Bicluster – MTB EGRIN 2.0

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Call Stack
#	Time	Memory	Function	Location
1	0.0000	399816	{main}( )	.../index.php:0
2	0.0001	400096	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1701	7195104	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1734	7198848	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2878	7719608	get_template_part( )	.../page.php:28
6	0.2878	7720184	locate_template( )	.../general-template.php:206
7	0.2878	7720312	load_template( )	.../template.php:720
8	0.2879	7720624	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2889	7737800	the_content( )	.../content-page.php:22
10	0.2891	7738048	apply_filters( )	.../post-template.php:256
11	0.2891	7738448	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2902	7743976	do_shortcode( )	.../class-wp-hook.php:310
13	0.2903	7750032	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2903	7750656	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2903	7750656	bicluster_info_shortcode( )	.../shortcodes.php:433
16	0.2903	7750856	file_get_contents ( )	.../short_codes.php:666

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Call Stack
#	Time	Memory	Function	Location
1	0.0000	399816	{main}( )	.../index.php:0
2	0.0001	400096	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1701	7195104	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1734	7198848	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2878	7719608	get_template_part( )	.../page.php:28
6	0.2878	7720184	locate_template( )	.../general-template.php:206
7	0.2878	7720312	load_template( )	.../template.php:720
8	0.2879	7720624	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2889	7737800	the_content( )	.../content-page.php:22
10	0.2891	7738048	apply_filters( )	.../post-template.php:256
11	0.2891	7738448	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2902	7743976	do_shortcode( )	.../class-wp-hook.php:310
13	0.2903	7750032	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2903	7750656	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2903	7750656	bicluster_info_shortcode( )	.../shortcodes.php:433

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Call Stack
#	Time	Memory	Function	Location
1	0.0000	399816	{main}( )	.../index.php:0
2	0.0001	400096	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1701	7195104	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1734	7198848	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2878	7719608	get_template_part( )	.../page.php:28
6	0.2878	7720184	locate_template( )	.../general-template.php:206
7	0.2878	7720312	load_template( )	.../template.php:720
8	0.2879	7720624	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2889	7737800	the_content( )	.../content-page.php:22
10	0.2891	7738048	apply_filters( )	.../post-template.php:256
11	0.2891	7738448	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2902	7743976	do_shortcode( )	.../class-wp-hook.php:310
13	0.2903	7750032	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2903	7750656	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2903	7750656	bicluster_info_shortcode( )	.../shortcodes.php:433

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Call Stack
#	Time	Memory	Function	Location
1	0.0000	399816	{main}( )	.../index.php:0
2	0.0001	400096	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1701	7195104	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1734	7198848	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2878	7719608	get_template_part( )	.../page.php:28
6	0.2878	7720184	locate_template( )	.../general-template.php:206
7	0.2878	7720312	load_template( )	.../template.php:720
8	0.2879	7720624	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2889	7737800	the_content( )	.../content-page.php:22
10	0.2891	7738048	apply_filters( )	.../post-template.php:256
11	0.2891	7738448	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2902	7743976	do_shortcode( )	.../class-wp-hook.php:310
13	0.2903	7750032	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2903	7750656	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2903	7750656	bicluster_info_shortcode( )	.../shortcodes.php:433

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Call Stack
#	Time	Memory	Function	Location
1	0.0000	399816	{main}( )	.../index.php:0
2	0.0001	400096	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1701	7195104	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1734	7198848	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2878	7719608	get_template_part( )	.../page.php:28
6	0.2878	7720184	locate_template( )	.../general-template.php:206
7	0.2878	7720312	load_template( )	.../template.php:720
8	0.2879	7720624	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2889	7737800	the_content( )	.../content-page.php:22
10	0.2891	7738048	apply_filters( )	.../post-template.php:256
11	0.2891	7738448	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2902	7743976	do_shortcode( )	.../class-wp-hook.php:310
13	0.2903	7750032	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2903	7750656	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2903	7750656	bicluster_info_shortcode( )	.../shortcodes.php:433

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Call Stack
#	Time	Memory	Function	Location
1	0.0000	399816	{main}( )	.../index.php:0
2	0.0001	400096	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1701	7195104	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1734	7198848	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2878	7719608	get_template_part( )	.../page.php:28
6	0.2878	7720184	locate_template( )	.../general-template.php:206
7	0.2878	7720312	load_template( )	.../template.php:720
8	0.2879	7720624	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2889	7737800	the_content( )	.../content-page.php:22
10	0.2891	7738048	apply_filters( )	.../post-template.php:256
11	0.2891	7738448	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2902	7743976	do_shortcode( )	.../class-wp-hook.php:310
13	0.2903	7750032	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2903	7750656	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2903	7750656	bicluster_info_shortcode( )	.../shortcodes.php:433

ID:
# Conditions:
# Genes:
Residual:

Bicluster Motifs

Bicluster Genes

Rv0519c
Rv0693
Rv0694
Rv0695
Rv1632c
Rv1698
Rv1701
Rv1709
Rv1751
Rv1824
Rv2150c
Rv2151c
Rv2154c
Rv2681
Rv2967c
Rv3209
Rv3282
Rv3330
Rv3335c
Rv3717
Rv3811

Bicluster Conditions

Strain.CDC1551..replicate.1
Strain.1006...replicate.1
Strain.1254...replicate.4
Strain.1254...replicate.2
Strain.1254...replicate.1
Strain.1843...replicate.2
Strain.1843...replicate.3
Strain.1843..replicate.4
Strain.3160..replicate.1
Strain.3160...replicate.3
Strain.9700665..replicate.3
Strain.9800608..replicate.2
Strain.9800608...replicate.3
Strain.9802501..replicate.2
Strain.9802501..replicate.3
Strain.9802501..replicate.4
Strain.M3061a..replicate.1
Strain.M3061a..replicate.2
Strain.M3061a..replicate.3
Strain.M3061a..replicate.4
H37Rv.Vs.M.bovis.rep1
H37Rv.Vs.M.bovis.rep2
H37Rv.Vs.M.bovis.rep3
H37Rv.Vs.M.bovis.rep4
H37Rv.0.05..SDS.exposure.for.1h.rep.1
H37Rv.0.05..SDS.exposure.for.1h.rep.3
H37Rv.0.05..SDS.exposure.for.1h.rep.4
H37Rv.0.05..SDS.exposure.for.1h.rep.5
H37Rv.vs..H37Rv.SDS.treated.rep.1
H37Rv.vs..H37Rv.SDS.treated.rep.4
H37Rv.vs..H37Rv.SDS.treated.rep.5
X4mM.H2O2.ctrl..2h...1
X20mJ.UVvsctrl..6h.
X25J.UV.ctrl..2h.
X40mJ.UV.ctrl..6h.
H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
H37Rv.wild.type.Vs.H37Rv.wild.type.rep.1
H37Rv.wild.type.Vs.H37Rv.wild.type.rep.5
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.1
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.5
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.6
Whole.Lung.Surfactant.2hrs.rep.2
Whole.Lung.Surfactant.30min.rep.2
Whole.Lung.Surfactant.30min.rep.3
Whole.Lung.Surfactant.30min.rep.4
Whole.Lung.Surfactant.30min.rep.5
Extracted.Lung.Surfactant.30min.rep.1
Extracted.Lung.Surfactant.30min.rep.4
Purified.Surfactant.Lipids.2hrs.rep.2
Purified.Surfactant.Lipids.30min.rep.1
Purified.Human.SP.A.Coated.2hrs.rep1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
aceatate.induction.2
aceatate.induction.3
Acetate.3mM.10m.01
Acetate.3mM.10m.02
Acetate.3mM.10m.06
Acetate.3mM.10m_04
Acetate.3mM.2h.03
Acetate.3mM.2h.04
Acetate.3mM.2h.05
Acetate.3mM.2h.06
Acetate.3mM.30m.01
Acetate.3mM.30m.03
Acetate.3mM.30m.04
Acetate.3mM.30m.08
Acetate.3mM.60m.01
Glucose_5mM_10min_01
Glycerol_1.
Glycerol_1._30M_01
MTB1254_SDS_90MIN_01
CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.1
CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.2
CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.1
CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.2
CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2
CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.1
CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2
CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2
CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.1
CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2
CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.3
CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.2
CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.3
CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.1
CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.1
CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.3
CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2
CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3
CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.1
CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2
CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.1
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.1
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.2
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.1
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.2
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.3
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.4
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.5
BCG.2hr.phagosomal.profile
BCG.24hr.phagosomal.profile
M..tuberculosis.CDC1551.2hr.phagosome.expression.profile
MTB.in.Wild.type.macrophages.for.4hrs
MTB.in.Wild.type.macrophages.for.24hrs
MTB.in.Wild.type.macrophages.for.48hrs
MTB.in.Wild.type.macrophages...IFNg.for.4hrs
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.2
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.4
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.5
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.6
Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
hip.mutant.KL2825..biological.rep1
hip.mutant.HTS1090..biological.rep1
hip.mutant.HT1116..biological.rep1
hip.mutant.HT1116..biological.rep2
hip.mutant.HT1117..biological.rep1
hip.mutant.HT1130..biological.rep2
hip.mutant.HT1137..biological.rep2
hip.mutant.HT1170..biological.rep1

Column members cluster 552f7581b744335b89d6f4bf Species (TODO)

Strain.CDC1551..replicate.1
Strain.1006...replicate.1
Strain.1254...replicate.4
Strain.1254...replicate.2
Strain.1254...replicate.1
Strain.1843...replicate.2
Strain.1843...replicate.3
Strain.1843..replicate.4
Strain.3160..replicate.1
Strain.3160...replicate.3
Strain.9700665..replicate.3
Strain.9800608..replicate.2
Strain.9800608...replicate.3
Strain.9802501..replicate.2
Strain.9802501..replicate.3
Strain.9802501..replicate.4
Strain.M3061a..replicate.1
Strain.M3061a..replicate.2
Strain.M3061a..replicate.3
Strain.M3061a..replicate.4
H37Rv.Vs.M.bovis.rep1
H37Rv.Vs.M.bovis.rep2
H37Rv.Vs.M.bovis.rep3
H37Rv.Vs.M.bovis.rep4
H37Rv.0.05..SDS.exposure.for.1h.rep.1
H37Rv.0.05..SDS.exposure.for.1h.rep.3
H37Rv.0.05..SDS.exposure.for.1h.rep.4
H37Rv.0.05..SDS.exposure.for.1h.rep.5
H37Rv.vs..H37Rv.SDS.treated.rep.1
H37Rv.vs..H37Rv.SDS.treated.rep.4
H37Rv.vs..H37Rv.SDS.treated.rep.5
X4mM.H2O2.ctrl..2h...1
X20mJ.UVvsctrl..6h.
X25J.UV.ctrl..2h.
X40mJ.UV.ctrl..6h.
H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
H37Rv.wild.type.Vs.H37Rv.wild.type.rep.1
H37Rv.wild.type.Vs.H37Rv.wild.type.rep.5
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.1
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.5
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.6
Whole.Lung.Surfactant.2hrs.rep.2
Whole.Lung.Surfactant.30min.rep.2
Whole.Lung.Surfactant.30min.rep.3
Whole.Lung.Surfactant.30min.rep.4
Whole.Lung.Surfactant.30min.rep.5
Extracted.Lung.Surfactant.30min.rep.1
Extracted.Lung.Surfactant.30min.rep.4
Purified.Surfactant.Lipids.2hrs.rep.2
Purified.Surfactant.Lipids.30min.rep.1
Purified.Human.SP.A.Coated.2hrs.rep1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
aceatate.induction.2
aceatate.induction.3
Acetate.3mM.10m.01
Acetate.3mM.10m.02
Acetate.3mM.10m.06
Acetate.3mM.10m_04
Acetate.3mM.2h.03
Acetate.3mM.2h.04
Acetate.3mM.2h.05
Acetate.3mM.2h.06
Acetate.3mM.30m.01
Acetate.3mM.30m.03
Acetate.3mM.30m.04
Acetate.3mM.30m.08
Acetate.3mM.60m.01
Glucose_5mM_10min_01
Glycerol_1.
Glycerol_1._30M_01
MTB1254_SDS_90MIN_01
CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.1
CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.2
CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.1
CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.2
CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2
CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.1
CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2
CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2
CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.1
CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2
CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.3
CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.2
CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.3
CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.1
CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.1
CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.3
CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2
CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3
CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.1
CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2
CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.1
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.1
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.2
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.1
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.2
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.3
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.4
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.5
BCG.2hr.phagosomal.profile
BCG.24hr.phagosomal.profile
M..tuberculosis.CDC1551.2hr.phagosome.expression.profile
MTB.in.Wild.type.macrophages.for.4hrs
MTB.in.Wild.type.macrophages.for.24hrs
MTB.in.Wild.type.macrophages.for.48hrs
MTB.in.Wild.type.macrophages...IFNg.for.4hrs
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.2
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.4
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.5
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.6
Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
hip.mutant.KL2825..biological.rep1
hip.mutant.HTS1090..biological.rep1
hip.mutant.HT1116..biological.rep1
hip.mutant.HT1116..biological.rep2
hip.mutant.HT1117..biological.rep1
hip.mutant.HT1130..biological.rep2
hip.mutant.HT1137..biological.rep2
hip.mutant.HT1170..biological.rep1