776vsDMSO.6hA
X5ug.mLProcept.6778vsDMSO.6h
X20ug.mL.Prcp.6778.DMSO..6h..1
X20ug.mL.Prcp.6778.DMSO..6h..2
X20ug.mLProcept6778vsDMSO.6h
X10ug.mL.PA.1vsDMSO..6h
X50ug.mL.PA.1vsDMSO..6h
X10ug.mL.PA.21vsDMSO..6h
X50ug.mL.PA.21vsDMSO..6h
X0.2ug.mL.PA824.DMSO..6h..1
X0.2ug.mL.PA824.DMSO..6h..2
X0.4ug.mL.PA824.DMSO..6h..3
X0.4ug.mL.PA824.DMSO..6h..4
X2ug.mL.PA824.DMSO..6h..2
X0.1mMGSNO.10ug.mLmdvsDMSO.6hA
X0.1mMGSNO.20ug.mLCPZvsDMSO.6hA
X25ug.mLCPZ.0.1mMGSNO.DMSO..3
X25ug.mLCPZ.0.1mMGSNOvsDMSO.A
X5ug.mL.CFZ.0.1mM.GSNO.DMSO..1
X5ug.mL.CFZ.0.1mM.GSNO.DMSO..2
X5ug.mLCFZ.0.1mMGSNOvsDMSO.A
X0.1mMGSNO.5ug.mLKCNvsDMSO.6h.A
X24ug.mL.Econazole.DMSO..6h..1
X12.5ug.mL.AntimycinvsDMSO..6h
X25ug.mL.AntimycinvsDMSO..6h
X50ug.mLAntimycinAvsDMSO..6h
X50ug.mLAntimycinAvsDMSO..6hB
X10ug.mL.clofazimine.DMSO..6h
X13ug.mL.clfzine.DMSO..6h..1
X10ug.mLchlorpromazinevsctrl.6h
X10ug.mLchlorpromazinevsctrl.6hA
X20ug.mL.CPZvsDMSO..6h.A
X25ug.mL.CPZvsDMSO..6h.A
X25ug.mL.CPZvsDMSO..6h.B
X24ug.mL.cltrmazole.DMS..6h..2
X50uM.CCCPvsDMSO..6h
X100uM.DCCD.DMSO..6h
X2mM.DTTvsDMSO..6h
X2mM.DTTvsDMSO..6h.A
X5ug.mL.KCN.DMSO..6h..2
X10ug.mL.menadionevsDMSO..6h
X10ug.mLmnd.Dubos.vsDMSO.6h
X10ug.mLmdn.0.1mMGSNO.DMSO..2
X50uM.NigericinvsDMSO..6h.A
X25ug.mL.TRZ.DMSO..6h
X50ug.mL.Thioridazine.DMSO..6h
X0.5uMValinomycinvsDMSO.6h
X1uM.ValinomycinvsDMSO..6h
X1uM.ValinomycinvsDMSO..6h.A
X1uM.ValinomycinvsDMSO..6h.B
X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.1
X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.1
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.2.x
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.3
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.4
X2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.1
CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.2
CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.2
CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.2
CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.1
CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.2
CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.1
CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.2
CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.2
MTB.at.T0..biological.rep1
MTB.at.T0..biological.rep2
MTB.at.T0..biological.rep3
MTB.at.T0..biological.rep4
MTB.at.T30..biological.rep2
MTB.at.T30..biological.rep3
MTB.at.T60..biological.rep2
MTB.at.T180..biological.rep1
MTB.at.T180..biological.rep2
MTB.at.T180..biological.rep3
MTB.at.T180..biological.rep4
MTB.at.T360..biological.rep1
MTB.at.T360..biological.rep2
MTB.at.T360..biological.rep3
MTB.at.T360..biological.rep4