Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16357193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16647197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.25487718072get_template_part( ).../page.php:28
60.25487718648locate_template( ).../general-template.php:206
70.25487718776load_template( ).../template.php:720
80.25497719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.25597736264the_content( ).../content-page.php:22
100.25627736512apply_filters( ).../post-template.php:256
110.25627736912WP_Hook->apply_filters( ).../plugin.php:205
120.25797742440do_shortcode( ).../class-wp-hook.php:310
130.25807748496preg_replace_callback ( ).../shortcodes.php:273
140.25807749120do_shortcode_tag( ).../shortcodes.php:273
150.25807749120bicluster_info_shortcode( ).../shortcodes.php:433
160.25817749320file_get_contents ( ).../short_codes.php:666
( ! ) Notice: Trying to get property 'bicluster' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 667
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16357193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16647197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.25487718072get_template_part( ).../page.php:28
60.25487718648locate_template( ).../general-template.php:206
70.25487718776load_template( ).../template.php:720
80.25497719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.25597736264the_content( ).../content-page.php:22
100.25627736512apply_filters( ).../post-template.php:256
110.25627736912WP_Hook->apply_filters( ).../plugin.php:205
120.25797742440do_shortcode( ).../class-wp-hook.php:310
130.25807748496preg_replace_callback ( ).../shortcodes.php:273
140.25807749120do_shortcode_tag( ).../shortcodes.php:273
150.25807749120bicluster_info_shortcode( ).../shortcodes.php:433
( ! ) Notice: Trying to get property 'id' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 669
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16357193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16647197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.25487718072get_template_part( ).../page.php:28
60.25487718648locate_template( ).../general-template.php:206
70.25487718776load_template( ).../template.php:720
80.25497719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.25597736264the_content( ).../content-page.php:22
100.25627736512apply_filters( ).../post-template.php:256
110.25627736912WP_Hook->apply_filters( ).../plugin.php:205
120.25797742440do_shortcode( ).../class-wp-hook.php:310
130.25807748496preg_replace_callback ( ).../shortcodes.php:273
140.25807749120do_shortcode_tag( ).../shortcodes.php:273
150.25807749120bicluster_info_shortcode( ).../shortcodes.php:433
( ! ) Notice: Trying to get property 'num_conditions' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 670
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16357193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16647197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.25487718072get_template_part( ).../page.php:28
60.25487718648locate_template( ).../general-template.php:206
70.25487718776load_template( ).../template.php:720
80.25497719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.25597736264the_content( ).../content-page.php:22
100.25627736512apply_filters( ).../post-template.php:256
110.25627736912WP_Hook->apply_filters( ).../plugin.php:205
120.25797742440do_shortcode( ).../class-wp-hook.php:310
130.25807748496preg_replace_callback ( ).../shortcodes.php:273
140.25807749120do_shortcode_tag( ).../shortcodes.php:273
150.25807749120bicluster_info_shortcode( ).../shortcodes.php:433
( ! ) Notice: Trying to get property 'num_genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 671
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16357193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16647197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.25487718072get_template_part( ).../page.php:28
60.25487718648locate_template( ).../general-template.php:206
70.25487718776load_template( ).../template.php:720
80.25497719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.25597736264the_content( ).../content-page.php:22
100.25627736512apply_filters( ).../post-template.php:256
110.25627736912WP_Hook->apply_filters( ).../plugin.php:205
120.25797742440do_shortcode( ).../class-wp-hook.php:310
130.25807748496preg_replace_callback ( ).../shortcodes.php:273
140.25807749120do_shortcode_tag( ).../shortcodes.php:273
150.25807749120bicluster_info_shortcode( ).../shortcodes.php:433
( ! ) Notice: Trying to get property 'residual' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 672
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16357193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16647197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.25487718072get_template_part( ).../page.php:28
60.25487718648locate_template( ).../general-template.php:206
70.25487718776load_template( ).../template.php:720
80.25497719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.25597736264the_content( ).../content-page.php:22
100.25627736512apply_filters( ).../post-template.php:256
110.25627736912WP_Hook->apply_filters( ).../plugin.php:205
120.25797742440do_shortcode( ).../class-wp-hook.php:310
130.25807748496preg_replace_callback ( ).../shortcodes.php:273
140.25807749120do_shortcode_tag( ).../shortcodes.php:273
150.25807749120bicluster_info_shortcode( ).../shortcodes.php:433
ID:
# Conditions:
# Genes:
Residual:

Bicluster Motifs

Bicluster Genes

  • Rv0111
  • Rv0593
  • Rv0856
  • Rv1017c
  • Rv1076
  • Rv1478
  • Rv1543
  • Rv1625c
  • Rv1634
  • Rv1668c
  • Rv1916
  • Rv2046
  • Rv2187
  • Rv2207
  • Rv2349c
  • Rv2351c
  • Rv2361c
  • Rv2473
  • Rv2483c
  • Rv2484c
  • Rv2759c
  • Rv3561
  • Rv3701c

Bicluster Conditions

  • H37Rv..7H9.roll.replicate.1.x
  • H37Rv..7H9.roll.replicate.2.x
  • H37Rv..7H9.roll.replicate.3.x
  • H37Rv..7H9.roll.replicate.4.x
  • H37Rv..7H9.shake.replicate.1
  • H37Rv..7H9.shake.replicate.2
  • H37Rv..Dubos.media.replicate.2
  • H37Rv..Dubos.media.replicate.3
  • H37Rv..Dubos.media.replicate.4
  • H37Rv..Sauton.s.media.replicate.1
  • H37Rv..Sauton.s.media.replicate.2
  • H37Rv..Sauton.s.media.replicate.4
  • H37Rv..Youman.media.replicate.1
  • H37Rv..Youman.media.replicate.2
  • H37Rv..Youman.media.replicate.3
  • H37Rv..7H9.roll.replicate.2.y
  • H37Rv..7H9.roll.replicate.4.y
  • MTB.strain.1254.Ctrl.vs.high.aeration.rep3
  • MTB1254.vs..MTB1254.rep3
  • MTB1254.vs..MTB1254.rep6
  • H37Rv.Day6.1
  • H37Rv.Day6.2
  • H37Rv.Day6.3
  • H37Rv.Day8.1
  • H37Rv.Day8.2
  • H37Rv.Day8.3
  • H37Rv.Day24.3
  • H37Rv.Day60.1
  • H37Rv.Day60.2
  • H37Rv.Day60.3
  • WT.t.6h.WT.t.0h..2
  • pH4.8vspH6.8..2h.
  • pH4.8vspH6.8..2h.A
  • pH4.8vspH6.8..4h.
  • pH4.8vspH6.8..4h.A
  • pH4.8vspH6.8..4h.B
  • pH4.8vspH6.8..4h.C
  • pH4.8vspH6.8..5h.
  • pH4.8vspH6.8..5.5h.
  • pH4.8vspH6.8..7h.
  • pH5.2vspH6.8..2h.
  • pH5.2vspH6.8..5h.
  • pH5.2vspH6.8..5.5h.
  • pH5.6vspH6.8..2h.
  • pH5.6vspH6.8..2h.A
  • pH5.6vspH6.8..4h.
  • pH5.6vspH6.8..4h.B
  • pH5.6vspH6.8..5h.
  • pH5.6vspH6.8..7h.
  • X0.2ug.mL.Mtmvsctrl..0.75h..x
  • X0.2ug.mL.Mtmvsctrl..2h..x
  • X0.2ug.mL.Mtmvsctrl..2h.B.x
  • X0.2ug.mL.Mtmvsctrl..2h.C.x
  • X0.2ug.mL.Mtmvsctrl..4h..x
  • X0.2ug.mL.Mtmvsctrl..4h.A.x
  • X0.2ug.mL.Mtmvsctrl..4h.B.x
  • X0.2ug.mL.Mtm.ctrl..4h...1.x
  • X0.2ug.mL.Mtm.ctrl..4h...2.x
  • X0.2ug.mL.Mtmvsctrl..6h..x
  • AA_10uM_10.min_01
  • AA_10uM_10min_01
  • AA_30uM_10.min_05
  • AA_30uM_10.min_06
  • AA_30uM_10.min_07
  • AA_30uM_10min_02
  • AA_30uM_1h_01
  • AA_30uM_1h_08
  • AA_30uM_24h_02
  • AA_30uM_24h_03
  • AA_30uM_24h_04
  • AA_30uM_2h_02
  • AA_30uM_2h_03
  • AA_30uM_2h_09
  • AA_30uM_30min_01
  • AA_30uM_30min_02
  • AA_30uM_30min_03
  • AA_30uM_30min_04
  • AA_30uM_30min_06
  • AA_30uM_30min_07
  • AA_30uM_30min_08
  • AA_30uM_4h_02
  • AA_30uM_4h_05
  • AA_30uM_4h_07
  • AA_30uM_4h_09
  • AA_3uM_10.min_01
  • AA_60uM_24h_01
  • AA_60uM_24h_02
  • AA_60uM_24h_03
  • L2A_30uM_10min_04
  • L2A_30uM_10min_05
  • L2A_30uM_10min_07
  • L2A_30uM_1h_01
  • L2A_30uM_1h_02
  • L2A_30uM_1h_03
  • L2A_30uM_1h_06
  • L2A_30uM_1h_09
  • L2A_30uM_2h_01
  • L2A_30uM_2h_02
  • L2A_30uM_2h_03
  • L2A_30uM_2h_04
  • L2A_30uM_30min_01
  • L2A_30uM_30min_02
  • L2A_30uM_4h_03
  • L2A_30uM_4h_04
  • L2A_30uM_4h_06
  • L2A_30uM_4h_07
  • L2A_30uM_4h_08
  • LAA_50uM_10min_01
  • OA_50uM_10min_01
  • OA_50uM_10min_02
  • OA_50uM_10min_04
  • OA_50uM_10min_06
  • OA_50uM_10min_08
  • OA_50uM_1h_01
  • OA_50uM_1h_04
  • OA_50uM_1h_07
  • OA_50uM_1h_08
  • OA_50uM_1h_10
  • OA_50uM_24h_01
  • OA_50uM_24h_02
  • OA_50uM_24h_03
  • OA_50uM_24h_04
  • OA_50uM_24h_05
  • OA_50uM_24h_06
  • OA_50uM_2h_02
  • OA_50uM_2h_03
  • OA_50uM_2h_04
  • OA_50uM_2h_06
  • OA_50uM_2h_08
  • OA_50uM_2h_09
  • OA_50uM_2h_10
  • OA_50uM_30min_01
  • OA_50uM_30min_03
  • OA_50uM_30min_04
  • OA_50uM_30min_07
  • OA_50uM_30min_08
  • OA_50uM_4h_04
  • OA_50uM_4h_06
  • OA_50uM_4h_07
  • PA_100uM_24h_01
  • PA_100uM_2h_03
  • PA_100uM_2h_04
  • PA_10uM_10min_02
  • PA_50uM_10.min_02
  • PA_50uM_10.min_03
  • PA_50uM_10min_01
  • PA_50uM_10min_05
  • PA_50uM_10min_06
  • PA_50uM_10min_07
  • PA_50uM_10min_10
  • PA_50uM_12h_02
  • PA_50uM_12h_04
  • PA_50uM_1h_01
  • PA_50uM_1h_04
  • PA_50uM_1h_05
  • PA_50uM_1h_07
  • PA_50uM_1h_12
  • PA_50uM_24h_02
  • PA_50uM_2h_01
  • PA_50uM_2h_06
  • PA_50uM_30.min_04
  • PA_50uM_30.min_05
  • PA_50uM_30.min_06
  • PA_50uM_30min_02
  • PA_50uM_30min_10
  • PA_50uM_3d_01
  • PA_50uM_3d_02
  • PA_50uM_3d_03
  • PA_50uM_3d_04
  • PA_50uM_3d_05
  • PA_50uM_3d_06
  • PA_50uM_4h
  • PA_50uM_4h_01
  • PA_50uM_8h_02
  • PA_50uM_8h_04
  • CDC1551.Ctrl.vs.H37Rv.rep.1
  • CDC1551.Ctrl.vs.H37Rv.rep.2
  • CDC1551.Ctrl.vs.H37Rv.rep.3
  • H37Rv.reaeration.for.4hrs.rep.4
  • H37Rv.reaeration.for.4hrs.rep.5
  • H37Rv.reaeration.for.4hrs.rep.6
  • H37Rv.reaeration.for.4hrs.rep.7
  • H37Rv.reaeration.for.6hrs.rep.2
  • H37Rv.reaeration.for.6hrs.rep.3
  • H37Rv.reaeration.for.12hrs.rep.1
  • H37Rv.reaeration.for.12hrs.rep.2
  • H37Rv.reaeration.for.12hrs.rep.5
  • H37Rv.reaeration.for.24hrs.rep.1
  • H37Rv.reaeration.for.24hrs.rep.2
  • H37Rv.reaeration.for.24hrs.rep.4
  • H37Rv.reaeration.for.24hrs.rep.5
  • Mtb.response.to.pH.5.5..6.replicates.
  • Mtb.response.to.pH.6.5..6.replicates.
  • SS_A1_RV.1
  • SS_A1_RV.3
  • wild.type..mc.2.6020...biological.rep1
  • wild.type..mc.2.6020...biological.rep2
  • X40ug.mL.5CL.pH5.6..4h..2
  • X0.12mg.mL.BZA.pH5.6..4h..1
  • X0.12mg.mL.BZAvspH5.6..5h.
  • X0.12mg.mL.BZAvspH5.6..7h.
  • X1.2mg.mL.NamvspH5.6..5h.
  • X0.12mg.mL.PZA.pH5.6..2.5h.
  • X0.12mg.mL.PZA.pH5.6..4h..1
  • X0.12mg.mL.PZA.pH5.6..5h.
  • X1.2mg.mL.PZAvspH5.6..4h.
  • X1.2mg.mL.PZAvspH5.6..4h.A
  • X1.2mg.mL.PZAvspH5.6..4h.B
  • X1.2mg.mL.PZA.pH5.6..5h.
  • X1.2mg.mL.PZAvspH5.6..6h.A
  • X1.2mg.mL.PZAvspH5.6..7h.A
  • X1.2mg.mL.PZAvspH5.6..10.5h.
  • X0.1ug.mL.Mtmvsctrl..0.75h..y
  • X0.2ug.mL.Mtmvsctrl..2h..y
  • X0.2ug.mL.Mtmvsctrl..2h.B.y
  • X0.2ug.mL.Mtmvsctrl..4h..y
  • X0.2ug.mL.Mtmvsctrl..4h.A.y
  • X0.2ug.mL.Mtm.ctrl..4h...1.y
  • X0.2ug.mL.Mtm.ctrl..4h...2.y
  • X0.2ug.mL.Mtmvsctrl..6h..y
  • X10ug.mL.LevovsEtOH..6hA
  • X10ug.mL.Nvb.DMSO..6h..2
  • X10ug.mL.Nvb.DMSO..6h..3
  • X5ug.mL.OfloxvsEtOH..6h
  • X5ug.mL.OfloxvsEtOH..6hA
  • Rif.0.5ug.mL.vsDMSO.2.5h
  • Rif.0.5ug.mL.vsDMSO.2.5hA
  • Rif.5ug.mL.vsDMSO.2.5h
  • X0.1ug.mL.RifpvsEtOH..6hA
  • X0.5ug.mLRifapentinevsEtOH.6h