( ! ) Warning: file_get_contents(https://mtb-egrin2.systemsbiology.net/api/api/v1.0.0/bicluster_info/552f378db744335b89d58f88): failed to open stream: HTTP request failed! HTTP/1.1 500 Internal Server Error in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 666 | ||||
---|---|---|---|---|
Call Stack | ||||
# | Time | Memory | Function | Location |
1 | 0.0000 | 399816 | {main}( ) | .../index.php:0 |
2 | 0.0001 | 400096 | require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ) | .../index.php:17 |
3 | 0.1793 | 7195104 | require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ) | .../wp-blog-header.php:19 |
4 | 0.1822 | 7198848 | include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ) | .../template-loader.php:106 |
5 | 0.2856 | 7719608 | get_template_part( ) | .../page.php:28 |
6 | 0.2856 | 7720184 | locate_template( ) | .../general-template.php:206 |
7 | 0.2856 | 7720312 | load_template( ) | .../template.php:720 |
8 | 0.2857 | 7720624 | require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ) | .../template.php:787 |
9 | 0.2865 | 7737800 | the_content( ) | .../content-page.php:22 |
10 | 0.2867 | 7738048 | apply_filters( ) | .../post-template.php:256 |
11 | 0.2867 | 7738448 | WP_Hook->apply_filters( ) | .../plugin.php:205 |
12 | 0.2877 | 7743976 | do_shortcode( ) | .../class-wp-hook.php:310 |
13 | 0.2877 | 7750032 | preg_replace_callback ( ) | .../shortcodes.php:273 |
14 | 0.2878 | 7750656 | do_shortcode_tag( ) | .../shortcodes.php:273 |
15 | 0.2878 | 7750656 | bicluster_info_shortcode( ) | .../shortcodes.php:433 |
16 | 0.2878 | 7750856 | file_get_contents ( ) | .../short_codes.php:666 |
( ! ) Notice: Trying to get property 'bicluster' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 667 | ||||
---|---|---|---|---|
Call Stack | ||||
# | Time | Memory | Function | Location |
1 | 0.0000 | 399816 | {main}( ) | .../index.php:0 |
2 | 0.0001 | 400096 | require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ) | .../index.php:17 |
3 | 0.1793 | 7195104 | require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ) | .../wp-blog-header.php:19 |
4 | 0.1822 | 7198848 | include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ) | .../template-loader.php:106 |
5 | 0.2856 | 7719608 | get_template_part( ) | .../page.php:28 |
6 | 0.2856 | 7720184 | locate_template( ) | .../general-template.php:206 |
7 | 0.2856 | 7720312 | load_template( ) | .../template.php:720 |
8 | 0.2857 | 7720624 | require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ) | .../template.php:787 |
9 | 0.2865 | 7737800 | the_content( ) | .../content-page.php:22 |
10 | 0.2867 | 7738048 | apply_filters( ) | .../post-template.php:256 |
11 | 0.2867 | 7738448 | WP_Hook->apply_filters( ) | .../plugin.php:205 |
12 | 0.2877 | 7743976 | do_shortcode( ) | .../class-wp-hook.php:310 |
13 | 0.2877 | 7750032 | preg_replace_callback ( ) | .../shortcodes.php:273 |
14 | 0.2878 | 7750656 | do_shortcode_tag( ) | .../shortcodes.php:273 |
15 | 0.2878 | 7750656 | bicluster_info_shortcode( ) | .../shortcodes.php:433 |
( ! ) Notice: Trying to get property 'id' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 669 | ||||
---|---|---|---|---|
Call Stack | ||||
# | Time | Memory | Function | Location |
1 | 0.0000 | 399816 | {main}( ) | .../index.php:0 |
2 | 0.0001 | 400096 | require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ) | .../index.php:17 |
3 | 0.1793 | 7195104 | require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ) | .../wp-blog-header.php:19 |
4 | 0.1822 | 7198848 | include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ) | .../template-loader.php:106 |
5 | 0.2856 | 7719608 | get_template_part( ) | .../page.php:28 |
6 | 0.2856 | 7720184 | locate_template( ) | .../general-template.php:206 |
7 | 0.2856 | 7720312 | load_template( ) | .../template.php:720 |
8 | 0.2857 | 7720624 | require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ) | .../template.php:787 |
9 | 0.2865 | 7737800 | the_content( ) | .../content-page.php:22 |
10 | 0.2867 | 7738048 | apply_filters( ) | .../post-template.php:256 |
11 | 0.2867 | 7738448 | WP_Hook->apply_filters( ) | .../plugin.php:205 |
12 | 0.2877 | 7743976 | do_shortcode( ) | .../class-wp-hook.php:310 |
13 | 0.2877 | 7750032 | preg_replace_callback ( ) | .../shortcodes.php:273 |
14 | 0.2878 | 7750656 | do_shortcode_tag( ) | .../shortcodes.php:273 |
15 | 0.2878 | 7750656 | bicluster_info_shortcode( ) | .../shortcodes.php:433 |
( ! ) Notice: Trying to get property 'num_conditions' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 670 | ||||
---|---|---|---|---|
Call Stack | ||||
# | Time | Memory | Function | Location |
1 | 0.0000 | 399816 | {main}( ) | .../index.php:0 |
2 | 0.0001 | 400096 | require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ) | .../index.php:17 |
3 | 0.1793 | 7195104 | require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ) | .../wp-blog-header.php:19 |
4 | 0.1822 | 7198848 | include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ) | .../template-loader.php:106 |
5 | 0.2856 | 7719608 | get_template_part( ) | .../page.php:28 |
6 | 0.2856 | 7720184 | locate_template( ) | .../general-template.php:206 |
7 | 0.2856 | 7720312 | load_template( ) | .../template.php:720 |
8 | 0.2857 | 7720624 | require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ) | .../template.php:787 |
9 | 0.2865 | 7737800 | the_content( ) | .../content-page.php:22 |
10 | 0.2867 | 7738048 | apply_filters( ) | .../post-template.php:256 |
11 | 0.2867 | 7738448 | WP_Hook->apply_filters( ) | .../plugin.php:205 |
12 | 0.2877 | 7743976 | do_shortcode( ) | .../class-wp-hook.php:310 |
13 | 0.2877 | 7750032 | preg_replace_callback ( ) | .../shortcodes.php:273 |
14 | 0.2878 | 7750656 | do_shortcode_tag( ) | .../shortcodes.php:273 |
15 | 0.2878 | 7750656 | bicluster_info_shortcode( ) | .../shortcodes.php:433 |
( ! ) Notice: Trying to get property 'num_genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 671 | ||||
---|---|---|---|---|
Call Stack | ||||
# | Time | Memory | Function | Location |
1 | 0.0000 | 399816 | {main}( ) | .../index.php:0 |
2 | 0.0001 | 400096 | require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ) | .../index.php:17 |
3 | 0.1793 | 7195104 | require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ) | .../wp-blog-header.php:19 |
4 | 0.1822 | 7198848 | include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ) | .../template-loader.php:106 |
5 | 0.2856 | 7719608 | get_template_part( ) | .../page.php:28 |
6 | 0.2856 | 7720184 | locate_template( ) | .../general-template.php:206 |
7 | 0.2856 | 7720312 | load_template( ) | .../template.php:720 |
8 | 0.2857 | 7720624 | require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ) | .../template.php:787 |
9 | 0.2865 | 7737800 | the_content( ) | .../content-page.php:22 |
10 | 0.2867 | 7738048 | apply_filters( ) | .../post-template.php:256 |
11 | 0.2867 | 7738448 | WP_Hook->apply_filters( ) | .../plugin.php:205 |
12 | 0.2877 | 7743976 | do_shortcode( ) | .../class-wp-hook.php:310 |
13 | 0.2877 | 7750032 | preg_replace_callback ( ) | .../shortcodes.php:273 |
14 | 0.2878 | 7750656 | do_shortcode_tag( ) | .../shortcodes.php:273 |
15 | 0.2878 | 7750656 | bicluster_info_shortcode( ) | .../shortcodes.php:433 |
( ! ) Notice: Trying to get property 'residual' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 672 | ||||
---|---|---|---|---|
Call Stack | ||||
# | Time | Memory | Function | Location |
1 | 0.0000 | 399816 | {main}( ) | .../index.php:0 |
2 | 0.0001 | 400096 | require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ) | .../index.php:17 |
3 | 0.1793 | 7195104 | require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ) | .../wp-blog-header.php:19 |
4 | 0.1822 | 7198848 | include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ) | .../template-loader.php:106 |
5 | 0.2856 | 7719608 | get_template_part( ) | .../page.php:28 |
6 | 0.2856 | 7720184 | locate_template( ) | .../general-template.php:206 |
7 | 0.2856 | 7720312 | load_template( ) | .../template.php:720 |
8 | 0.2857 | 7720624 | require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ) | .../template.php:787 |
9 | 0.2865 | 7737800 | the_content( ) | .../content-page.php:22 |
10 | 0.2867 | 7738048 | apply_filters( ) | .../post-template.php:256 |
11 | 0.2867 | 7738448 | WP_Hook->apply_filters( ) | .../plugin.php:205 |
12 | 0.2877 | 7743976 | do_shortcode( ) | .../class-wp-hook.php:310 |
13 | 0.2877 | 7750032 | preg_replace_callback ( ) | .../shortcodes.php:273 |
14 | 0.2878 | 7750656 | do_shortcode_tag( ) | .../shortcodes.php:273 |
15 | 0.2878 | 7750656 | bicluster_info_shortcode( ) | .../shortcodes.php:433 |
ID:
# Conditions:
# Genes:
Residual:
# Conditions:
# Genes:
Residual:
Bicluster Motifs
Bicluster Genes
- Rv0040c
- Rv0165c
- Rv0312
- Rv0346c
- Rv0360c
- Rv0460
- Rv0888
- Rv0930
- Rv1251c
- Rv1252c
- Rv1428c
- Rv1632c
- Rv1754c
- Rv1815
- Rv3057c
- Rv3500c
- Rv3772
Bicluster Conditions
- MTB.strain.1254.Ctrl.vs.high.aeration.rep1
- MTB.strain.1254.Ctrl.vs.high.aeration.rep2
- MTB.strain.1254.Ctrl.vs.high.aeration.rep3
- MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1
- MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
- H37Rv.hypoxia.2hr.rep.2
- H37Rv.hypoxia.2hr.rep.3
- H37Rv.hypoxia.2hr.rep.4
- H37Rv.hypoxia.2hr.rep.5
- H37Rv.hypoxia.2hr.rep.6
- NRP.Day6..2
- NRP.Day8..3
- NRP.Day10..1
- NRP.Day10..2
- NRP.Day12..1
- NRP.Day12..3
- NRP.Day14..2
- NRP.Day14..3
- NRP.Day14..7
- NRP.Day14..8
- NRP.Day30..1
- Mtm.0.2ug.mL.vs.ctrl.8h.1.x
- Mtm.0.2ug.mL.vs.ctrl.12h.1.x
- H37Rv.hypoxia.4hr.rep.5
- H37Rv.hypoxia.4hr.rep.6
- H37Rv.hypoxia.8hr.rep.2
- H37Rv.hypoxia.1.day.rep.4
- H37Rv.hypoxia.1.day.rep.9
- H37Rv.hypoxia.1.day.rep.10
- H37Rv.hypoxia.4.day.rep.1
- H37Rv.hypoxia.4.day.rep.2
- H37Rv.hypoxia.4.day.rep.4
- H37Rv.hypoxia.4.day.rep.5
- H37Rv.hypoxia.4.day.rep.7
- H37Rv.hypoxia.7.day.rep.2
- Whole.Lung.Surfactant.2hrs.rep.2
- Whole.Lung.Surfactant.30min.rep.4
- Extracted.Lung.Surfactant.2hrs.rep.1
- Extracted.Lung.Surfactant.30min.rep.3
- Purified.Surfactant.Lipids.2hrs.rep.1
- Purified.Surfactant.Lipids.30min.rep.1
- Purified.Surfactant.Lipids.30min.rep.2
- Purified.Human.SP.A.Coated.2hrs.rep1
- Purified.Human.SP.A.Coated.2hrs.rep2
- Starvation_1254_OA50_12h_02
- Starvation_1254_OA50_12h_03
- Starvation_1254_OA50_12h_04
- Starvation_1254_OA50_24h_01
- Starvation_1254_OA50_24h_03
- Starvation_1254_OA50_3d_03
- Starvation_1254_OA50_5d_01
- Starvation_1254_OA50_5d_02
- Starvation_1254_OA50_5d_03
- Starvation_1254_OA50_5d_04
- Starvation_1254_OA50_6h_04
- Starvation_1254_PA50_24h_03
- Starvation_1254_PA50_6h_03
- Starvation_1254_PA50_6h_04
- Starvation_OA50_24h_01
- Starvation_OA50_24h_02
- Starvation_OA50_24h_03
- Starvation_OA50_24h_04
- Starvation_OA50_6h_01
- Starvation_OA50_6h_03
- Starvation_OA50_6h_04
- H37Rv.reaeration.for.1hrs.rep.2
- H37Rv.reaeration.for.1hrs.rep.4
- H37Rv.reaeration.for.1hrs.rep.5
- H37Rv.reaeration.for.1hrs.rep.6
- H37Rv.reaeration.for.1hrs.rep.8
- H37Rv.reaeration.for.4hrs.rep.1
- H37Rv.reaeration.for.4hrs.rep.2
- H37Rv.reaeration.for.4hrs.rep.3
- H37Rv.reaeration.for.4hrs.rep.4
- H37Rv.reaeration.for.6hrs.rep.3
- H37Rv.reaeration.for.6hrs.rep.4
- H37Rv.reaeration.for.6hrs.rep.5
- H37Rv.reaeration.for.12hrs.rep.1
- H37Rv.reaeration.for.12hrs.rep.3
- H37Rv.reaeration.for.12hrs.rep.5
- H37Rv.reaeration.for.12hrs.rep.6
- H37Rv.reaeration.for.24hrs.rep.3
- H37Rv.reaeration.for.24hrs.rep.4
- SG2.A0_N02A01c3
- SG6.G0_N5A02cy.5
- SG6_A0_N7A10cy.3
- SG7.AT0_N11A01cy.5
- SG7.DT0_N11A04cy.5
- SG8.A.Day.0.pre_fix_N37A04cy.5
- SG8.B.Day.0.pre_N37A12cy.3
- SG8.C.Day.0.post_N27A08cy.3
- SG8.C.Day.0.pre_N27A07cy.3
- SG8.D.Day.0.pre_N27A10cy.3
- SG8.C.Day.0.post_N37A10cy.5
- SG8.D.Day.0.post_N27A11cy.3
- SG.ISB.3.0A_N30A01cy.3
- SG.ISB.3.0B_N30A01cy.5
- SG.ISB.3.0C_N30A02cy.3
- SG7.DT1_N11A08cy.5
- SG7.CT1_N11A07cy.5
- SG7.BT1_N11A06cy.5
- SG6_B1_N7A11cy.5
- SG6_A1_N7A11cy.3
- SG2.B1_N02A10c3
- SG2.A1_N02A02c3
- SG8.B.Day.2_N37A06cy.5
- SG2.B2_N02A11c3
- SG2.B3_N02A12c3
- SG2.D3_N02A04c5
- SG8.B.Day.5_N37A08cy.5
- SG2.A5_N02A05c3
- SG2.D5_N02A05c5
- SG2.B7_N02A10c5
- SG6C.T7_N11A01cy.3
- SG6_B7_N7A12cy.5
- SG7.T7B_N11A09cy.5
- SG7.T7D_N11A11cy.5
- SG8.B.Day.7_N37A09cy.5
- SG8.A.Day.7_N37A11cy.3
- SG.ISB.3.7B_N30A03cy.3
- SG.ISB.3.7C_N30A03cy.5
- SG12.C0_N32A05cy.5
- SG12.B0_N32A09cy.3
- SG12.A0_N32A01cy.3
- SG12.B2_N32A11cy.3
- SG12.B4_N32A12cy.3
- SG12.C4_N32A08cy.5
- SG12.C6_N32A09cy.5
- SG12.C8_N32A10cy.5
- SG2.A8_N02A07c3
- SG6.D8_N5A09cy.5
- SG.ISB.3.8A_N30A04cy.5
- SG.ISB.3.8C_N30A05cy.5
- SG2.D9_N02A08c5
- SG6.D11_N8A09cy.5
- SG6.C11_N5A12cy.5
- SG6.B11_N5A11cy.5
- SG6.A11_N5A10cy.5
- SG7.T12D_N11A12cy.3
- SG7.T12C_N11A11cy.3
- SG7.T12B_N11A10cy.3
- SG7.T12A_N11A09cy.3
- SG12.B120_N32A04cy.5
- SG.ISB.3.12C_N30A07cy.5
- SG.ISB.3.12D_N30A08cy.3
- SG6.B14_N8A11cy.5
- Mtm.0.2ug.mL.vs.ctrl.12h.1.y