Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16527193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17007197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28177718072get_template_part( ).../page.php:28
60.28177718648locate_template( ).../general-template.php:206
70.28177718776load_template( ).../template.php:720
80.28187719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28307736264the_content( ).../content-page.php:22
100.28337736512apply_filters( ).../post-template.php:256
110.28337736912WP_Hook->apply_filters( ).../plugin.php:205
120.28487742440do_shortcode( ).../class-wp-hook.php:310
130.28507748496preg_replace_callback ( ).../shortcodes.php:273
141.11267757416do_shortcode_tag( ).../shortcodes.php:273
151.11277757888bicluster_genes_shortcode( ).../shortcodes.php:433
161.11287758392file_get_contents ( ).../short_codes.php:15

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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16527193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17007197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28177718072get_template_part( ).../page.php:28
60.28177718648locate_template( ).../general-template.php:206
70.28177718776load_template( ).../template.php:720
80.28187719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28307736264the_content( ).../content-page.php:22
100.28337736512apply_filters( ).../post-template.php:256
110.28337736912WP_Hook->apply_filters( ).../plugin.php:205
120.28487742440do_shortcode( ).../class-wp-hook.php:310
130.28507748496preg_replace_callback ( ).../shortcodes.php:273
141.11267757416do_shortcode_tag( ).../shortcodes.php:273
151.11277757888bicluster_genes_shortcode( ).../shortcodes.php:433

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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16527193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17007197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28177718072get_template_part( ).../page.php:28
60.28177718648locate_template( ).../general-template.php:206
70.28177718776load_template( ).../template.php:720
80.28187719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28307736264the_content( ).../content-page.php:22
100.28337736512apply_filters( ).../post-template.php:256
110.28337736912WP_Hook->apply_filters( ).../plugin.php:205
120.28487742440do_shortcode( ).../class-wp-hook.php:310
130.28507748496preg_replace_callback ( ).../shortcodes.php:273
141.11267757416do_shortcode_tag( ).../shortcodes.php:273
151.11277757888bicluster_genes_shortcode( ).../shortcodes.php:433

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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16527193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17007197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28177718072get_template_part( ).../page.php:28
60.28177718648locate_template( ).../general-template.php:206
70.28177718776load_template( ).../template.php:720
80.28187719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28307736264the_content( ).../content-page.php:22
100.28337736512apply_filters( ).../post-template.php:256
110.28337736912WP_Hook->apply_filters( ).../plugin.php:205
120.28487742440do_shortcode( ).../class-wp-hook.php:310
130.28507748496preg_replace_callback ( ).../shortcodes.php:273
141.11267757416do_shortcode_tag( ).../shortcodes.php:273
151.11277757888bicluster_genes_shortcode( ).../shortcodes.php:433
ID: 552f61cfb744335b89d6849b
# Conditions: 141
# Genes: 17
Residual: 0.51852146420688

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • Strain.CDC1551..replicate.3
    • Strain.1006...replicate.1
    • Strain.1006...replicate.2
    • Strain.1254...replicate.4
    • Strain.1254...replicate.2
    • Strain.1254...replicate.3
    • Strain.1254...replicate.1
    • Strain.1843..replicate.1
    • Strain.3160..replicate.2
    • Strain.9700665..replicate.1
    • Strain.9700665..replicate.2
    • Strain.9802501..replicate1
    • Strain.9802501..replicate.2
    • Strain.9802826..replicate.3
    • Strain.M3061a..replicate.3
    • Strain.M3061a..replicate.4
    • MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.1.x
    • MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.2.x
    • MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.3.x
    • MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.4.x
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.1.x
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.3
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.1.x
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.2.x
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3.x
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.4.x
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.3
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.3
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.4
    • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.2.x
    • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.3.x
    • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.1.x
    • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.2.x
    • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.4.x
    • MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.1
    • MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.2
    • MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.3
    • H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.1
    • H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.2
    • H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3
    • H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4
    • CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.3
    • CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.4
    • MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.1
    • MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.2
    • MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.3
    • MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.4
    • MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.5
    • MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.6
    • H37Rv.0.2..Oxygen..2h..4
    • H37Rv.0.2..Oxygen..2h..5
    • H37Rv.0.2..Oxygen..2h..6
    • H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.1
    • H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3
    • H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
    • H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
    • Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
    • Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
    • Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
    • Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
    • Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.2
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.3
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.4
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.5
    • Glycerol_1.
    • Glycerol_1._10M_01
    • CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.2
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.1
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.3
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.4
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.4
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.5
    • MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.2.y
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.1.y
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.1.y
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.2.y
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3.y
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.4.y
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.4hrs.rep.3
    • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.2.y
    • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.3.y
    • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.2.y
    • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.4.y
    • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.1.y
    • MTB.strain1254.vs.MTB.strain.1254.for.DETA.NO.exp.control.rep.2
    • hip.mutant.KL2801..biological.rep2
    • hip.mutant.KL2825..biological.rep2
    • hip.mutant.HTS1090..biological.rep1
    • hip.mutant.HTS1090..biological.rep2
    • hip.mutant.HT1116..biological.rep1
    • hip.mutant.HT1117..biological.rep2
    • hip.mutant.HT1130..biological.rep1
    • hip.mutant.HT1130..biological.rep2
    • hip.mutant.HT1134..biological.rep1
    • hip.mutant.HT1134..biological.rep2
    • hip.mutant.HT1137..biological.rep1
    • hip.mutant.HT1137..biological.rep2
    • hip.mutant.HT1170..biological.rep1
    • hip.mutant.HT1170..biological.rep2