Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000399816{main}( ).../index.php:0
20.0001400096require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18897195104require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19237198848include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28647719608get_template_part( ).../page.php:28
60.28657720184locate_template( ).../general-template.php:206
70.28657720312load_template( ).../template.php:720
80.28657720624require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28797737800the_content( ).../content-page.php:22
100.28817738048apply_filters( ).../post-template.php:256
110.28817738448WP_Hook->apply_filters( ).../plugin.php:205
120.28977743976do_shortcode( ).../class-wp-hook.php:310
130.28997750032preg_replace_callback ( ).../shortcodes.php:273
140.28997750656do_shortcode_tag( ).../shortcodes.php:273
150.28997750656bicluster_info_shortcode( ).../shortcodes.php:433
160.29007750856file_get_contents ( ).../short_codes.php:666
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Call Stack
#TimeMemoryFunctionLocation
10.0000399816{main}( ).../index.php:0
20.0001400096require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18897195104require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19237198848include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28647719608get_template_part( ).../page.php:28
60.28657720184locate_template( ).../general-template.php:206
70.28657720312load_template( ).../template.php:720
80.28657720624require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28797737800the_content( ).../content-page.php:22
100.28817738048apply_filters( ).../post-template.php:256
110.28817738448WP_Hook->apply_filters( ).../plugin.php:205
120.28977743976do_shortcode( ).../class-wp-hook.php:310
130.28997750032preg_replace_callback ( ).../shortcodes.php:273
140.28997750656do_shortcode_tag( ).../shortcodes.php:273
150.28997750656bicluster_info_shortcode( ).../shortcodes.php:433
( ! ) Notice: Trying to get property 'id' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 669
Call Stack
#TimeMemoryFunctionLocation
10.0000399816{main}( ).../index.php:0
20.0001400096require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18897195104require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19237198848include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28647719608get_template_part( ).../page.php:28
60.28657720184locate_template( ).../general-template.php:206
70.28657720312load_template( ).../template.php:720
80.28657720624require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28797737800the_content( ).../content-page.php:22
100.28817738048apply_filters( ).../post-template.php:256
110.28817738448WP_Hook->apply_filters( ).../plugin.php:205
120.28977743976do_shortcode( ).../class-wp-hook.php:310
130.28997750032preg_replace_callback ( ).../shortcodes.php:273
140.28997750656do_shortcode_tag( ).../shortcodes.php:273
150.28997750656bicluster_info_shortcode( ).../shortcodes.php:433
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Call Stack
#TimeMemoryFunctionLocation
10.0000399816{main}( ).../index.php:0
20.0001400096require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18897195104require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19237198848include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28647719608get_template_part( ).../page.php:28
60.28657720184locate_template( ).../general-template.php:206
70.28657720312load_template( ).../template.php:720
80.28657720624require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28797737800the_content( ).../content-page.php:22
100.28817738048apply_filters( ).../post-template.php:256
110.28817738448WP_Hook->apply_filters( ).../plugin.php:205
120.28977743976do_shortcode( ).../class-wp-hook.php:310
130.28997750032preg_replace_callback ( ).../shortcodes.php:273
140.28997750656do_shortcode_tag( ).../shortcodes.php:273
150.28997750656bicluster_info_shortcode( ).../shortcodes.php:433
( ! ) Notice: Trying to get property 'num_genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 671
Call Stack
#TimeMemoryFunctionLocation
10.0000399816{main}( ).../index.php:0
20.0001400096require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18897195104require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19237198848include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28647719608get_template_part( ).../page.php:28
60.28657720184locate_template( ).../general-template.php:206
70.28657720312load_template( ).../template.php:720
80.28657720624require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28797737800the_content( ).../content-page.php:22
100.28817738048apply_filters( ).../post-template.php:256
110.28817738448WP_Hook->apply_filters( ).../plugin.php:205
120.28977743976do_shortcode( ).../class-wp-hook.php:310
130.28997750032preg_replace_callback ( ).../shortcodes.php:273
140.28997750656do_shortcode_tag( ).../shortcodes.php:273
150.28997750656bicluster_info_shortcode( ).../shortcodes.php:433
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Call Stack
#TimeMemoryFunctionLocation
10.0000399816{main}( ).../index.php:0
20.0001400096require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18897195104require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19237198848include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28647719608get_template_part( ).../page.php:28
60.28657720184locate_template( ).../general-template.php:206
70.28657720312load_template( ).../template.php:720
80.28657720624require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28797737800the_content( ).../content-page.php:22
100.28817738048apply_filters( ).../post-template.php:256
110.28817738448WP_Hook->apply_filters( ).../plugin.php:205
120.28977743976do_shortcode( ).../class-wp-hook.php:310
130.28997750032preg_replace_callback ( ).../shortcodes.php:273
140.28997750656do_shortcode_tag( ).../shortcodes.php:273
150.28997750656bicluster_info_shortcode( ).../shortcodes.php:433
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Call Stack
#TimeMemoryFunctionLocation
10.0000399816{main}( ).../index.php:0
20.0001400096require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18897195104require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19237198848include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28647719608get_template_part( ).../page.php:28
60.28657720184locate_template( ).../general-template.php:206
70.28657720312load_template( ).../template.php:720
80.28657720624require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28797737800the_content( ).../content-page.php:22
100.28817738048apply_filters( ).../post-template.php:256
110.28817738448WP_Hook->apply_filters( ).../plugin.php:205
120.28977743976do_shortcode( ).../class-wp-hook.php:310
130.28997750032preg_replace_callback ( ).../shortcodes.php:273
140.99317751888do_shortcode_tag( ).../shortcodes.php:273
150.99327751888bicluster_motifs_shortcode( ).../shortcodes.php:433
160.99337752016file_get_contents ( ).../short_codes.php:74
ID:
# Conditions:
# Genes:
Residual:

Bicluster Motifs

Bicluster Genes

  • Rv0232
  • Rv0279c
  • Rv0840c
  • Rv1397c
  • Rv1577c
  • Rv1929c
  • Rv1991c
  • Rv2059
  • Rv2650c
  • Rv2651c
  • Rv2656c
  • Rv2663
  • Rv2688c
  • Rv2827c
  • Rv3180c
  • Rv3182
  • Rv3183
  • Rv3188
  • Rv3189
  • Rv3384c

Bicluster Conditions

  • H37Rv.0.05..SDS.exposure.for.1h.rep.1
  • H37Rv.0.05..SDS.exposure.for.1h.rep.2
  • H37Rv.0.05..SDS.exposure.for.1h.rep.3
  • H37Rv.0.05..SDS.exposure.for.1h.rep.5
  • H37Rv.0.05..SDS.exposure.for.1h.rep.6
  • MTB.strain.1254.Ctrl.vs.high.aeration.rep1
  • MTB.strain.1254.Ctrl.vs.high.aeration.rep2
  • MTB.strain.1254.Ctrl.vs.high.aeration.rep3
  • H37Rv.vs..H37Rv.SDS.treated.rep.2
  • High.iron.wt.vs.low.iron.wt.1a
  • High.iron.wt.vs.low.iron.wt.2b
  • High.iron.wt.vs.low.iron.wt.3a
  • High.iron.wt.vs.low.iron.wt.3b
  • H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2
  • H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.3
  • H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.4
  • H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.6
  • Whole.Lung.Surfactant.2hrs.rep.2
  • Whole.Lung.Surfactant.30min.rep.2
  • Whole.Lung.Surfactant.30min.rep.3
  • Whole.Lung.Surfactant.30min.rep.4
  • Extracted.Lung.Surfactant.2hrs.rep.2
  • Extracted.Lung.Surfactant.30min.rep.1
  • Extracted.Lung.Surfactant.30min.rep.3
  • Purified.Surfactant.Lipids.2hrs.rep.1
  • Purified.Surfactant.Lipids.30min.rep.1
  • Purified.Human.SP.A.Uncoated.2hrs.rep1
  • Purified.Human.SP.A.Uncoated.2hrs.rep2
  • Purified.Human.SP.A.Uncoated.2hrs.rep3
  • Purified.Human.SP.A.Uncoated.2hrs.rep4
  • SDS_3h_01
  • SDS_60min_01
  • Starvation_1254_OA50_12h_02
  • Starvation_1254_OA50_12h_03
  • Starvation_1254_OA50_12h_04
  • Starvation_1254_OA50_24h_01
  • Starvation_1254_OA50_24h_02
  • Starvation_1254_OA50_24h_03
  • Starvation_1254_OA50_24h_04
  • Starvation_1254_OA50_3d_01
  • Starvation_1254_OA50_3d_04
  • Starvation_1254_OA50_5d_03
  • Starvation_1254_OA50_5d_04
  • Starvation_1254_OA50_6h_01
  • Starvation_1254_OA50_6h_02
  • Starvation_1254_OA50_6h_03
  • Starvation_1254_PA50_24h_01
  • Starvation_1254_PA50_24h_02
  • Starvation_1254_PA50_24h_03
  • Starvation_1254_PA50_24h_04
  • Starvation_1254_PA50_6h_01
  • Starvation_1254_PA50_6h_02
  • Starvation_1254_PA50_6h_03
  • Starvation_1254_PA50_6h_04
  • Starvation_OA50_24h_03
  • Starvation_OA50_24h_04
  • Starvation_OA50_6h_01
  • Starvation_OA50_6h_02
  • Starvation_OA50_6h_03
  • Starvation_OA50_6h_04
  • Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
  • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
  • H37Rv.reaeration.for.1hrs.rep.8
  • H37Rv.reaeration.for.4hrs.rep.3
  • H37Rv.reaeration.for.4hrs.rep.6
  • H37Rv.reaeration.for.4hrs.rep.7
  • H37Rv.reaeration.for.4hrs.rep.8
  • H37Rv.reaeration.for.6hrs.rep.4
  • H37Rv.reaeration.for.12hrs.rep.1
  • H37Rv.reaeration.for.12hrs.rep.3
  • H37Rv.reaeration.for.12hrs.rep.5
  • H37Rv.reaeration.for.24hrs.rep.2
  • BCG.24hr.phagosomal.profile
  • M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
  • MTB.in.Wild.type.macrophages.for.4hrs
  • MTB.in.Wild.type.macrophages.for.24hrs
  • MTB.in.Wild.type.macrophages.for.48hrs
  • MTB.in.Wild.type.macrophages...IFNg.for.4hrs
  • MTB.in.Wild.type.macrophages...IFNg.for.48hrs
  • Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
  • Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
  • Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
  • Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
  • Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
  • Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
  • MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.1
  • X0.2ug.mL..111891.DMSO..5.5h..2
  • X0.2ug.mL..111891.DMSO..5.5h..3
  • X0.5ug.mL..111891vsDMSO.6h
  • X0.5ug.mL..111891vsDMSO.6hA
  • X1.ug.mL..111891vsDMSO..6h
  • X1ug.mL..111891vsDMSO..6h
  • X1ug.mL..111891.DMSO..12h..1
  • X1ug.mL..111891.DMSO..12h..2
  • X0.5ug.mL..111895vsDMSO..6h
  • X0.5ug.mL..111895vsDMSO.6h
  • X1ug.mL..111895vsDMSO..6h
  • X1ug.mL..111895vsDMSO..6hA
  • X2ug.mL..111895vsDMSO..6hB
  • X0.5ug.mL..121940vsDMSO.6h
  • X0.5ug.mL..121940vsDMSO.6hA
  • X2ug.mL..121940vsDMSO..6h
  • X2ug.mL..121940vsDMSO..6hA
  • X1ug.mL..121940.DMSO..12h
  • X0.5ug.mL..124196vsDMSO..6h
  • X0.5ug.mL..124196vsDMSO..6hA
  • X1ug.mL..124196vsDMSO..6h
  • X1ug.mL..124196vsDMSO..6hA
  • X10ug.mL.EconazolevsEtOH..6h
  • X10ug.mL.EconazolevsEtOH..6hA
  • X24ug.mL.Econazole.DMSO..6h..1
  • X10ug.mLchlorpromazinevsctrl.6h
  • X10ug.mLchlorpromazinevsctrl.6hA
  • X10ug.mL.ChlorprovsEtOH
  • X10ug.mL.ChlorprovsEtOH..6h
  • X10ug.mL.ClotrimvsEtOH..6hA
  • X10ug.mL.clotrimvsEtOH..6h
  • X24ug.mL.cltrmazole.DMS..6h..1
  • X24ug.mL.cltrmazole.DMS..6h..2
  • X24ug.mL.cltrmazole.DMS..6h..3
  • X10uM.CCCP.DMSO..6h
  • X1mM.DNP.DMSO..6h..1
  • X1mM.DNP.DMSO..6h..2
  • X2.5mM.Dinitrophenol.DMSO..6h
  • X20uM.DCCD.DMSO..6h..1
  • X20uM.DCCD.DMSO..6h..2
  • X100uM.DCCD.DMSO..6h
  • X100uM.DipyridylvsCtrl..6hA
  • X100uM.Dipyridylvsctrl..6h
  • X200uM.Dipyridylvsctrl..6hA
  • X150uM.Deferroxaminevsctrl..6hA
  • X150uM.Deferroxaminevsctrl..6hB
  • X6ug.mL.MenadionevsDMSO..6h
  • X10ug.mLmnd.Dubos.vsDMSO.6h
  • X50uM.NigericinvsDMSO..6h
  • X9ug.mLAscidideminNpvsDMSO.6hA
  • X10ug.mL.TRZ.DMSO..6h..1
  • X25ug.mL.TRZ.DMSO..6h
  • X50ug.mL.Thioridazine.DMSO..6h
  • X0.5uMValinomycinvsDMSO.6h
  • X1uM.ValinomycinvsDMSO..6h
  • X1uM.ValinomycinvsDMSO..6h.A
  • X10uM.ValinomycinvsDMSO..6h
  • X0.5uMValinomycin.70mMKClvsDMSO.6h
  • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.1
  • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.2