Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17487193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17867197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27357718072get_template_part( ).../page.php:28
60.27357718648locate_template( ).../general-template.php:206
70.27357718776load_template( ).../template.php:720
80.27367719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27477736264the_content( ).../content-page.php:22
100.27497736512apply_filters( ).../post-template.php:256
110.27507736912WP_Hook->apply_filters( ).../plugin.php:205
120.27617742440do_shortcode( ).../class-wp-hook.php:310
130.27627748496preg_replace_callback ( ).../shortcodes.php:273
140.27627749120do_shortcode_tag( ).../shortcodes.php:273
150.27627749120bicluster_info_shortcode( ).../shortcodes.php:433
160.27637749320file_get_contents ( ).../short_codes.php:666

( ! ) Notice: Trying to get property 'bicluster' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 667
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17487193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17867197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27357718072get_template_part( ).../page.php:28
60.27357718648locate_template( ).../general-template.php:206
70.27357718776load_template( ).../template.php:720
80.27367719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27477736264the_content( ).../content-page.php:22
100.27497736512apply_filters( ).../post-template.php:256
110.27507736912WP_Hook->apply_filters( ).../plugin.php:205
120.27617742440do_shortcode( ).../class-wp-hook.php:310
130.27627748496preg_replace_callback ( ).../shortcodes.php:273
140.27627749120do_shortcode_tag( ).../shortcodes.php:273
150.27627749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'id' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 669
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17487193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17867197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27357718072get_template_part( ).../page.php:28
60.27357718648locate_template( ).../general-template.php:206
70.27357718776load_template( ).../template.php:720
80.27367719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27477736264the_content( ).../content-page.php:22
100.27497736512apply_filters( ).../post-template.php:256
110.27507736912WP_Hook->apply_filters( ).../plugin.php:205
120.27617742440do_shortcode( ).../class-wp-hook.php:310
130.27627748496preg_replace_callback ( ).../shortcodes.php:273
140.27627749120do_shortcode_tag( ).../shortcodes.php:273
150.27627749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_conditions' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 670
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17487193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17867197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27357718072get_template_part( ).../page.php:28
60.27357718648locate_template( ).../general-template.php:206
70.27357718776load_template( ).../template.php:720
80.27367719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27477736264the_content( ).../content-page.php:22
100.27497736512apply_filters( ).../post-template.php:256
110.27507736912WP_Hook->apply_filters( ).../plugin.php:205
120.27617742440do_shortcode( ).../class-wp-hook.php:310
130.27627748496preg_replace_callback ( ).../shortcodes.php:273
140.27627749120do_shortcode_tag( ).../shortcodes.php:273
150.27627749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 671
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17487193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17867197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27357718072get_template_part( ).../page.php:28
60.27357718648locate_template( ).../general-template.php:206
70.27357718776load_template( ).../template.php:720
80.27367719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27477736264the_content( ).../content-page.php:22
100.27497736512apply_filters( ).../post-template.php:256
110.27507736912WP_Hook->apply_filters( ).../plugin.php:205
120.27617742440do_shortcode( ).../class-wp-hook.php:310
130.27627748496preg_replace_callback ( ).../shortcodes.php:273
140.27627749120do_shortcode_tag( ).../shortcodes.php:273
150.27627749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'residual' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 672
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17487193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17867197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27357718072get_template_part( ).../page.php:28
60.27357718648locate_template( ).../general-template.php:206
70.27357718776load_template( ).../template.php:720
80.27367719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27477736264the_content( ).../content-page.php:22
100.27497736512apply_filters( ).../post-template.php:256
110.27507736912WP_Hook->apply_filters( ).../plugin.php:205
120.27617742440do_shortcode( ).../class-wp-hook.php:310
130.27627748496preg_replace_callback ( ).../shortcodes.php:273
140.27627749120do_shortcode_tag( ).../shortcodes.php:273
150.27627749120bicluster_info_shortcode( ).../shortcodes.php:433

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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17487193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17867197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27357718072get_template_part( ).../page.php:28
60.27357718648locate_template( ).../general-template.php:206
70.27357718776load_template( ).../template.php:720
80.27367719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27477736264the_content( ).../content-page.php:22
100.27497736512apply_filters( ).../post-template.php:256
110.27507736912WP_Hook->apply_filters( ).../plugin.php:205
120.27617742440do_shortcode( ).../class-wp-hook.php:310
130.27627748496preg_replace_callback ( ).../shortcodes.php:273
142.14357758408do_shortcode_tag( ).../shortcodes.php:273
152.14357758880bicluster_genes_shortcode( ).../shortcodes.php:433
162.14367759384file_get_contents ( ).../short_codes.php:15

( ! ) Notice: Trying to get property 'genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 16
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17487193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17867197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27357718072get_template_part( ).../page.php:28
60.27357718648locate_template( ).../general-template.php:206
70.27357718776load_template( ).../template.php:720
80.27367719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27477736264the_content( ).../content-page.php:22
100.27497736512apply_filters( ).../post-template.php:256
110.27507736912WP_Hook->apply_filters( ).../plugin.php:205
120.27617742440do_shortcode( ).../class-wp-hook.php:310
130.27627748496preg_replace_callback ( ).../shortcodes.php:273
142.14357758408do_shortcode_tag( ).../shortcodes.php:273
152.14357758880bicluster_genes_shortcode( ).../shortcodes.php:433

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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17487193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17867197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27357718072get_template_part( ).../page.php:28
60.27357718648locate_template( ).../general-template.php:206
70.27357718776load_template( ).../template.php:720
80.27367719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27477736264the_content( ).../content-page.php:22
100.27497736512apply_filters( ).../post-template.php:256
110.27507736912WP_Hook->apply_filters( ).../plugin.php:205
120.27617742440do_shortcode( ).../class-wp-hook.php:310
130.27627748496preg_replace_callback ( ).../shortcodes.php:273
142.14357758408do_shortcode_tag( ).../shortcodes.php:273
152.14357758880bicluster_genes_shortcode( ).../shortcodes.php:433

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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17487193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17867197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27357718072get_template_part( ).../page.php:28
60.27357718648locate_template( ).../general-template.php:206
70.27357718776load_template( ).../template.php:720
80.27367719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27477736264the_content( ).../content-page.php:22
100.27497736512apply_filters( ).../post-template.php:256
110.27507736912WP_Hook->apply_filters( ).../plugin.php:205
120.27617742440do_shortcode( ).../class-wp-hook.php:310
130.27627748496preg_replace_callback ( ).../shortcodes.php:273
142.14357758408do_shortcode_tag( ).../shortcodes.php:273
152.14357758880bicluster_genes_shortcode( ).../shortcodes.php:433
ID:
# Conditions:
# Genes:
Residual:

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • Strain.CDC1551..replicate.1
    • Strain.CDC1551..replicate.2
    • Strain.CDC1551..replicate.3
    • Strain.CDC1551..replicate.4
    • Strain.1006...replicate.2
    • Strain.1006...replicate.3
    • Strain.1254...replicate.4
    • Strain.1254...replicate.1
    • Strain.1843..replicate.1
    • Strain.1843...replicate.3
    • Strain.3160..replicate.2
    • Strain.3160..replicate.4
    • Strain.9700665..replicate.3
    • Strain.9700665..replicate.4
    • Strain.9800608..replicate.1
    • Strain.9800608..replicate.2
    • Strain.9800608..replicate.4
    • Strain.9802501..replicate1
    • Strain.9802501..replicate.2
    • Strain.9802826..replicate.1
    • Strain.9802826..replicate.2
    • Strain.9802826..replicate.3
    • Strain.M3061a..replicate.1
    • Strain.M3061a..replicate.2
    • Strain.M3061a..replicate.3
    • Strain.M3061a..replicate.4
    • H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
    • H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
    • H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
    • Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
    • Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
    • Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
    • Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
    • Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
    • Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3
    • Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
    • Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
    • Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.4
    • Glucose_5mM_10min_01
    • CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.2
    • Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
    • H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
    • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
    • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.2
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.4
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.5
    • Mtb.Erdman.strain.20.ppm.CO.rep.1
    • Mtb.Erdman.strain.20.ppm.CO.rep.2
    • Mtb.Erdman.strain.2000.ppm.CO.rep.1
    • BCG.2hr.phagosomal.profile
    • M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
    • MTB.in.Wild.type.macrophages.for.4hrs
    • MTB.in.Wild.type.macrophages.for.24hrs
    • MTB.in.Wild.type.macrophages.for.48hrs
    • Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
    • Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
    • Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
    • hip.mutant.KL2801..biological.rep1
    • hip.mutant.KL2801..biological.rep2
    • hip.mutant.KL2825..biological.rep2
    • hip.mutant.HTS1090..biological.rep1
    • hip.mutant.HTS1105..biological.rep2
    • hip.mutant.HT1120..biological.rep2
    • hip.mutant.HT1134..biological.rep1
    • hip.mutant.HT1134..biological.rep2
    • hip.mutant.HT1137..biological.rep1