Bicluster – MTB EGRIN 2.0

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Call Stack
#	Time	Memory	Function	Location
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14	1.0667	7750992	do_shortcode_tag( )	.../shortcodes.php:273
15	1.0667	7750992	bicluster_motifs_shortcode( )	.../shortcodes.php:433
16	1.0668	7751120	file_get_contents ( )	.../short_codes.php:74

ID: 552f296bb744335b89d530e5
# Conditions: 120
# Genes: 17
Residual: 0.40849623439719

Bicluster Motifs

Bicluster Genes

Rv0047c
Rv1577c
Rv1894c
Rv1991c
Rv2499c
Rv2516c
Rv2517c
Rv2657c
Rv2777c
Rv3180c
Rv3182
Rv3188
Rv3429
Rv3503c
Rv3504
Rv3515c
Rv3537

Bicluster Conditions

H37Rv..7H9.roll.replicate.2.x
H37Rv..7H9.roll.replicate.3.x
H37Rv..7H9.roll.replicate.4.x
H37Rv..Dubos.media.replicate.1
H37Rv..Dubos.media.replicate.2
H37Rv..Dubos.media.replicate.3
H37Rv..Dubos.media.replicate.4
H37Rv..Sauton.s.media.replicate.2
H37Rv..Sauton.s.media.replicate.3
H37Rv..Youman.media.replicate.4
H37Rv..7H9.roll.replicate.2.y
H37Rv..7H9.roll.replicate.3.y
H37Rv.Day.0.rep.1
MTB1254.Day.0.rep.1
MTB1254.Day.0.rep.2
MTB1254.Day.0.rep.3
MTB1254.vs..MTB1254.rep3
MTB1254.vs..MTB1254.rep5
MTB1254.vs..MTB1254.rep6
H37Rv.Day.0.rep.2
H37Rv.Day.0.rep.3
H37Rv.Day8.2
H37Rv.Day14.1
H37Rv.Day14.3
H37Rv.Day24.3
H37Rv.Day60.3
WT.t.0h.WT.t.6h..1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
aceatate.induction.1
aceatate.induction.3
Acetate.3mM.10m.02
Acetate.3mM.10m.03
Acetate.3mM.10m.05
Acetate.3mM.10m.06
Acetate.3mM.10m.07
Acetate.3mM.10m_04
Acetate.3mM.2h.01
Acetate.3mM.2h.04
Acetate.3mM.2h.06
Acetate.3mM.30m.02
Acetate.3mM.30m.03
Acetate.3mM.30m.05
Acetate.3mM.30m.06
Acetate.3mM.30m.07
Acetate.3mM.30m.08
Acetate.3mM.60m.02
Acetate.3mM.60m.03
Acetate.3mM.60m.04
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
CDC1551.ctrl.vs.ctrl.at.0.hr.rep.2
Mtb.Erdman.strain.200.ppm.CO.rep.2
Mtb.Erdman.strain.2000.ppm.CO.rep.1
Mtb.Erdman.strain.2000.ppm.CO.rep.2
BCG.2hr.phagosomal.profile
BCG.24hr.phagosomal.profile
WT.TB.rep3
MTB.in.Wild.type.macrophages.for.48hrs
MTB.in.Wild.type.macrophages...IFNg.for.48hrs
Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
WT_140mM_NaCl_Rep1
wild.type..mc.2.6020...biological.rep2
X20ug.mL.Prcp.6776.DMSO..6h..1
X20ug.mL.Procept.6776vsDMSO..6h
X20ug.mL.Procept6776vsDMSO..6h
X20ug.mL.Prcp.6778.DMSO..6h..1
X20ug.mL.Prcp.6778.DMSO..6h..2
X20ug.mLProcept6778vsDMSO.6h
X20ug.mLProcept6778vsDMSO.6hA
X20ug.mLProcept6778vsDMSO.6hB
X10ug.mL.PA.1vsDMSO..6h
X10ug.mL.PA.1vsDMSO..6hA
X10ug.mL.PA.1vsDMSO..6hB
X50ug.mL.PA.1vsDMSO..6h
X10ug.mL.PA.21vsDMSO..6hA
X50ug.mL.PA.21vsDMSO..6h
X50ug.mL.PA.21vsDMSO..6hA
X0.2ug.mL.PA824.DMSO..6h..2
X0.4ug.mL.PA824.DMSO..6h..1
X0.4ug.mL.PA824.DMSO..6h..2
X25ug.mL.AntimycinvsDMSO..6h
X50ug.mLAntimycinAvsDMSO..6h
X50ug.mLAntimycinAvsDMSO..6hA
X50ug.mLAntimycinAvsDMSO..6hB
X1mM.DTNBvsDMSO..6h
X20ug.mL.methoxatinvsDMSO..6h
X2mMb.mercaptoethanolvsDMSO.6h
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.1
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.2.x
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.3
X2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.2.y
MTB.at.T0..biological.rep2
MTB.at.T30..biological.rep1
MTB.at.T30..biological.rep2
MTB.at.T30..biological.rep3
MTB.at.T60..biological.rep1
MTB.at.T180..biological.rep2
MTB.at.T360..biological.rep2

Column members cluster 552f296bb744335b89d530e5 Species (TODO)

H37Rv..7H9.roll.replicate.2.x
H37Rv..7H9.roll.replicate.3.x
H37Rv..7H9.roll.replicate.4.x
H37Rv..Dubos.media.replicate.1
H37Rv..Dubos.media.replicate.2
H37Rv..Dubos.media.replicate.3
H37Rv..Dubos.media.replicate.4
H37Rv..Sauton.s.media.replicate.2
H37Rv..Sauton.s.media.replicate.3
H37Rv..Youman.media.replicate.4
H37Rv..7H9.roll.replicate.2.y
H37Rv..7H9.roll.replicate.3.y
H37Rv.Day.0.rep.1
MTB1254.Day.0.rep.1
MTB1254.Day.0.rep.2
MTB1254.Day.0.rep.3
MTB1254.vs..MTB1254.rep3
MTB1254.vs..MTB1254.rep5
MTB1254.vs..MTB1254.rep6
H37Rv.Day.0.rep.2
H37Rv.Day.0.rep.3
H37Rv.Day8.2
H37Rv.Day14.1
H37Rv.Day14.3
H37Rv.Day24.3
H37Rv.Day60.3
WT.t.0h.WT.t.6h..1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
aceatate.induction.1
aceatate.induction.3
Acetate.3mM.10m.02
Acetate.3mM.10m.03
Acetate.3mM.10m.05
Acetate.3mM.10m.06
Acetate.3mM.10m.07
Acetate.3mM.10m_04
Acetate.3mM.2h.01
Acetate.3mM.2h.04
Acetate.3mM.2h.06
Acetate.3mM.30m.02
Acetate.3mM.30m.03
Acetate.3mM.30m.05
Acetate.3mM.30m.06
Acetate.3mM.30m.07
Acetate.3mM.30m.08
Acetate.3mM.60m.02
Acetate.3mM.60m.03
Acetate.3mM.60m.04
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
CDC1551.ctrl.vs.ctrl.at.0.hr.rep.2
Mtb.Erdman.strain.200.ppm.CO.rep.2
Mtb.Erdman.strain.2000.ppm.CO.rep.1
Mtb.Erdman.strain.2000.ppm.CO.rep.2
BCG.2hr.phagosomal.profile
BCG.24hr.phagosomal.profile
WT.TB.rep3
MTB.in.Wild.type.macrophages.for.48hrs
MTB.in.Wild.type.macrophages...IFNg.for.48hrs
Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
WT_140mM_NaCl_Rep1
wild.type..mc.2.6020...biological.rep2
X20ug.mL.Prcp.6776.DMSO..6h..1
X20ug.mL.Procept.6776vsDMSO..6h
X20ug.mL.Procept6776vsDMSO..6h
X20ug.mL.Prcp.6778.DMSO..6h..1
X20ug.mL.Prcp.6778.DMSO..6h..2
X20ug.mLProcept6778vsDMSO.6h
X20ug.mLProcept6778vsDMSO.6hA
X20ug.mLProcept6778vsDMSO.6hB
X10ug.mL.PA.1vsDMSO..6h
X10ug.mL.PA.1vsDMSO..6hA
X10ug.mL.PA.1vsDMSO..6hB
X50ug.mL.PA.1vsDMSO..6h
X10ug.mL.PA.21vsDMSO..6hA
X50ug.mL.PA.21vsDMSO..6h
X50ug.mL.PA.21vsDMSO..6hA
X0.2ug.mL.PA824.DMSO..6h..2
X0.4ug.mL.PA824.DMSO..6h..1
X0.4ug.mL.PA824.DMSO..6h..2
X25ug.mL.AntimycinvsDMSO..6h
X50ug.mLAntimycinAvsDMSO..6h
X50ug.mLAntimycinAvsDMSO..6hA
X50ug.mLAntimycinAvsDMSO..6hB
X1mM.DTNBvsDMSO..6h
X20ug.mL.methoxatinvsDMSO..6h
X2mMb.mercaptoethanolvsDMSO.6h
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.1
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.2.x
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.3
X2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.2.y
MTB.at.T0..biological.rep2
MTB.at.T30..biological.rep1
MTB.at.T30..biological.rep2
MTB.at.T30..biological.rep3
MTB.at.T60..biological.rep1
MTB.at.T180..biological.rep2
MTB.at.T360..biological.rep2