Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18467193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.18977197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27607718072get_template_part( ).../page.php:28
60.27607718648locate_template( ).../general-template.php:206
70.27607718776load_template( ).../template.php:720
80.27617719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27757736264the_content( ).../content-page.php:22
100.27787736512apply_filters( ).../post-template.php:256
110.27787736912WP_Hook->apply_filters( ).../plugin.php:205
120.27917742440do_shortcode( ).../class-wp-hook.php:310
130.27927748496preg_replace_callback ( ).../shortcodes.php:273
140.27927749120do_shortcode_tag( ).../shortcodes.php:273
150.27927749120bicluster_info_shortcode( ).../shortcodes.php:433
160.27937749320file_get_contents ( ).../short_codes.php:666

( ! ) Notice: Trying to get property 'bicluster' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 667
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18467193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.18977197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27607718072get_template_part( ).../page.php:28
60.27607718648locate_template( ).../general-template.php:206
70.27607718776load_template( ).../template.php:720
80.27617719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27757736264the_content( ).../content-page.php:22
100.27787736512apply_filters( ).../post-template.php:256
110.27787736912WP_Hook->apply_filters( ).../plugin.php:205
120.27917742440do_shortcode( ).../class-wp-hook.php:310
130.27927748496preg_replace_callback ( ).../shortcodes.php:273
140.27927749120do_shortcode_tag( ).../shortcodes.php:273
150.27927749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'id' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 669
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18467193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.18977197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27607718072get_template_part( ).../page.php:28
60.27607718648locate_template( ).../general-template.php:206
70.27607718776load_template( ).../template.php:720
80.27617719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27757736264the_content( ).../content-page.php:22
100.27787736512apply_filters( ).../post-template.php:256
110.27787736912WP_Hook->apply_filters( ).../plugin.php:205
120.27917742440do_shortcode( ).../class-wp-hook.php:310
130.27927748496preg_replace_callback ( ).../shortcodes.php:273
140.27927749120do_shortcode_tag( ).../shortcodes.php:273
150.27927749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_conditions' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 670
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18467193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.18977197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27607718072get_template_part( ).../page.php:28
60.27607718648locate_template( ).../general-template.php:206
70.27607718776load_template( ).../template.php:720
80.27617719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27757736264the_content( ).../content-page.php:22
100.27787736512apply_filters( ).../post-template.php:256
110.27787736912WP_Hook->apply_filters( ).../plugin.php:205
120.27917742440do_shortcode( ).../class-wp-hook.php:310
130.27927748496preg_replace_callback ( ).../shortcodes.php:273
140.27927749120do_shortcode_tag( ).../shortcodes.php:273
150.27927749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 671
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18467193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.18977197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27607718072get_template_part( ).../page.php:28
60.27607718648locate_template( ).../general-template.php:206
70.27607718776load_template( ).../template.php:720
80.27617719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27757736264the_content( ).../content-page.php:22
100.27787736512apply_filters( ).../post-template.php:256
110.27787736912WP_Hook->apply_filters( ).../plugin.php:205
120.27917742440do_shortcode( ).../class-wp-hook.php:310
130.27927748496preg_replace_callback ( ).../shortcodes.php:273
140.27927749120do_shortcode_tag( ).../shortcodes.php:273
150.27927749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'residual' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 672
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18467193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.18977197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27607718072get_template_part( ).../page.php:28
60.27607718648locate_template( ).../general-template.php:206
70.27607718776load_template( ).../template.php:720
80.27617719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27757736264the_content( ).../content-page.php:22
100.27787736512apply_filters( ).../post-template.php:256
110.27787736912WP_Hook->apply_filters( ).../plugin.php:205
120.27917742440do_shortcode( ).../class-wp-hook.php:310
130.27927748496preg_replace_callback ( ).../shortcodes.php:273
140.27927749120do_shortcode_tag( ).../shortcodes.php:273
150.27927749120bicluster_info_shortcode( ).../shortcodes.php:433
ID:
# Conditions:
# Genes:
Residual:

Bicluster Motifs

Bicluster Genes

  • Rv0303
  • Rv0458
  • Rv0557
  • Rv0584
  • Rv0968
  • Rv1562c
  • Rv2064
  • Rv2330c
  • Rv2640c
  • Rv2687c
  • Rv2826c
  • Rv2897c
  • Rv3057c
  • Rv3092c
  • Rv3415c
  • Rv3529c
  • Rv3853

Bicluster Conditions

  • H37Rv.0.05..SDS.exposure.for.1h.rep.2
  • H37Rv.0.05..SDS.exposure.for.1h.rep.3
  • H37Rv.0.05..SDS.exposure.for.1h.rep.6
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.1
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.2
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.3
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.1
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.1.x
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3.x
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.4.x
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.2
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.4
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.2
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.4
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.1
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.2
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.1
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.2
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.3
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.4
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.3
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.4
  • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.2.x
  • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.4.x
  • H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.1
  • H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3
  • H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4
  • CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.2
  • CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.3
  • CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.4
  • CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.5
  • H37Rv.vs..H37Rv.SDS.treated.rep.1
  • H37Rv.vs..H37Rv.SDS.treated.rep.4
  • H37Rv.vs..H37Rv.SDS.treated.rep.5
  • High.iron.wt.vs.low.iron.wt.1a
  • High.iron.wt.vs.low.iron.wt.2a
  • High.iron.wt.vs.low.iron.wt.2b
  • High.iron.wt.vs.low.iron.wt.3a
  • High.iron.wt.vs.low.iron.wt.3b
  • pH4.8vspH6.8..2h.A
  • pH4.8vspH6.8..2h.B
  • pH4.8vspH6.8..4h.
  • pH4.8vspH6.8..4h.B
  • pH4.8vspH6.8..4h.C
  • pH4.8vspH6.8..5.5h.
  • pH4.8vspH6.8..6h.
  • pH4.8vspH6.8..7h.
  • pH4.8vspH6.8..11h.
  • pH5.2vspH6.8..2h.
  • pH5.2vspH6.8..5.5h.
  • pH5.2vspH6.8..11h.
  • pH5.2vspH6.8..16h.
  • pH5.6vspH6.8..2h.
  • pH5.6vspH6.8..5h.
  • pH5.6vspH6.8..7h.
  • pH5.6vspH6.8..16h.
  • X0.1mM.GSNO.DMSO..3.5h
  • X0.1mM.GSNOvsDMSO..4h
  • X0.1mM.GSNOvsDMSO..6h.
  • X0.1mM.GSNOvsDMSO..6h.A
  • H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.4
  • H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.5
  • SDS_60min_01
  • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3.y
  • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.6.y
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.1.y
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3.y
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.6
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.7
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.4hrs.rep.1
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.4hrs.rep.2
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.4hrs.rep.3
  • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.4hrs.rep.4
  • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.1.y
  • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.2.y
  • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.4.y
  • MTB.strain1254.vs.MTB.strain.1254.for.DETA.NO.exp.control.rep.4