Bicluster


( ! ) Warning: file_get_contents(https://mtb-egrin2.systemsbiology.net/api/api/v1.0.0/bicluster_info/552f296bb744335b89d53136): failed to open stream: HTTP request failed! HTTP/1.1 500 Internal Server Error in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 666
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17267193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17697197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.26827718072get_template_part( ).../page.php:28
60.26827718648locate_template( ).../general-template.php:206
70.26827718776load_template( ).../template.php:720
80.26837719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.26967736264the_content( ).../content-page.php:22
100.26997736512apply_filters( ).../post-template.php:256
110.26997736912WP_Hook->apply_filters( ).../plugin.php:205
120.27157742440do_shortcode( ).../class-wp-hook.php:310
130.27177748496preg_replace_callback ( ).../shortcodes.php:273
140.27177749120do_shortcode_tag( ).../shortcodes.php:273
150.27177749120bicluster_info_shortcode( ).../shortcodes.php:433
160.27187749320file_get_contents ( ).../short_codes.php:666

( ! ) Notice: Trying to get property 'bicluster' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 667
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17267193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17697197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.26827718072get_template_part( ).../page.php:28
60.26827718648locate_template( ).../general-template.php:206
70.26827718776load_template( ).../template.php:720
80.26837719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.26967736264the_content( ).../content-page.php:22
100.26997736512apply_filters( ).../post-template.php:256
110.26997736912WP_Hook->apply_filters( ).../plugin.php:205
120.27157742440do_shortcode( ).../class-wp-hook.php:310
130.27177748496preg_replace_callback ( ).../shortcodes.php:273
140.27177749120do_shortcode_tag( ).../shortcodes.php:273
150.27177749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'id' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 669
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17267193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17697197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.26827718072get_template_part( ).../page.php:28
60.26827718648locate_template( ).../general-template.php:206
70.26827718776load_template( ).../template.php:720
80.26837719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.26967736264the_content( ).../content-page.php:22
100.26997736512apply_filters( ).../post-template.php:256
110.26997736912WP_Hook->apply_filters( ).../plugin.php:205
120.27157742440do_shortcode( ).../class-wp-hook.php:310
130.27177748496preg_replace_callback ( ).../shortcodes.php:273
140.27177749120do_shortcode_tag( ).../shortcodes.php:273
150.27177749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_conditions' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 670
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17267193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17697197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.26827718072get_template_part( ).../page.php:28
60.26827718648locate_template( ).../general-template.php:206
70.26827718776load_template( ).../template.php:720
80.26837719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.26967736264the_content( ).../content-page.php:22
100.26997736512apply_filters( ).../post-template.php:256
110.26997736912WP_Hook->apply_filters( ).../plugin.php:205
120.27157742440do_shortcode( ).../class-wp-hook.php:310
130.27177748496preg_replace_callback ( ).../shortcodes.php:273
140.27177749120do_shortcode_tag( ).../shortcodes.php:273
150.27177749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 671
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17267193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17697197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.26827718072get_template_part( ).../page.php:28
60.26827718648locate_template( ).../general-template.php:206
70.26827718776load_template( ).../template.php:720
80.26837719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.26967736264the_content( ).../content-page.php:22
100.26997736512apply_filters( ).../post-template.php:256
110.26997736912WP_Hook->apply_filters( ).../plugin.php:205
120.27157742440do_shortcode( ).../class-wp-hook.php:310
130.27177748496preg_replace_callback ( ).../shortcodes.php:273
140.27177749120do_shortcode_tag( ).../shortcodes.php:273
150.27177749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'residual' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 672
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17267193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17697197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.26827718072get_template_part( ).../page.php:28
60.26827718648locate_template( ).../general-template.php:206
70.26827718776load_template( ).../template.php:720
80.26837719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.26967736264the_content( ).../content-page.php:22
100.26997736512apply_filters( ).../post-template.php:256
110.26997736912WP_Hook->apply_filters( ).../plugin.php:205
120.27157742440do_shortcode( ).../class-wp-hook.php:310
130.27177748496preg_replace_callback ( ).../shortcodes.php:273
140.27177749120do_shortcode_tag( ).../shortcodes.php:273
150.27177749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Warning: file_get_contents(https://mtb-egrin2.systemsbiology.net/api/api/v1.0.0/bicluster_genes/552f296bb744335b89d53136): failed to open stream: HTTP request failed! HTTP/1.1 500 Internal Server Error in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 15
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17267193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17697197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.26827718072get_template_part( ).../page.php:28
60.26827718648locate_template( ).../general-template.php:206
70.26827718776load_template( ).../template.php:720
80.26837719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.26967736264the_content( ).../content-page.php:22
100.26997736512apply_filters( ).../post-template.php:256
110.26997736912WP_Hook->apply_filters( ).../plugin.php:205
120.27157742440do_shortcode( ).../class-wp-hook.php:310
130.27177748496preg_replace_callback ( ).../shortcodes.php:273
143.35967758408do_shortcode_tag( ).../shortcodes.php:273
153.35967758880bicluster_genes_shortcode( ).../shortcodes.php:433
163.35987759384file_get_contents ( ).../short_codes.php:15

( ! ) Notice: Trying to get property 'genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 16
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17267193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17697197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.26827718072get_template_part( ).../page.php:28
60.26827718648locate_template( ).../general-template.php:206
70.26827718776load_template( ).../template.php:720
80.26837719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.26967736264the_content( ).../content-page.php:22
100.26997736512apply_filters( ).../post-template.php:256
110.26997736912WP_Hook->apply_filters( ).../plugin.php:205
120.27157742440do_shortcode( ).../class-wp-hook.php:310
130.27177748496preg_replace_callback ( ).../shortcodes.php:273
143.35967758408do_shortcode_tag( ).../shortcodes.php:273
153.35967758880bicluster_genes_shortcode( ).../shortcodes.php:433

( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 18
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17267193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17697197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.26827718072get_template_part( ).../page.php:28
60.26827718648locate_template( ).../general-template.php:206
70.26827718776load_template( ).../template.php:720
80.26837719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.26967736264the_content( ).../content-page.php:22
100.26997736512apply_filters( ).../post-template.php:256
110.26997736912WP_Hook->apply_filters( ).../plugin.php:205
120.27157742440do_shortcode( ).../class-wp-hook.php:310
130.27177748496preg_replace_callback ( ).../shortcodes.php:273
143.35967758408do_shortcode_tag( ).../shortcodes.php:273
153.35967758880bicluster_genes_shortcode( ).../shortcodes.php:433

( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 29
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17267193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17697197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.26827718072get_template_part( ).../page.php:28
60.26827718648locate_template( ).../general-template.php:206
70.26827718776load_template( ).../template.php:720
80.26837719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.26967736264the_content( ).../content-page.php:22
100.26997736512apply_filters( ).../post-template.php:256
110.26997736912WP_Hook->apply_filters( ).../plugin.php:205
120.27157742440do_shortcode( ).../class-wp-hook.php:310
130.27177748496preg_replace_callback ( ).../shortcodes.php:273
143.35967758408do_shortcode_tag( ).../shortcodes.php:273
153.35967758880bicluster_genes_shortcode( ).../shortcodes.php:433
ID:
# Conditions:
# Genes:
Residual:

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • H37Rv..Dubos.media.replicate.3
    • H37Rv..Youman.media.replicate.2
    • H37Rv.Day.0.rep.1
    • MTB1254.Day.0.rep.1
    • MTB1254.vs..MTB1254.rep2
    • H37Rv.Day.0.rep.2
    • H37Rv.Day.0.rep.3
    • H37Rv.Day6.1
    • H37Rv.Day6.2
    • H37Rv.Day8.1
    • H37Rv.Day8.2
    • H37Rv.Day14.3
    • H37Rv.Day60.1
    • H37Rv.Day60.2
    • H37Rv.Day60.3
    • WT.t.6h.WT.t.0h..1
    • WT.t.6h.WT.t.0h..2
    • WT.t.0h.WT.t.6h..1
    • WT.t.0h.WT.t.6h..2
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
    • aceatate.induction.1
    • aceatate.induction.2
    • aceatate.induction.3
    • Acetate.3mM.10m.05
    • Acetate.3mM.10m_04
    • Acetate.3mM.2h.01
    • Acetate.3mM.2h.02
    • Acetate.3mM.2h.05
    • Acetate.3mM.30m.01
    • Acetate.3mM.60m.04
    • CDC1551.Ctrl.vs.H37Rv.rep.1
    • CDC1551.Ctrl.vs.H37Rv.rep.2
    • Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
    • H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
    • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
    • CDC1551.ctrl.vs.ctrl.at.0.hr.rep.1
    • CDC1551.ctrl.vs.ctrl.at.0.hr.rep.2
    • Mtb.Erdman.strain.20.ppm.CO.rep.2
    • Mtb.Erdman.strain.2000.ppm.CO.rep.2
    • BCG.24hr.phagosomal.profile
    • M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
    • WT.TB.rep3
    • MTB.in.Wild.type.macrophages.for.4hrs
    • MTB.in.Wild.type.macrophages...IFNg.for.4hrs
    • MTB.in.Wild.type.macrophages...IFNg.for.24hrs
    • MTB.in.Wild.type.macrophages...IFNg.for.48hrs
    • Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
    • Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
    • SS_A1_RV.2
    • WT_140mM_NaCl_Rep1
    • WT_140mM_NaCl_Rep2
    • WT_140mM_NaCl_Rep4
    • X20ug.mL.Procept.6776vsDMSO..6h
    • X20ug.mL.Procept6776vsDMSO..6h
    • X5ug.mLProcept.6778vsDMSO.6h
    • X5ug.mLProcept.6778vsDMSO.6hA
    • X20ug.mL.Prcp.6778.DMSO..6h..1
    • X20ug.mL.Prcp.6778.DMSO..6h..2
    • X20ug.mLProcept6778vsDMSO.6h
    • X20ug.mLProcept6778vsDMSO.6hB
    • X40ug.mLProcept6778vsDMSO.6h
    • X40ug.mLProcept6778vsDMSO.6hA
    • X10ug.mL.PA.1vsDMSO..6h
    • X10ug.mL.PA.1vsDMSO..6hA
    • X10ug.mL.PA.1vsDMSO..6hB
    • X10ug.mL.PA.21vsDMSO..6h
    • X10ug.mL.PA.21vsDMSO..6hA
    • X50ug.mL.PA.21vsDMSO..6h
    • X50ug.mL.PA.21vsDMSO..6hA
    • X0.2ug.mL.PA824.DMSO..6h..1
    • X0.2ug.mL.PA824.DMSO..6h..2
    • X0.4ug.mL.PA824.DMSO..6h..1
    • X0.4ug.mL.PA824.DMSO..6h..2
    • X2ug.mL.PA824.DMSO..6h..1
    • X12.5ug.mL.AntimycinvsDMSO..6h
    • X25ug.mL.AntimycinvsDMSO..6h
    • X50ug.mLAntimycinAvsDMSO..6h
    • X50ug.mLAntimycinAvsDMSO..6hA
    • X50ug.mLAntimycinAvsDMSO..6hB
    • X1mM.DTNBvsDMSO..6h
    • X2mM.DTNBvsDMSO
    • X10ug.mL.methoxatinvsDMSO..6h.A
    • X10ug.mLMethoxatinvsDMSO.6h
    • X20ug.mL.methoxatinvsDMSO..6h
    • X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.1
    • X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
    • X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.1
    • X2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
    • MTB.at.T30..biological.rep1
    • MTB.at.T30..biological.rep2
    • MTB.at.T30..biological.rep3
    • MTB.at.T60..biological.rep2
    • MTB.at.T180..biological.rep1
    • MTB.at.T180..biological.rep2
    • MTB.at.T180..biological.rep3
    • MTB.at.T180..biological.rep4
    • MTB.at.T360..biological.rep1
    • MTB.at.T360..biological.rep2
    • MTB.at.T360..biological.rep3