Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19827193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.20307197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.31567718072get_template_part( ).../page.php:28
60.31567718648locate_template( ).../general-template.php:206
70.31567718776load_template( ).../template.php:720
80.31577719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.31707736264the_content( ).../content-page.php:22
100.31737736512apply_filters( ).../post-template.php:256
110.31737736912WP_Hook->apply_filters( ).../plugin.php:205
120.31887742440do_shortcode( ).../class-wp-hook.php:310
130.31907748496preg_replace_callback ( ).../shortcodes.php:273
141.52187749456do_shortcode_tag( ).../shortcodes.php:273
151.52197749456bicluster_motifs_shortcode( ).../shortcodes.php:433
161.52207749584file_get_contents ( ).../short_codes.php:74
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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19827193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.20307197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.31567718072get_template_part( ).../page.php:28
60.31567718648locate_template( ).../general-template.php:206
70.31567718776load_template( ).../template.php:720
80.31577719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.31707736264the_content( ).../content-page.php:22
100.31737736512apply_filters( ).../post-template.php:256
110.31737736912WP_Hook->apply_filters( ).../plugin.php:205
120.31887742440do_shortcode( ).../class-wp-hook.php:310
130.31907748496preg_replace_callback ( ).../shortcodes.php:273
142.75097751496do_shortcode_tag( ).../shortcodes.php:273
152.75097751968bicluster_genes_shortcode( ).../shortcodes.php:433
162.75117752472file_get_contents ( ).../short_codes.php:15
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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19827193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.20307197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.31567718072get_template_part( ).../page.php:28
60.31567718648locate_template( ).../general-template.php:206
70.31567718776load_template( ).../template.php:720
80.31577719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.31707736264the_content( ).../content-page.php:22
100.31737736512apply_filters( ).../post-template.php:256
110.31737736912WP_Hook->apply_filters( ).../plugin.php:205
120.31887742440do_shortcode( ).../class-wp-hook.php:310
130.31907748496preg_replace_callback ( ).../shortcodes.php:273
142.75097751496do_shortcode_tag( ).../shortcodes.php:273
152.75097751968bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 18
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19827193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.20307197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.31567718072get_template_part( ).../page.php:28
60.31567718648locate_template( ).../general-template.php:206
70.31567718776load_template( ).../template.php:720
80.31577719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.31707736264the_content( ).../content-page.php:22
100.31737736512apply_filters( ).../post-template.php:256
110.31737736912WP_Hook->apply_filters( ).../plugin.php:205
120.31887742440do_shortcode( ).../class-wp-hook.php:310
130.31907748496preg_replace_callback ( ).../shortcodes.php:273
142.75097751496do_shortcode_tag( ).../shortcodes.php:273
152.75097751968bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 29
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19827193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.20307197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.31567718072get_template_part( ).../page.php:28
60.31567718648locate_template( ).../general-template.php:206
70.31567718776load_template( ).../template.php:720
80.31577719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.31707736264the_content( ).../content-page.php:22
100.31737736512apply_filters( ).../post-template.php:256
110.31737736912WP_Hook->apply_filters( ).../plugin.php:205
120.31887742440do_shortcode( ).../class-wp-hook.php:310
130.31907748496preg_replace_callback ( ).../shortcodes.php:273
142.75097751496do_shortcode_tag( ).../shortcodes.php:273
152.75097751968bicluster_genes_shortcode( ).../shortcodes.php:433
ID: 552f442fb744335b89d5d9b3
# Conditions: 146
# Genes: 15
Residual: 0.38690343443419

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • pH4.8vspH6.8..2h.A
    • pH4.8vspH6.8..4h.A
    • pH4.8vspH6.8..5.5h.
    • pH4.8vspH6.8..11h.
    • pH5.2vspH6.8..10.5h.
    • pH5.6vspH6.8..4h.
    • pH5.6vspH6.8..7h.
    • X4mM.H2O2vsctrl..2h.A
    • X4mM.H2O2.ctrl..2h...1
    • X4mM.H2O2.ctrl..2h...2
    • H37Rv.diamide.1h.rep.1
    • H37Rv.diamide.1h.rep.5
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.5
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6
    • CHP_25uM_1h_01
    • CHP_25uM_24h_01
    • CHP_25uM_2h_01
    • Glycerol_1._10M_01
    • Mtb.response.to.pH.6.5..6.replicates.
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.6
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.1
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.6
    • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.1
    • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.6
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.1
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.6
    • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
    • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.2
    • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.4
    • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.5
    • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.6
    • A00470_Q1_t30_diamide
    • A00470_Q2_t60_diamide
    • A00437_Q1_t30_diamide
    • A00437_Q2_t60_diamide
    • A00437_Q3_t90_diamide
    • A00436_Q1_t30_diamide
    • A00436_Q2_t60_diamide
    • X1ug.mL..59vsDMSO..6h
    • X10ug.mL..59vsDMSO..6hA
    • X1ug.mL..109vsDMSO..6hA
    • X10ug.mL..109vsDMSO..6hA
    • X.109..1ug.mL..vs.DMSO..12h..replicate.2..GEO.acc.GSM28052.
    • X1ug.mL..241vsDMSO..6h
    • X10ug.mL..241vsDMSO..6h
    • X40ug.mL.5CL.pH5.6..2h..1
    • X40ug.mL.5CL.pH5.6..4h..2
    • X80ug.mL.5CL.pH5.6..2h.
    • X0.12mg.mL.BZA.pH5.6..2h.
    • X0.12mg.mL.BZA.pH5.6..4h..2
    • X0.12mg.mL.BZAvspH5.6..5h.
    • X0.12mg.mL.BZAvspH5.6..7h.
    • X0.12mg.mL.BZAvspH5.6..11h.
    • X0.12mg.mL.NamvspH5.6..5.5h.
    • X1.2mg.mL.NamvspH5.6..10.5h.
    • X0.12mg.mL.PZA.pH5.6..2h.
    • X0.12mg.mL.PZAvspH5.6..4h.A
    • X1.2mg.mL.PZA.pH5.6..2h..
    • X1.2mg.mL.PZAvspH5.6..7h.A
    • X1.2mg.mL.PZAvspH5.6..10.5h.
    • DIPED.5ug.mL.vs.DMSO.12h.1
    • DIPED.5ug.mL.vs.DMSO.12h.2
    • DIPED.10ug.mL.vs.DMSO.12h.1
    • DIPED.50ug.mL.vs.DMSO.12h.1
    • DIPED.50ug.mL.vs.DMSO.12h.2
    • DIPED..100ug.mL..DMSO..12h..1
    • X0.1mg.mLTriclosanvsEtOH.6hB
    • X0.1mg.mLTriclosanvsEtOH.6hC
    • X10ug.mL.TriclosanvsDMSO..6hA
    • X10ug.mL.TriclosanvsDMSO..6hB
    • X50ug.mL.TriclosanvsEtOH..6h
    • X100ug.mL.TriclosanvsEtOH..6hA
    • X10ug.mL.EMBvsDMSO..6hA
    • EMB..10ug.mL..DMSO..12h
    • EMB.10ug.mL.vs.DMSO.12h.3
    • EMB.10ug.mL.vs.DMSO.12h.4
    • X0.32ug.mL.CervsEtOH..6hA
    • X0.5ug.mL.CervsEtOH..6h
    • X0.5ug.mL.CervsEtOH..6hA
    • X0.5ug.mL.CeruleninvsDMSO..6hA
    • X0.5ug.mL.CeruleninvsDMSO..6hB
    • X0.5ug.mL.CeruleninvsDMSO..6hC
    • X100ug.mL.Cephalexin.Ctrl..6h
    • X100ug.mLCephalexinvsEtOH.6hA
    • X12ug.mLEthionamidevsEtOH.6h
    • X40ug.mL.EtavsEtOH..6h
    • X0.2ug.mL.INH.EtOH..6h
    • X130ug.mL.TLMvsDMSO..6hA
    • X0.13mg.mL.TLMvsDMSO..6hA
    • X0.2mg.mL.TLMvsEtOH..6h
    • X0.2mg.mL.TLMvsEtOH..6hA
    • X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.2
    • X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3.x
    • X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.x
    • X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
    • X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1
    • X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
    • X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.1
    • X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.2
    • X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.1
    • X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.2
    • X130ug.ml.TLM.vs.DMSO.6hrs.rep.1
    • X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.2
    • X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.2
    • X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.3
    • X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.4
    • X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.2
    • MTB1254_INH_20MIN
    • X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.y
    • X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3.y
    • H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
    • H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
    • H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.1
    • H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.2
    • H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
    • H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
    • H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.2
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.2
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.1
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.1
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2
    • H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.DS.rep.2
    • H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.1
    • H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.2