Bicluster – MTB EGRIN 2.0

( ! ) Warning: file_get_contents(https://mtb-egrin2.systemsbiology.net/api/api/v1.0.0/bicluster_info/552f1505b744335b89d4a7a6): failed to open stream: HTTP request failed! HTTP/1.1 500 Internal Server Error in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 666
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398656	{main}( )	.../index.php:0
2	0.0001	398936	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1637	7193568	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1670	7197312	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2491	7718072	get_template_part( )	.../page.php:28
6	0.2492	7718648	locate_template( )	.../general-template.php:206
7	0.2492	7718776	load_template( )	.../template.php:720
8	0.2493	7719088	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2501	7736264	the_content( )	.../content-page.php:22
10	0.2504	7736512	apply_filters( )	.../post-template.php:256
11	0.2504	7736912	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2519	7742440	do_shortcode( )	.../class-wp-hook.php:310
13	0.2520	7748496	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2520	7749120	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2520	7749120	bicluster_info_shortcode( )	.../shortcodes.php:433
16	0.2521	7749320	file_get_contents ( )	.../short_codes.php:666

( ! ) Notice: Trying to get property 'bicluster' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 667
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398656	{main}( )	.../index.php:0
2	0.0001	398936	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1637	7193568	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1670	7197312	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2491	7718072	get_template_part( )	.../page.php:28
6	0.2492	7718648	locate_template( )	.../general-template.php:206
7	0.2492	7718776	load_template( )	.../template.php:720
8	0.2493	7719088	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2501	7736264	the_content( )	.../content-page.php:22
10	0.2504	7736512	apply_filters( )	.../post-template.php:256
11	0.2504	7736912	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2519	7742440	do_shortcode( )	.../class-wp-hook.php:310
13	0.2520	7748496	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2520	7749120	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2520	7749120	bicluster_info_shortcode( )	.../shortcodes.php:433

( ! ) Notice: Trying to get property 'id' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 669
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398656	{main}( )	.../index.php:0
2	0.0001	398936	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1637	7193568	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1670	7197312	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2491	7718072	get_template_part( )	.../page.php:28
6	0.2492	7718648	locate_template( )	.../general-template.php:206
7	0.2492	7718776	load_template( )	.../template.php:720
8	0.2493	7719088	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2501	7736264	the_content( )	.../content-page.php:22
10	0.2504	7736512	apply_filters( )	.../post-template.php:256
11	0.2504	7736912	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2519	7742440	do_shortcode( )	.../class-wp-hook.php:310
13	0.2520	7748496	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2520	7749120	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2520	7749120	bicluster_info_shortcode( )	.../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_conditions' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 670
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398656	{main}( )	.../index.php:0
2	0.0001	398936	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1637	7193568	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1670	7197312	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2491	7718072	get_template_part( )	.../page.php:28
6	0.2492	7718648	locate_template( )	.../general-template.php:206
7	0.2492	7718776	load_template( )	.../template.php:720
8	0.2493	7719088	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2501	7736264	the_content( )	.../content-page.php:22
10	0.2504	7736512	apply_filters( )	.../post-template.php:256
11	0.2504	7736912	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2519	7742440	do_shortcode( )	.../class-wp-hook.php:310
13	0.2520	7748496	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2520	7749120	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2520	7749120	bicluster_info_shortcode( )	.../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 671
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398656	{main}( )	.../index.php:0
2	0.0001	398936	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1637	7193568	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1670	7197312	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2491	7718072	get_template_part( )	.../page.php:28
6	0.2492	7718648	locate_template( )	.../general-template.php:206
7	0.2492	7718776	load_template( )	.../template.php:720
8	0.2493	7719088	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2501	7736264	the_content( )	.../content-page.php:22
10	0.2504	7736512	apply_filters( )	.../post-template.php:256
11	0.2504	7736912	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2519	7742440	do_shortcode( )	.../class-wp-hook.php:310
13	0.2520	7748496	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2520	7749120	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2520	7749120	bicluster_info_shortcode( )	.../shortcodes.php:433

( ! ) Notice: Trying to get property 'residual' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 672
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398656	{main}( )	.../index.php:0
2	0.0001	398936	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1637	7193568	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1670	7197312	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2491	7718072	get_template_part( )	.../page.php:28
6	0.2492	7718648	locate_template( )	.../general-template.php:206
7	0.2492	7718776	load_template( )	.../template.php:720
8	0.2493	7719088	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2501	7736264	the_content( )	.../content-page.php:22
10	0.2504	7736512	apply_filters( )	.../post-template.php:256
11	0.2504	7736912	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2519	7742440	do_shortcode( )	.../class-wp-hook.php:310
13	0.2520	7748496	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2520	7749120	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2520	7749120	bicluster_info_shortcode( )	.../shortcodes.php:433

ID:
# Conditions:
# Genes:
Residual:

Bicluster Motifs

Bicluster Genes

Rv0245
Rv0262c
Rv0278c
Rv0597c
Rv0958
Rv1061
Rv1067c
Rv1124
Rv1128c
Rv1148c
Rv1378c
Rv1496
Rv1865c
Rv1929c
Rv2318
Rv2319c
Rv2506
Rv2618
Rv2628
Rv2728c
Rv3000
Rv3074
Rv3266c
Rv3352c
Rv3370c
Rv3394c
Rv3555c

Bicluster Conditions

X1ug.mL..59vsDMSO..6hA
X10ug.mL..59vsDMSO..6h
X10ug.mL..59vsDMSO..6hA
X.109..1ug.mL..vs.DMSO..12h..replicate.1..GEO.ac.GSM28051.
X10ug.mL..241vsDMSO..6h
X.241..0.1ug.mL..DMSO..12h..1..GEO.acc.GSM28046.
X.241..10ug.mL..DMSO..12h..2
X0.2ug.mL..111891.DMSO..5.5h..1
X0.2ug.mL..111891.DMSO..5.5h..2
X1ug.mL..111891vsDMSO..6h
X1ug.mL..111891.DMSO..12h..1
X0.5ug.mL..111895vsDMSO..6h
X0.5ug.mL..111895vsDMSO.6h
X1ug.mL..111895vsDMSO..6h
X1ug.mL..111895vsDMSO..6hA
X2ug.mL..111895vsDMSO..6h
X2ug.mL..111895vsDMSO..6hB
X2ug.mL..121940vsDMSO..6h
X1ug.mL..121940.DMSO..12h
X1ug.mL..124196vsDMSO..6h
X1ug.mL..124196vsDMSO..6hA
DIPED.50ug.mL.vs.DMSO.12h.2
DIPED..100ug.mL..DMSO..12h..2
X0.1mg.mL.TriclosanvsEtOH..6h
X0.1mg.mL.TriclosanvsEtOH..6hA
X0.1mg.mLTriclosanvsEtOH.6hB
X0.1mg.mLTriclosanvsEtOH.6hC
X0.15mg.mL.TricvsEtOH..6h
X0.15mg.mL.TricvsEtOH..6hA
X10ug.mL.TriclosanvsDMSO..6hA
X10ug.mL.TriclosanvsDMSO..6hB
X10ug.mL.TriclosanvsDMSO..6hC
X50ug.mL.Triclosan.EtOH
X100ug.mL.TriclosanvsEtOH..6hA
EMB.10ug.mL.vs.DMSO.12h.1
EMB.10ug.mL.vs.DMSO.12h.3
X0.2mg.mL.AmpvsEtOH..6h
X0.2mg.mL.AmpvsEtOH..6hA
X0.2mg.mL.AmpvsEtOH..6hB
X0.2mg.mL.AmpvsEtOH..6hC
X0.32ug.mL.CervsEtOH..6hA
X0.5ug.mL.CervsEtOH..6h
X0.5ug.mL.CervsEtOH..6hA
X0.5ug.mL.CeruleninvsDMSO..6hA
X0.5ug.mL.CeruleninvsDMSO..6hB
X20ug.mL.Cephalexin.Ctrl..6h..1
X20ug.mL.Cephalexin.Ctrl..6h..2
X100ug.mL.Cephalexin.Ctrl..6h
X100ug.mL.Ceph.DMSO..6h
X100ug.mL.Cphx.DMSO..6h
X100ug.mLCephalexinvsEtOH.6hA
X100uM.Dipyridylvsctrl..6h
X150uM.Deferroxaminevsctrl..6hA
X150uM.Deferroxaminevsctrl..6hB
X12ug.mLEthionamidevsEtOH.6hA
X40ug.mL.EtavsEtOH..6hA
X0.2ug.mL.INH.EtOH..6h
X9ug.mLAscidideminNpvsDMSO.6h
X9ug.mLAscidideminNpvsDMSO.6hA
X0.13mg.mL.TLMvsDMSO..6h
X0.13mg.mL.TLMvsDMSO..6hA
X0.2mg.mL.TLMvsEtOH..6h
X0.2mg.mL.TLMvsEtOH..6hA
X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3.x
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.x
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.1
X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.2
X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.2
X130ug.ml.TLM.vs.DMSO.6hrs.rep.1
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.1
MTB1254.3524.2._INH_20MIN
X0.2mg.ml.Ampicillin.vs.Ethanol.6hrs
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.y
H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.1
H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.2
H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.1
H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.1
H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.2
H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.1
H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2

Column members cluster 552f1505b744335b89d4a7a6 Species (TODO)

X1ug.mL..59vsDMSO..6hA
X10ug.mL..59vsDMSO..6h
X10ug.mL..59vsDMSO..6hA
X.109..1ug.mL..vs.DMSO..12h..replicate.1..GEO.ac.GSM28051.
X10ug.mL..241vsDMSO..6h
X.241..0.1ug.mL..DMSO..12h..1..GEO.acc.GSM28046.
X.241..10ug.mL..DMSO..12h..2
X0.2ug.mL..111891.DMSO..5.5h..1
X0.2ug.mL..111891.DMSO..5.5h..2
X1ug.mL..111891vsDMSO..6h
X1ug.mL..111891.DMSO..12h..1
X0.5ug.mL..111895vsDMSO..6h
X0.5ug.mL..111895vsDMSO.6h
X1ug.mL..111895vsDMSO..6h
X1ug.mL..111895vsDMSO..6hA
X2ug.mL..111895vsDMSO..6h
X2ug.mL..111895vsDMSO..6hB
X2ug.mL..121940vsDMSO..6h
X1ug.mL..121940.DMSO..12h
X1ug.mL..124196vsDMSO..6h
X1ug.mL..124196vsDMSO..6hA
DIPED.50ug.mL.vs.DMSO.12h.2
DIPED..100ug.mL..DMSO..12h..2
X0.1mg.mL.TriclosanvsEtOH..6h
X0.1mg.mL.TriclosanvsEtOH..6hA
X0.1mg.mLTriclosanvsEtOH.6hB
X0.1mg.mLTriclosanvsEtOH.6hC
X0.15mg.mL.TricvsEtOH..6h
X0.15mg.mL.TricvsEtOH..6hA
X10ug.mL.TriclosanvsDMSO..6hA
X10ug.mL.TriclosanvsDMSO..6hB
X10ug.mL.TriclosanvsDMSO..6hC
X50ug.mL.Triclosan.EtOH
X100ug.mL.TriclosanvsEtOH..6hA
EMB.10ug.mL.vs.DMSO.12h.1
EMB.10ug.mL.vs.DMSO.12h.3
X0.2mg.mL.AmpvsEtOH..6h
X0.2mg.mL.AmpvsEtOH..6hA
X0.2mg.mL.AmpvsEtOH..6hB
X0.2mg.mL.AmpvsEtOH..6hC
X0.32ug.mL.CervsEtOH..6hA
X0.5ug.mL.CervsEtOH..6h
X0.5ug.mL.CervsEtOH..6hA
X0.5ug.mL.CeruleninvsDMSO..6hA
X0.5ug.mL.CeruleninvsDMSO..6hB
X20ug.mL.Cephalexin.Ctrl..6h..1
X20ug.mL.Cephalexin.Ctrl..6h..2
X100ug.mL.Cephalexin.Ctrl..6h
X100ug.mL.Ceph.DMSO..6h
X100ug.mL.Cphx.DMSO..6h
X100ug.mLCephalexinvsEtOH.6hA
X100uM.Dipyridylvsctrl..6h
X150uM.Deferroxaminevsctrl..6hA
X150uM.Deferroxaminevsctrl..6hB
X12ug.mLEthionamidevsEtOH.6hA
X40ug.mL.EtavsEtOH..6hA
X0.2ug.mL.INH.EtOH..6h
X9ug.mLAscidideminNpvsDMSO.6h
X9ug.mLAscidideminNpvsDMSO.6hA
X0.13mg.mL.TLMvsDMSO..6h
X0.13mg.mL.TLMvsDMSO..6hA
X0.2mg.mL.TLMvsEtOH..6h
X0.2mg.mL.TLMvsEtOH..6hA
X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3.x
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.x
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.1
X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.2
X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.2
X130ug.ml.TLM.vs.DMSO.6hrs.rep.1
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.1
MTB1254.3524.2._INH_20MIN
X0.2mg.ml.Ampicillin.vs.Ethanol.6hrs
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.y
H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.1
H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.2
H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.1
H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.1
H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.2
H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.1
H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2