Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16177193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16667197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28437718072get_template_part( ).../page.php:28
60.28437718648locate_template( ).../general-template.php:206
70.28437718776load_template( ).../template.php:720
80.28437719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28577736264the_content( ).../content-page.php:22
100.28597736512apply_filters( ).../post-template.php:256
110.28597736912WP_Hook->apply_filters( ).../plugin.php:205
120.28767742440do_shortcode( ).../class-wp-hook.php:310
130.28777748496preg_replace_callback ( ).../shortcodes.php:273
141.32857757416do_shortcode_tag( ).../shortcodes.php:273
151.32867757888bicluster_genes_shortcode( ).../shortcodes.php:433
161.32877758392file_get_contents ( ).../short_codes.php:15
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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16177193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16667197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28437718072get_template_part( ).../page.php:28
60.28437718648locate_template( ).../general-template.php:206
70.28437718776load_template( ).../template.php:720
80.28437719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28577736264the_content( ).../content-page.php:22
100.28597736512apply_filters( ).../post-template.php:256
110.28597736912WP_Hook->apply_filters( ).../plugin.php:205
120.28767742440do_shortcode( ).../class-wp-hook.php:310
130.28777748496preg_replace_callback ( ).../shortcodes.php:273
141.32857757416do_shortcode_tag( ).../shortcodes.php:273
151.32867757888bicluster_genes_shortcode( ).../shortcodes.php:433
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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16177193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16667197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28437718072get_template_part( ).../page.php:28
60.28437718648locate_template( ).../general-template.php:206
70.28437718776load_template( ).../template.php:720
80.28437719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28577736264the_content( ).../content-page.php:22
100.28597736512apply_filters( ).../post-template.php:256
110.28597736912WP_Hook->apply_filters( ).../plugin.php:205
120.28767742440do_shortcode( ).../class-wp-hook.php:310
130.28777748496preg_replace_callback ( ).../shortcodes.php:273
141.32857757416do_shortcode_tag( ).../shortcodes.php:273
151.32867757888bicluster_genes_shortcode( ).../shortcodes.php:433
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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16177193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16667197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28437718072get_template_part( ).../page.php:28
60.28437718648locate_template( ).../general-template.php:206
70.28437718776load_template( ).../template.php:720
80.28437719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28577736264the_content( ).../content-page.php:22
100.28597736512apply_filters( ).../post-template.php:256
110.28597736912WP_Hook->apply_filters( ).../plugin.php:205
120.28767742440do_shortcode( ).../class-wp-hook.php:310
130.28777748496preg_replace_callback ( ).../shortcodes.php:273
141.32857757416do_shortcode_tag( ).../shortcodes.php:273
151.32867757888bicluster_genes_shortcode( ).../shortcodes.php:433
ID: 552f7bb7b744335b89d717c3
# Conditions: 115
# Genes: 21
Residual: 0.47456823842886

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • Strain.CDC1551..replicate.1
    • Strain.CDC1551..replicate.2
    • Strain.CDC1551..replicate.3
    • Strain.1006...replicate.1
    • Strain.1254...replicate.4
    • Strain.1254...replicate.2
    • Strain.1254...replicate.3
    • Strain.1843..replicate.1
    • Strain.3160...replicate.3
    • Strain.9700665..replicate.1
    • Strain.9700665..replicate.3
    • Strain.9700665..replicate.4
    • Strain.9800608..replicate.1
    • Strain.9800608..replicate.2
    • Strain.9800608...replicate.3
    • Strain.9800608..replicate.4
    • Strain.9802501..replicate.2
    • Strain.9802501..replicate.3
    • Strain.9802501..replicate.4
    • Strain.9802826..replicate.1
    • Strain.9802826..replicate.2
    • Strain.9802826..replicate.4
    • Strain.M3061a..replicate.1
    • Strain.M3061a..replicate.2
    • Strain.M3061a..replicate.3
    • Strain.M3061a..replicate.4
    • H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
    • H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
    • H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
    • Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
    • Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
    • Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
    • Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
    • Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
    • Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
    • Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
    • Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
    • Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
    • Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3
    • Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
    • Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.2
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
    • CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.3
    • Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
    • H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
    • H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
    • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
    • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.1
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.2
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.4
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.2
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.3
    • Mtb.Erdman.strain.200.ppm.CO.rep.1
    • Mtb.Erdman.strain.200.ppm.CO.rep.2
    • Mtb.Erdman.strain.2000.ppm.CO.rep.1
    • Mtb.Erdman.strain.2000.ppm.CO.rep.2
    • MTB.in.Wild.type.macrophages.for.24hrs
    • MTB.in.Wild.type.macrophages.for.48hrs
    • MTB.in.Wild.type.macrophages...IFNg.for.4hrs
    • Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
    • Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
    • Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
    • Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
    • Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
    • Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
    • Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
    • hip.mutant.KL2801..biological.rep1
    • hip.mutant.KL2825..biological.rep1
    • hip.mutant.HTS1105..biological.rep1
    • hip.mutant.HTS1105..biological.rep2
    • hip.mutant.HT1120..biological.rep1
    • hip.mutant.HT1120..biological.rep2
    • hip.mutant.HT1130..biological.rep1
    • hip.mutant.HT1137..biological.rep2
    • hip.mutant.HT1170..biological.rep2