Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.15387193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.15677197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.24017718072get_template_part( ).../page.php:28
60.24017718648locate_template( ).../general-template.php:206
70.24017718776load_template( ).../template.php:720
80.24017719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.24097736264the_content( ).../content-page.php:22
100.24117736512apply_filters( ).../post-template.php:256
110.24117736912WP_Hook->apply_filters( ).../plugin.php:205
120.24227742440do_shortcode( ).../class-wp-hook.php:310
130.24247748496preg_replace_callback ( ).../shortcodes.php:273
142.63187757416do_shortcode_tag( ).../shortcodes.php:273
152.63187757888bicluster_genes_shortcode( ).../shortcodes.php:433
162.63207758392file_get_contents ( ).../short_codes.php:15
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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.15387193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.15677197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.24017718072get_template_part( ).../page.php:28
60.24017718648locate_template( ).../general-template.php:206
70.24017718776load_template( ).../template.php:720
80.24017719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.24097736264the_content( ).../content-page.php:22
100.24117736512apply_filters( ).../post-template.php:256
110.24117736912WP_Hook->apply_filters( ).../plugin.php:205
120.24227742440do_shortcode( ).../class-wp-hook.php:310
130.24247748496preg_replace_callback ( ).../shortcodes.php:273
142.63187757416do_shortcode_tag( ).../shortcodes.php:273
152.63187757888bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 18
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.15387193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.15677197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.24017718072get_template_part( ).../page.php:28
60.24017718648locate_template( ).../general-template.php:206
70.24017718776load_template( ).../template.php:720
80.24017719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.24097736264the_content( ).../content-page.php:22
100.24117736512apply_filters( ).../post-template.php:256
110.24117736912WP_Hook->apply_filters( ).../plugin.php:205
120.24227742440do_shortcode( ).../class-wp-hook.php:310
130.24247748496preg_replace_callback ( ).../shortcodes.php:273
142.63187757416do_shortcode_tag( ).../shortcodes.php:273
152.63187757888bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 29
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.15387193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.15677197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.24017718072get_template_part( ).../page.php:28
60.24017718648locate_template( ).../general-template.php:206
70.24017718776load_template( ).../template.php:720
80.24017719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.24097736264the_content( ).../content-page.php:22
100.24117736512apply_filters( ).../post-template.php:256
110.24117736912WP_Hook->apply_filters( ).../plugin.php:205
120.24227742440do_shortcode( ).../class-wp-hook.php:310
130.24247748496preg_replace_callback ( ).../shortcodes.php:273
142.63187757416do_shortcode_tag( ).../shortcodes.php:273
152.63187757888bicluster_genes_shortcode( ).../shortcodes.php:433
ID: 552f7ad5b744335b89d712b8
# Conditions: 119
# Genes: 21
Residual: 0.35663988124736

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • H37Rv.0.05..SDS.exposure.for.1h.rep.1
    • H37Rv.0.05..SDS.exposure.for.1h.rep.3
    • H37Rv.0.05..SDS.exposure.for.1h.rep.4
    • H37Rv.0.05..SDS.exposure.for.1h.rep.5
    • MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.2
    • MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.1
    • MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.5
    • MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.6
    • H37Rv.vs..H37Rv.SDS.treated.rep.1
    • H37Rv.vs..H37Rv.SDS.treated.rep.2
    • H37Rv.vs..H37Rv.SDS.treated.rep.3
    • H37Rv.vs..H37Rv.SDS.treated.rep.4
    • H37Rv.vs..H37Rv.SDS.treated.rep.5
    • H37Rv.vs..H37Rv.SDS.treated.rep.6
    • High.iron.wt.vs.low.iron.wt.1a
    • High.iron.wt.vs.low.iron.wt.1b
    • High.iron.wt.vs.low.iron.wt.2a
    • High.iron.wt.vs.low.iron.wt.2b
    • H37Rv.0.2..Oxygen..2h..3
    • H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.2
    • H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.3
    • H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.4
    • H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.5
    • H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.6
    • PBS.Tween.7H9
    • H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.4
    • X20ug.ml.KCN.vs.DMSO.6hrs.x
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
    • Glycerol_1.
    • Glycerol_1._10M_01
    • Glycerol_1._30M_01
    • MTB1254_SDS_90MIN_02
    • MTB1254_SDS_90MIN_03
    • MTB1254_SDS_90MIN_04
    • SDS_60min_01
    • H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.2
    • H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2
    • Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
    • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Mtb.Erdman.strain.20.ppm.CO.rep.1
    • Mtb.Erdman.strain.20.ppm.CO.rep.2
    • Mtb.Erdman.strain.200.ppm.CO.rep.2
    • Mtb.Erdman.strain.2000.ppm.CO.rep.1
    • Mtb.Erdman.strain.2000.ppm.CO.rep.2
    • MTB.in.Wild.type.macrophages.for.4hrs
    • MTB.in.Wild.type.macrophages.for.24hrs
    • MTB.in.Wild.type.macrophages...IFNg.for.4hrs
    • MTB.in.Wild.type.macrophages...IFNg.for.24hrs
    • MTB.in.Wild.type.macrophages...IFNg.for.48hrs
    • Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
    • Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
    • Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
    • Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
    • Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
    • Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
    • Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
    • Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
    • Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
    • Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
    • Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
    • Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
    • Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
    • WT_140mM_NaCl_Rep3
    • MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.2
    • X0.1mMGSNO.10ug.mLmdvsDMSO.6h
    • X0.1mMGSNO.10ug.mLmdvsDMSO.6hA
    • X25ug.mLCPZ.0.1mMGSNO.DMSO..3
    • X5ug.mL.CFZ.0.1mM.GSNO.DMSO..2
    • X5ug.mLCFZ.0.1mMGSNOvsDMSO.A
    • X0.1mMGSNO.5ug.mLKCNvsDMSO.6h.A
    • X10ug.mL.EconazolevsEtOH..6hA
    • X13ug.mL.clfzine.DMSO..6h..1
    • X10ug.mLchlorpromazinevsctrl.6h
    • X10ug.mLchlorpromazinevsctrl.6hA
    • X10ug.mL.ChlorprovsEtOH
    • X10ug.mL.ChlorprovsEtOH..6h
    • X20ug.mL.chlorprmz.DMSO..6h..1
    • X20ug.mL.chlorprmz.DMSO..6h..2
    • X25ug.mL.CPZvsDMSO..6h.A
    • X25ug.mL.CPZvsDMSO..6h.B
    • X60ug.mL.ChlorprovsEtOH..6h
    • X10ug.mL.ClotrimvsEtOH..6hA
    • X10ug.mL.clotrimvsEtOH..6h
    • X24ug.mL.cltrmazole.DMS..6h..1
    • X50uM.CCCP.DMSO..6h..1
    • X50uM.CCCP.DMSO..6h..2
    • X0.5mM.DNP.DMSO..6h
    • X1mM.DNP.DMSO..6h..1
    • X1mM.DNP.DMSO..6h..2
    • X2.5mM.Dinitrophenol.DMSO..6h
    • X20uM.DCCD.DMSO..6h..1
    • X2mM.DTTvsDMSO..6h.A
    • X5ug.mL.KCN.DMSO..6h..1
    • X5ug.mL.KCN.DMSO..6h..2
    • X10ug.mL.menadionevsDMSO..6h
    • X10ug.mLmnd.Dubos.vsDMSO.6h
    • X50uM.NigericinvsDMSO..6h
    • X50uM.NigericinvsDMSO..6h.A
    • X10ug.mL.TRZ.DMSO..6h..2
    • X25ug.mL.TRZ.DMSO..6h
    • X50ug.mL.Thioridazine.DMSO..6h
    • X1uM.ValinomycinvsDMSO..6h.A
    • X1uM.ValinomycinvsDMSO..6h.B
    • X10uM.ValinomycinvsDMSO..6h
    • X0.5uMValinomycin.70mMKClvsDMSO.6h
    • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.2
    • CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.1
    • CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.2
    • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.2
    • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.1
    • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.2
    • CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.2
    • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.2