Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.21187193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.21707197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.32857718072get_template_part( ).../page.php:28
60.32857718648locate_template( ).../general-template.php:206
70.32857718776load_template( ).../template.php:720
80.32867719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.33007736264the_content( ).../content-page.php:22
100.33047736512apply_filters( ).../post-template.php:256
110.33047736912WP_Hook->apply_filters( ).../plugin.php:205
120.33217742440do_shortcode( ).../class-wp-hook.php:310
130.33237748496preg_replace_callback ( ).../shortcodes.php:273
142.79237757416do_shortcode_tag( ).../shortcodes.php:273
152.79247757888bicluster_genes_shortcode( ).../shortcodes.php:433
162.79257758392file_get_contents ( ).../short_codes.php:15
( ! ) Notice: Trying to get property 'genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 16
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.21187193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.21707197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.32857718072get_template_part( ).../page.php:28
60.32857718648locate_template( ).../general-template.php:206
70.32857718776load_template( ).../template.php:720
80.32867719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.33007736264the_content( ).../content-page.php:22
100.33047736512apply_filters( ).../post-template.php:256
110.33047736912WP_Hook->apply_filters( ).../plugin.php:205
120.33217742440do_shortcode( ).../class-wp-hook.php:310
130.33237748496preg_replace_callback ( ).../shortcodes.php:273
142.79237757416do_shortcode_tag( ).../shortcodes.php:273
152.79247757888bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 18
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.21187193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.21707197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.32857718072get_template_part( ).../page.php:28
60.32857718648locate_template( ).../general-template.php:206
70.32857718776load_template( ).../template.php:720
80.32867719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.33007736264the_content( ).../content-page.php:22
100.33047736512apply_filters( ).../post-template.php:256
110.33047736912WP_Hook->apply_filters( ).../plugin.php:205
120.33217742440do_shortcode( ).../class-wp-hook.php:310
130.33237748496preg_replace_callback ( ).../shortcodes.php:273
142.79237757416do_shortcode_tag( ).../shortcodes.php:273
152.79247757888bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 29
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.21187193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.21707197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.32857718072get_template_part( ).../page.php:28
60.32857718648locate_template( ).../general-template.php:206
70.32857718776load_template( ).../template.php:720
80.32867719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.33007736264the_content( ).../content-page.php:22
100.33047736512apply_filters( ).../post-template.php:256
110.33047736912WP_Hook->apply_filters( ).../plugin.php:205
120.33217742440do_shortcode( ).../class-wp-hook.php:310
130.33237748496preg_replace_callback ( ).../shortcodes.php:273
142.79237757416do_shortcode_tag( ).../shortcodes.php:273
152.79247757888bicluster_genes_shortcode( ).../shortcodes.php:433
ID: 552f5356b744335b89d62f5f
# Conditions: 155
# Genes: 14
Residual: 0.39921395648744

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.2.x
    • MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.4.x
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.1.x
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.6.x
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.2.x
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.3
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.3
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.4
    • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.2.x
    • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.4.x
    • H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.1
    • H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.2
    • H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3
    • H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4
    • CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.3
    • CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.5
    • pH4.8vspH6.8..4h.A
    • pH4.8vspH6.8..4h.B
    • pH4.8vspH6.8..5.5h.
    • pH4.8vspH6.8..6h.
    • pH4.8vspH6.8..7h.
    • pH4.8vspH6.8..11h.
    • pH5.2vspH6.8..5.5h.
    • pH5.2vspH6.8..10.5h.
    • pH5.2vspH6.8..11h.
    • pH5.2vspH6.8..16h.
    • pH5.6vspH6.8..5h.
    • pH5.6vspH6.8..16h.
    • X0.02mM.GSNOvsDMSO..6h
    • X0.1mM.GSNO.DMSO..3.5h
    • X0.1mM.GSNOvsDMSO..4h
    • X0.1mM.GSNO.DMSO..6h
    • X0.1mM.GSNOvsDMSO..6h.
    • X0.1mM.GSNOvsDMSO..6h.A
    • X4mM.H2O2vsctrl..1h.
    • X4mM.H2O2vsctrl..2h.A
    • X4mM.H2O2.ctrl..2h...1
    • X4mM.H2O2.ctrl..2h...2
    • X4mM.H2O2.ctrl..4h...2
    • X20mJ.UVvsctrl..6h.
    • UV.20J.vs.ctrl.8h.1
    • X25J.UV.ctrl..2h.
    • X25J.UVvs.ctrl..6h.
    • X40mJ.UV.ctrl..6h.
    • UV.40J.vs.ctrl.8h.1
    • X60J.UV.ctrl..2h.
    • X60J.UVvsctrl..6h.
    • H37Rv.diamide.1h.rep.2
    • H37Rv.diamide.1h.rep.4
    • H37Rv.diamide.1h.rep.5
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.5
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6
    • Whole.Lung.Surfactant.2hrs.rep.1
    • Whole.Lung.Surfactant.30min.rep.1
    • Whole.Lung.Surfactant.30min.rep.3
    • Extracted.Lung.Surfactant.2hrs.rep.1
    • Extracted.Lung.Surfactant.2hrs.rep.2
    • Extracted.Lung.Surfactant.30min.rep.3
    • Extracted.Lung.Surfactant.30min.rep.4
    • Purified.Surfactant.Lipids.2hrs.rep.1
    • Purified.Surfactant.Lipids.30min.rep.2
    • Purified.Human.SP.A.Uncoated.2hrs.rep3
    • CHP_25uM_1h_01
    • Starvation_1254_OA50_12h_01
    • Starvation_1254_OA50_12h_02
    • Starvation_1254_OA50_12h_03
    • Starvation_1254_OA50_24h_02
    • Starvation_1254_OA50_5d_04
    • Starvation_1254_OA50_6h_01
    • Starvation_1254_OA50_6h_02
    • Starvation_1254_OA50_6h_03
    • Starvation_1254_OA50_6h_04
    • Starvation_1254_PA50_24h_01
    • Starvation_1254_PA50_6h_02
    • Starvation_OA50_24h_02
    • Starvation_OA50_6h_03
    • Mtb.response.to.pH.5.5..6.replicates.
    • Mtb.response.to.pH.6.5..6.replicates.
    • MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.2.y
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.1
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.2.y
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.1
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.6
    • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.2.y
    • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.4.y
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.1
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.6
    • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
    • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.1
    • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.2
    • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.5
    • WT_140mM_NaCl_Rep1
    • WT_140mM_NaCl_Rep3
    • A00437_Q2_t60_diamide
    • A00436_Q2_t60_diamide
    • A00436_Q3_t90_diamide
    • X0.2ug.mL..111891.DMSO..5.5h..1
    • X0.2ug.mL..111891.DMSO..5.5h..2
    • X0.2ug.mL..111891.DMSO..5.5h..3
    • X0.5ug.mL..111891vsDMSO.6h
    • X0.5ug.mL..111891vsDMSO.6hA
    • X1.ug.mL..111891vsDMSO..6h
    • X1ug.mL..111891vsDMSO..6h
    • X2ug.mL..111891vsDMSO..6h
    • X1ug.mL..111891.DMSO..12h..2
    • X0.5ug.mL..111895vsDMSO.6h
    • X2ug.mL..111895vsDMSO..6h
    • X1ug.mL..121940.DMSO..12h
    • X0.5ug.mL..124196vsDMSO..6h
    • X1ug.mL..124196vsDMSO..6h
    • X1ug.mL..124196vsDMSO..6hA
    • X100uM.DipyridylvsCtrl..6hA
    • X100uM.Dipyridylvsctrl..6h
    • X150uM.Deferroxaminevsctrl..6hB
    • X250uM.DeferroxaminevsDMSO..6h
    • X9ug.mLAscidideminNpvsDMSO.6h
    • H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep.1
    • H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep2
    • H37Rv.Ctrl.vs.5.ug.ml.garlic.extract.6hrs
    • H37Rv.Ctrl.vs.10.ug.ml.garlic.extract.6hrs