Bicluster – MTB EGRIN 2.0

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Call Stack
#	Time	Memory	Function	Location
1	0.0000	398656	{main}( )	.../index.php:0
2	0.0000	398936	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1810	7193568	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1839	7197312	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2892	7718072	get_template_part( )	.../page.php:28
6	0.2892	7718648	locate_template( )	.../general-template.php:206
7	0.2892	7718776	load_template( )	.../template.php:720
8	0.2893	7719088	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2901	7736264	the_content( )	.../content-page.php:22
10	0.2903	7736512	apply_filters( )	.../post-template.php:256
11	0.2903	7736912	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2913	7742440	do_shortcode( )	.../class-wp-hook.php:310
13	0.2914	7748496	preg_replace_callback ( )	.../shortcodes.php:273
14	3.0896	7749456	do_shortcode_tag( )	.../shortcodes.php:273
15	3.0896	7749456	bicluster_motifs_shortcode( )	.../shortcodes.php:433
16	3.0897	7749584	file_get_contents ( )	.../short_codes.php:74

ID: 552f2b54b744335b89d53c68
# Conditions: 129
# Genes: 8
Residual: 0.52216464689622

Bicluster Motifs

Bicluster Genes

Rv0208c
Rv0232
Rv0655
Rv0994
Rv1038c
Rv1772
Rv1782
Rv2525c

Bicluster Conditions

X4mM.H2O2vsctrl..1h.
X4mM.H2O2vsctrl..2h.
X4mM.H2O2vsctrl..2h.A
X4mM.H2O2.ctrl..2h...1
X4mM.H2O2.ctrl..2h...2
X4mM.H2O2.ctrl..4h...1
X4mM.H2O2.ctrl..4h...2
X4mM.H2O2vsctrl..4h.A
H2O2.4mM.vs.ctrl.8h.1
X20mJ.UVvsctrl..6h.
UV.20J.vs.ctrl.8h.1
X25J.UVvs.ctrl..6h.
X40mJ.UV.ctrl..6h.
UV.40J.vs.ctrl.8h.1
UV.40J.vs.ctrl.12h.1
UV.60J.vs.ctrl.6h.1
H37Rv.diamide.1h.rep.2
H37Rv.diamide.1h.rep.3
H37Rv.diamide.1h.rep.5
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.3
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6
X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.x
Mtb.Erdman.strain.200.ppm.CO.rep.1
Mtb.Erdman.strain.2000.ppm.CO.rep.2
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.1
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.2
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.1
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.2
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.3
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.5
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.6
A00470_Q3_t90_diamide
A00437_Q1_t30_diamide
A00436_Q2_t60_diamide
A00436_Q3_t90_diamide
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.4
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.4
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.2
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.2
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.3
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.5
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.4
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.5
X5ug.mL.CapvsEtOH..6h
X10ug.mL.RoxvsEtOH..6h
X30ug.mL.RoxvsEtOH..6h
X5ug.mLStreptomycinvsEtOH.6h
X5ug.mLStreptomycinvsEtOH.6hA
X5ug.mL.TetvsEtOH..6h
X5ug.ml.KCN.vs.DMSO.6hrs.rep.1.y
X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.y
Tet_100uM_30M_01
Tet_20uM_30M_01
X5ug.ml.Capreomycin.vs.Ethanol.6hrs.A
X5ug.ml.Streptomycin.vs.Ethanol.6hrs

Column members cluster 552f2b54b744335b89d53c68 Species (TODO)

X4mM.H2O2vsctrl..1h.
X4mM.H2O2vsctrl..2h.
X4mM.H2O2vsctrl..2h.A
X4mM.H2O2.ctrl..2h...1
X4mM.H2O2.ctrl..2h...2
X4mM.H2O2.ctrl..4h...1
X4mM.H2O2.ctrl..4h...2
X4mM.H2O2vsctrl..4h.A
H2O2.4mM.vs.ctrl.8h.1
X20mJ.UVvsctrl..6h.
UV.20J.vs.ctrl.8h.1
X25J.UVvs.ctrl..6h.
X40mJ.UV.ctrl..6h.
UV.40J.vs.ctrl.8h.1
UV.40J.vs.ctrl.12h.1
UV.60J.vs.ctrl.6h.1
H37Rv.diamide.1h.rep.2
H37Rv.diamide.1h.rep.3
H37Rv.diamide.1h.rep.5
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.3
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6
X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.x
Mtb.Erdman.strain.200.ppm.CO.rep.1
Mtb.Erdman.strain.2000.ppm.CO.rep.2
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.1
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.2
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.1
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.2
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.3
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.5
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.6
A00470_Q3_t90_diamide
A00437_Q1_t30_diamide
A00436_Q2_t60_diamide
A00436_Q3_t90_diamide
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.4
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.4
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.2
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.2
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.3
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.5
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.4
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.5
X5ug.mL.CapvsEtOH..6h
X10ug.mL.RoxvsEtOH..6h
X30ug.mL.RoxvsEtOH..6h
X5ug.mLStreptomycinvsEtOH.6h
X5ug.mLStreptomycinvsEtOH.6hA
X5ug.mL.TetvsEtOH..6h
X5ug.ml.KCN.vs.DMSO.6hrs.rep.1.y
X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.y
Tet_100uM_30M_01
Tet_20uM_30M_01
X5ug.ml.Capreomycin.vs.Ethanol.6hrs.A
X5ug.ml.Streptomycin.vs.Ethanol.6hrs