Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.13947193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.14287197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.23277718072get_template_part( ).../page.php:28
60.23277718648locate_template( ).../general-template.php:206
70.23277718776load_template( ).../template.php:720
80.23287719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.23427736264the_content( ).../content-page.php:22
100.23457736512apply_filters( ).../post-template.php:256
110.23467736912WP_Hook->apply_filters( ).../plugin.php:205
120.23637742440do_shortcode( ).../class-wp-hook.php:310
130.23657748496preg_replace_callback ( ).../shortcodes.php:273
144.08127757416do_shortcode_tag( ).../shortcodes.php:273
154.08127757888bicluster_genes_shortcode( ).../shortcodes.php:433
164.08137758392file_get_contents ( ).../short_codes.php:15
( ! ) Notice: Trying to get property 'genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 16
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.13947193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.14287197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.23277718072get_template_part( ).../page.php:28
60.23277718648locate_template( ).../general-template.php:206
70.23277718776load_template( ).../template.php:720
80.23287719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.23427736264the_content( ).../content-page.php:22
100.23457736512apply_filters( ).../post-template.php:256
110.23467736912WP_Hook->apply_filters( ).../plugin.php:205
120.23637742440do_shortcode( ).../class-wp-hook.php:310
130.23657748496preg_replace_callback ( ).../shortcodes.php:273
144.08127757416do_shortcode_tag( ).../shortcodes.php:273
154.08127757888bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 18
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.13947193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.14287197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.23277718072get_template_part( ).../page.php:28
60.23277718648locate_template( ).../general-template.php:206
70.23277718776load_template( ).../template.php:720
80.23287719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.23427736264the_content( ).../content-page.php:22
100.23457736512apply_filters( ).../post-template.php:256
110.23467736912WP_Hook->apply_filters( ).../plugin.php:205
120.23637742440do_shortcode( ).../class-wp-hook.php:310
130.23657748496preg_replace_callback ( ).../shortcodes.php:273
144.08127757416do_shortcode_tag( ).../shortcodes.php:273
154.08127757888bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 29
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.13947193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.14287197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.23277718072get_template_part( ).../page.php:28
60.23277718648locate_template( ).../general-template.php:206
70.23277718776load_template( ).../template.php:720
80.23287719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.23427736264the_content( ).../content-page.php:22
100.23457736512apply_filters( ).../post-template.php:256
110.23467736912WP_Hook->apply_filters( ).../plugin.php:205
120.23637742440do_shortcode( ).../class-wp-hook.php:310
130.23657748496preg_replace_callback ( ).../shortcodes.php:273
144.08127757416do_shortcode_tag( ).../shortcodes.php:273
154.08127757888bicluster_genes_shortcode( ).../shortcodes.php:433
ID: 552f35f1b744335b89d585fb
# Conditions: 172
# Genes: 15
Residual: 0.36317403837974

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1
    • MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
    • H37Rv.hypoxia.2hr.rep.1
    • H37Rv.hypoxia.2hr.rep.4
    • H37Rv.hypoxia.2hr.rep.6
    • NRP.Day6..2
    • NRP.Day6..3
    • NRP.Day8..1
    • NRP.Day8..2
    • NRP.Day8..3
    • NRP.Day10..1
    • NRP.Day10..2
    • NRP.Day10..3
    • NRP.Day12..2
    • NRP.Day12..3
    • NRP.Day14..1
    • NRP.Day14..2
    • NRP.Day14..4
    • NRP.Day14..6
    • NRP.Day14..7
    • NRP.Day14..8
    • NRP.Day14..9
    • NRP.Day20..1
    • NRP.Day20..2
    • Mtm.0.2ug.mL.vs.ctrl.8h.1.x
    • Mtm.0.2ug.mL.vs.ctrl.8h.2.x
    • Mtm.0.2ug.mL.vs.ctrl.12h.1.x
    • X4mM.H2O2vsctrl..2h.A
    • X4mM.H2O2.ctrl..2h...1
    • X4mM.H2O2.ctrl..2h...2
    • X4mM.H2O2.ctrl..4h...1
    • X4mM.H2O2.ctrl..4h...2
    • X4mM.H2O2vsctrl..4h.
    • X4mM.H2O2vsctrl..4h.A
    • H2O2.4mM.vs.ctrl.8h.1
    • X20mJ.UVvsctrl..6h.
    • UV.20J.vs.ctrl.8h.1
    • UV.40J.vs.8h.2
    • UV.40J.vs.ctrl.8h.1
    • UV.60J.vs.ctrl.6h.1
    • H37Rv.hypoxia.4hr.rep.2
    • H37Rv.diamide.1h.rep.1
    • H37Rv.diamide.1h.rep.2
    • H37Rv.diamide.1h.rep.4
    • H37Rv.diamide.1h.rep.6
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.3
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
    • CHP_25uM_1h_01
    • Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
    • H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
    • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
    • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
    • BCG.2hr.phagosomal.profile
    • M..tuberculosis.CDC1551.2hr.phagosome.expression.profile
    • MTB.in.Wild.type.macrophages.for.24hrs
    • MTB.in.Wild.type.macrophages.for.48hrs
    • MTB.in.Wild.type.macrophages...IFNg.for.4hrs
    • MTB.in.Wild.type.macrophages...IFNg.for.24hrs
    • MTB.in.Wild.type.macrophages...IFNg.for.48hrs
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.1
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.6
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.6
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.6
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.3
    • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.3
    • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.6
    • Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
    • Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
    • Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
    • Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
    • Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
    • SG2.B0_N02A09c3
    • SG2.D0_N02A01c5
    • SG6.H0_N5A03cy.5
    • SG6_A0_N7A10cy.3
    • SG7.AT0_N11A01cy.5
    • SG7.CT0_N11A03cy.5
    • SG8.A.Day.0.pre_fix_N37A04cy.5
    • SG8.B.Day.0.pre_N37A12cy.3
    • SG8.C.Day.0.pre_N27A07cy.3
    • SG8.D.Day.0.pre_N27A10cy.3
    • SG8.C.Day.0.post_N37A10cy.5
    • SG8.D.Day.0.post_N27A11cy.3
    • SG.ISB.3.0B_N30A01cy.5
    • SG.ISB.3.0C_N30A02cy.3
    • SG8.C.Day.1_N27A09cy.3
    • SG8.D.Day.1_N27A12cy.3
    • SG7.DT1_N11A08cy.5
    • SG7.CT1_N11A07cy.5
    • SG7.BT1_N11A06cy.5
    • SG6_B1_N7A11cy.5
    • SG6_A1_N7A11cy.3
    • SG6.D1_N5A05cy.5
    • SG6.C1_N5A04cy.5
    • SG2.D1_N02A02c5
    • SG2.B1_N02A10c3
    • SG2.A1_N02A02c3
    • SG2.A2_N02A03c3
    • SG2.D2_N02A03c5
    • SG2.A3_N02A04c3
    • SG2.B3_N02A12c3
    • SG2.D3_N02A04c5
    • SG8.A.Day.5_N37A10cy.3
    • SG2.B5_N02A09c5
    • SG2.B7_N02A10c5
    • SG2.A7_N02A06c3
    • SG6D.T7_N11A02cy.3
    • SG6_A7_N7A12cy.3
    • SG7.T7D_N11A11cy.5
    • SG8.A.Day.7_N37A11cy.3
    • SG12.C0_N32A05cy.5
    • SG12.A4_N32A04cy.3
    • SG12.B4_N32A12cy.3
    • SG12.B6_N32A01cy.5
    • SG12.A8_N32A06cy.3
    • SG12.C8_N32A10cy.5
    • SG12.C24_N32A11cy.5
    • SG12.B24_N32A03cy.5
    • SG12.A24_N32A07cy.3
    • SG2.A8_N02A07c3
    • SG2.D8_N02A07c5
    • SG6D.T8_N11A03cy.3
    • SG7.T8C_N11A07cy.3
    • SG7.T8D_N11A08cy.3
    • SG.ISB.3.8A_N30A04cy.5
    • SG2.B9_N02A12c5
    • SG2.D9_N02A08c5
    • SG6.A14_N8A10cy.5
    • SG6.B14_N8A11cy.5
    • A00470_Q1_t30_diamide
    • A00437_Q1_t30_diamide
    • A00437_Q2_t60_diamide
    • A00436_Q2_t60_diamide
    • A00436_Q3_t90_diamide
    • Mtm.0.2ug.mL.vs.ctrl.8h.2.y
    • Mtm.0.2ug.mL.vs.ctrl.12h.1.y