Bicluster – MTB EGRIN 2.0

( ! ) Warning: file_get_contents(https://mtb-egrin2.systemsbiology.net/api/api/v1.0.0/bicluster_pssms/552f5f6db744335b89d677cf): failed to open stream: HTTP request failed! HTTP/1.1 500 Internal Server Error in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 74
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398656	{main}( )	.../index.php:0
2	0.0001	398936	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1682	7193568	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1709	7197312	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2618	7718072	get_template_part( )	.../page.php:28
6	0.2618	7718648	locate_template( )	.../general-template.php:206
7	0.2618	7718776	load_template( )	.../template.php:720
8	0.2619	7719088	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2632	7736264	the_content( )	.../content-page.php:22
10	0.2636	7736512	apply_filters( )	.../post-template.php:256
11	0.2636	7736912	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2648	7742440	do_shortcode( )	.../class-wp-hook.php:310
13	0.2650	7748496	preg_replace_callback ( )	.../shortcodes.php:273
14	2.0920	7749456	do_shortcode_tag( )	.../shortcodes.php:273
15	2.0920	7749456	bicluster_motifs_shortcode( )	.../shortcodes.php:433
16	2.0921	7749584	file_get_contents ( )	.../short_codes.php:74

ID: 552f5f6db744335b89d677cf
# Conditions: 110
# Genes: 15
Residual: 0.26933160292627

Bicluster Motifs

Bicluster Genes

Rv0243
Rv0290
Rv0291
Rv0510
Rv0511
Rv0512
Rv0513
Rv0514
Rv0526
Rv0528
Rv0869c
Rv1108c
Rv3212
Rv3306c
Rv3365c

Bicluster Conditions

H37Rv.0.05..SDS.exposure.for.1h.rep.2
H37Rv.0.05..SDS.exposure.for.1h.rep.4
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
H37Rv.vs..H37Rv.SDS.treated.rep.6
H37Rv.hypoxia.2hr.rep.6
NRP.Day6..1
NRP.Day10..2
H37Rv.hypoxia.4hr.rep.2
H37Rv.hypoxia.4hr.rep.7
H37Rv.hypoxia.8hr.rep.1
H37Rv.hypoxia.8hr.rep.2
H37Rv.hypoxia.8hr.rep.3
H37Rv.hypoxia.12hr.rep.1
H37Rv.hypoxia.12hr.rep.2
H37Rv.hypoxia.12hr.rep.3
H37Rv.hypoxia.1.day.rep.2
H37Rv.hypoxia.1.day.rep.3
H37Rv.hypoxia.1.day.rep.5
H37Rv.hypoxia.1.day.rep.6
H37Rv.hypoxia.1.day.rep.7
H37Rv.hypoxia.1.day.rep.10
H37Rv.hypoxia.4.day.rep.1
H37Rv.hypoxia.4.day.rep.2
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.4.day.rep.4
H37Rv.hypoxia.4.day.rep.5
H37Rv.hypoxia.4.day.rep.6
H37Rv.hypoxia.7.day.rep.1
H37Rv.hypoxia.7.day.rep.2
H37Rv.hypoxia.7.day.rep.3
H37Rv.hypoxia.7.day.rep.4
H37Rv.hypoxia.7.day.rep.5
H37Rv.hypoxia.7.day.rep.7
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.1
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.5
SG2.A0_N02A01c3
SG2.D0_N02A01c5
SG6.G0_N5A02cy.5
SG6.H0_N5A03cy.5
SG6_A0_N7A10cy.3
SG6_B0_N7A10cy.5
SG7.AT0_N11A01cy.5
SG7.BT0_N11A02cy.5
SG8.A.Day.0.pre_fix_N37A04cy.5
SG8.B.Day.0.pre_N37A12cy.3
SG8.C.Day.0.post_N27A08cy.3
SG8.C.Day.0.pre_N27A07cy.3
SG8.D.Day.0.pre_N27A10cy.3
SG.ISB.3.0A_N30A01cy.3
SG8.C.Day.1_N37A11cy.5
SG8.C.Day.1_N27A09cy.3
SG8.D.Day.1_N27A12cy.3
SG8.B.Day.1_N37A05cy.5
SG8.A.Day.1_fix_N37A03cy.5
SG7.DT1_N11A08cy.5
SG7.CT1_N11A07cy.5
SG7.BT1_N11A06cy.5
SG6.C1_N5A04cy.5
SG8.A.Day.3_N37A09cy.3
SG8.B.Day.3_N37A07cy.5
SG2.A3_N02A04c3
SG2.D3_N02A04c5
SG8.A.Day.5_N37A10cy.3
SG8.B.Day.5_N37A08cy.5
SG2.A5_N02A05c3
SG2.B5_N02A09c5
SG2.D5_N02A05c5
SG2.D7_N02A06c5
SG2.B7_N02A10c5
SG2.A7_N02A06c3
SG6D.T7_N11A02cy.3
SG6C.T7_N11A01cy.3
SG6_B7_N7A12cy.5
SG6_A7_N7A12cy.3
SG7.T7B_N11A09cy.5
SG8.B.Day.7_N37A09cy.5
SG.ISB.3.7A_N30A02cy.5
SG.ISB.3.7B_N30A03cy.3
SG.ISB.3.7C_N30A03cy.5
SG12.A1_N32A02cy.3
SG12.B1_N32A10cy.3
SG12.C1_N32A06cy.5
SG12.A2_N32A03cy.3
SG12.B2_N32A11cy.3
SG12.C2_N32A07cy.5
SG12.B4_N32A12cy.3
SG12.C4_N32A08cy.5
SG12.C6_N32A09cy.5
SG12.A8_N32A06cy.3
SG2.A8_N02A07c3
SG2.B8_N02A11c5
SG2.D8_N02A07c5
SG6.B8_N5A07cy.5
SG6.A8_N5A06cy.5
SG7.T8C_N11A07cy.3
SG.ISB.3.8B_N30A05cy.3
SG2.A9_N02A08c3
SG2.B9_N02A12c5
SG2.D9_N02A08c5
SG6.C11_N5A12cy.5
SG6.A11_N5A10cy.5
SG7.T12D_N11A12cy.3
SG12.B120_N32A04cy.5
SG12.A120_N32A08cy.3
SG.ISB.3.12A_N30A06cy.5
SG.ISB.3.12C_N30A07cy.5
SG.ISB.3.12D_N30A08cy.3
SG6.A14_N8A10cy.5

Column members cluster 552f5f6db744335b89d677cf Species (TODO)

H37Rv.0.05..SDS.exposure.for.1h.rep.2
H37Rv.0.05..SDS.exposure.for.1h.rep.4
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
H37Rv.vs..H37Rv.SDS.treated.rep.6
H37Rv.hypoxia.2hr.rep.6
NRP.Day6..1
NRP.Day10..2
H37Rv.hypoxia.4hr.rep.2
H37Rv.hypoxia.4hr.rep.7
H37Rv.hypoxia.8hr.rep.1
H37Rv.hypoxia.8hr.rep.2
H37Rv.hypoxia.8hr.rep.3
H37Rv.hypoxia.12hr.rep.1
H37Rv.hypoxia.12hr.rep.2
H37Rv.hypoxia.12hr.rep.3
H37Rv.hypoxia.1.day.rep.2
H37Rv.hypoxia.1.day.rep.3
H37Rv.hypoxia.1.day.rep.5
H37Rv.hypoxia.1.day.rep.6
H37Rv.hypoxia.1.day.rep.7
H37Rv.hypoxia.1.day.rep.10
H37Rv.hypoxia.4.day.rep.1
H37Rv.hypoxia.4.day.rep.2
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.4.day.rep.4
H37Rv.hypoxia.4.day.rep.5
H37Rv.hypoxia.4.day.rep.6
H37Rv.hypoxia.7.day.rep.1
H37Rv.hypoxia.7.day.rep.2
H37Rv.hypoxia.7.day.rep.3
H37Rv.hypoxia.7.day.rep.4
H37Rv.hypoxia.7.day.rep.5
H37Rv.hypoxia.7.day.rep.7
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.1
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.5
SG2.A0_N02A01c3
SG2.D0_N02A01c5
SG6.G0_N5A02cy.5
SG6.H0_N5A03cy.5
SG6_A0_N7A10cy.3
SG6_B0_N7A10cy.5
SG7.AT0_N11A01cy.5
SG7.BT0_N11A02cy.5
SG8.A.Day.0.pre_fix_N37A04cy.5
SG8.B.Day.0.pre_N37A12cy.3
SG8.C.Day.0.post_N27A08cy.3
SG8.C.Day.0.pre_N27A07cy.3
SG8.D.Day.0.pre_N27A10cy.3
SG.ISB.3.0A_N30A01cy.3
SG8.C.Day.1_N37A11cy.5
SG8.C.Day.1_N27A09cy.3
SG8.D.Day.1_N27A12cy.3
SG8.B.Day.1_N37A05cy.5
SG8.A.Day.1_fix_N37A03cy.5
SG7.DT1_N11A08cy.5
SG7.CT1_N11A07cy.5
SG7.BT1_N11A06cy.5
SG6.C1_N5A04cy.5
SG8.A.Day.3_N37A09cy.3
SG8.B.Day.3_N37A07cy.5
SG2.A3_N02A04c3
SG2.D3_N02A04c5
SG8.A.Day.5_N37A10cy.3
SG8.B.Day.5_N37A08cy.5
SG2.A5_N02A05c3
SG2.B5_N02A09c5
SG2.D5_N02A05c5
SG2.D7_N02A06c5
SG2.B7_N02A10c5
SG2.A7_N02A06c3
SG6D.T7_N11A02cy.3
SG6C.T7_N11A01cy.3
SG6_B7_N7A12cy.5
SG6_A7_N7A12cy.3
SG7.T7B_N11A09cy.5
SG8.B.Day.7_N37A09cy.5
SG.ISB.3.7A_N30A02cy.5
SG.ISB.3.7B_N30A03cy.3
SG.ISB.3.7C_N30A03cy.5
SG12.A1_N32A02cy.3
SG12.B1_N32A10cy.3
SG12.C1_N32A06cy.5
SG12.A2_N32A03cy.3
SG12.B2_N32A11cy.3
SG12.C2_N32A07cy.5
SG12.B4_N32A12cy.3
SG12.C4_N32A08cy.5
SG12.C6_N32A09cy.5
SG12.A8_N32A06cy.3
SG2.A8_N02A07c3
SG2.B8_N02A11c5
SG2.D8_N02A07c5
SG6.B8_N5A07cy.5
SG6.A8_N5A06cy.5
SG7.T8C_N11A07cy.3
SG.ISB.3.8B_N30A05cy.3
SG2.A9_N02A08c3
SG2.B9_N02A12c5
SG2.D9_N02A08c5
SG6.C11_N5A12cy.5
SG6.A11_N5A10cy.5
SG7.T12D_N11A12cy.3
SG12.B120_N32A04cy.5
SG12.A120_N32A08cy.3
SG.ISB.3.12A_N30A06cy.5
SG.ISB.3.12C_N30A07cy.5
SG.ISB.3.12D_N30A08cy.3
SG6.A14_N8A10cy.5