Bicluster – MTB EGRIN 2.0

( ! ) Warning: file_get_contents(https://mtb-egrin2.systemsbiology.net/api/api/v1.0.0/bicluster_pssms/552f8467b744335b89d744c2): failed to open stream: HTTP request failed! HTTP/1.1 500 Internal Server Error in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 74
Call Stack
#	Time	Memory	Function	Location
1	0.0000	399816	{main}( )	.../index.php:0
2	0.0001	400096	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1593	7195440	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1632	7199184	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2550	7736328	get_template_part( )	.../page.php:28
6	0.2550	7736904	locate_template( )	.../general-template.php:206
7	0.2550	7737032	load_template( )	.../template.php:720
8	0.2551	7737344	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2565	7738136	the_content( )	.../content-page.php:22
10	0.2569	7738384	apply_filters( )	.../post-template.php:256
11	0.2569	7738784	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2586	7744312	do_shortcode( )	.../class-wp-hook.php:310
13	0.2588	7750368	preg_replace_callback ( )	.../shortcodes.php:273
14	1.4542	7751328	do_shortcode_tag( )	.../shortcodes.php:273
15	1.4542	7751328	bicluster_motifs_shortcode( )	.../shortcodes.php:433
16	1.4544	7751456	file_get_contents ( )	.../short_codes.php:74

ID: 552f8467b744335b89d744c2
# Conditions: 179
# Genes: 18
Residual: 0.44105188746893

Bicluster Motifs

Bicluster Genes

Rv0099
Rv0130
Rv0132c
Rv0152c
Rv0194
Rv0213c
Rv0278c
Rv0319
Rv0329c
Rv0359
Rv0388c
Rv0851c
Rv1188
Rv1380
Rv1949c
Rv2089c
Rv2491
Rv3453

Bicluster Conditions

H37Rv.0.05..SDS.exposure.for.1h.rep.4
H37Rv.0.05..SDS.exposure.for.1h.rep.5
H37Rv.0.05..SDS.exposure.for.1h.rep.6
MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.3.x
MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.6.x
MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.7.x
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.2
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.3
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.2.x
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3.x
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.4
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.2
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.1
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.2
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.3
MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.1.x
MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.1.x
MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.2.x
MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.3.x
MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.4.x
H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4
CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.2
CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.3
CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.4
MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.1
MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.3
MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.5
H37Rv.vs..H37Rv.SDS.treated.rep.1
H37Rv.vs..H37Rv.SDS.treated.rep.2
H37Rv.vs..H37Rv.SDS.treated.rep.3
H37Rv.vs..H37Rv.SDS.treated.rep.4
H37Rv.vs..H37Rv.SDS.treated.rep.5
H37Rv.vs..H37Rv.SDS.treated.rep.6
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.1
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.2
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.3
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.4
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.6
X0.1mM.GSNOvsDMSO..4h
X0.1mM.GSNO.DMSO..6h
X0.1mM.GSNOvsDMSO..6h.
X0.1mM.GSNOvsDMSO..6h.A
X4mM.H2O2vsctrl..2h.
X4mM.H2O2vsctrl..2h.A
X4mM.H2O2.ctrl..2h...1
X4mM.H2O2.ctrl..2h...2
X4mM.H2O2vsctrl..4h.
X4mM.H2O2vsctrl..4h.A
H2O2.4mM.vs.ctrl.8h.1
H37Rv.diamide.1h.rep.1
H37Rv.diamide.1h.rep.2
H37Rv.diamide.1h.rep.5
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.4
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.5
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.6
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.3
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.5
Whole.Lung.Surfactant.2hrs.rep.2
Extracted.Lung.Surfactant.2hrs.rep.1
Extracted.Lung.Surfactant.30min.rep.2
Purified.Surfactant.Lipids.2hrs.rep.1
Purified.Surfactant.Lipids.30min.rep.1
Purified.Surfactant.Lipids.30min.rep.2
Purified.Human.SP.A.Coated.2hrs.rep1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
CHP_25uM_1h_01
CHP_25uM_2h_01
MTB1254_SDS_90MIN_01
MTB1254_SDS_90MIN_02
MTB1254_SDS_90MIN_03
MTB1254_SDS_90MIN_04
SDS_60min_01
H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.2
H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3
H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
H37Rv.reaeration.for.1hrs.rep.2
H37Rv.reaeration.for.1hrs.rep.3
H37Rv.reaeration.for.1hrs.rep.5
H37Rv.reaeration.for.1hrs.rep.6
H37Rv.reaeration.for.1hrs.rep.8
H37Rv.reaeration.for.4hrs.rep.1
H37Rv.reaeration.for.4hrs.rep.2
H37Rv.reaeration.for.4hrs.rep.3
H37Rv.reaeration.for.6hrs.rep.5
H37Rv.reaeration.for.12hrs.rep.1
H37Rv.reaeration.for.12hrs.rep.2
H37Rv.reaeration.for.12hrs.rep.5
H37Rv.reaeration.for.24hrs.rep.2
H37Rv.reaeration.for.24hrs.rep.5
H37Rv.reaeration.for.24hrs.rep.6
MTB.in.Wild.type.macrophages.for.4hrs
MTB.in.Wild.type.macrophages.for.24hrs
MTB.in.Wild.type.macrophages.for.48hrs
MTB.in.Wild.type.macrophages...IFNg.for.4hrs
MTB.in.Wild.type.macrophages...IFNg.for.24hrs
MTB.in.Wild.type.macrophages...IFNg.for.48hrs
MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.1.y
MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.2
MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4
MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.6.y
MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.7.y
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.7
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.3.y
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.1
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.2
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
MTB.strain1254.vs.MTB.strain.1254.for.DETA.NO.exp.control.rep.2
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.2
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.3
Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
A00470_Q1_t30_diamide
A00437_Q1_t30_diamide
A00437_Q2_t60_diamide
A00437_Q3_t90_diamide
A00436_Q1_t30_diamide
A00436_Q2_t60_diamide
A00436_Q3_t90_diamide

Column members cluster 552f8467b744335b89d744c2 Species (TODO)

H37Rv.0.05..SDS.exposure.for.1h.rep.4
H37Rv.0.05..SDS.exposure.for.1h.rep.5
H37Rv.0.05..SDS.exposure.for.1h.rep.6
MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.3.x
MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.6.x
MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.7.x
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.2
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.3
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.2.x
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3.x
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.4
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.2
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.1
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.2
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.3
MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.1.x
MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.1.x
MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.2.x
MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.3.x
MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.4.x
H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4
CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.2
CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.3
CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.4
MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.1
MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.3
MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.5
H37Rv.vs..H37Rv.SDS.treated.rep.1
H37Rv.vs..H37Rv.SDS.treated.rep.2
H37Rv.vs..H37Rv.SDS.treated.rep.3
H37Rv.vs..H37Rv.SDS.treated.rep.4
H37Rv.vs..H37Rv.SDS.treated.rep.5
H37Rv.vs..H37Rv.SDS.treated.rep.6
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.1
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.2
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.3
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.4
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.6
X0.1mM.GSNOvsDMSO..4h
X0.1mM.GSNO.DMSO..6h
X0.1mM.GSNOvsDMSO..6h.
X0.1mM.GSNOvsDMSO..6h.A
X4mM.H2O2vsctrl..2h.
X4mM.H2O2vsctrl..2h.A
X4mM.H2O2.ctrl..2h...1
X4mM.H2O2.ctrl..2h...2
X4mM.H2O2vsctrl..4h.
X4mM.H2O2vsctrl..4h.A
H2O2.4mM.vs.ctrl.8h.1
H37Rv.diamide.1h.rep.1
H37Rv.diamide.1h.rep.2
H37Rv.diamide.1h.rep.5
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.4
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.5
H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.6
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.3
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.5
Whole.Lung.Surfactant.2hrs.rep.2
Extracted.Lung.Surfactant.2hrs.rep.1
Extracted.Lung.Surfactant.30min.rep.2
Purified.Surfactant.Lipids.2hrs.rep.1
Purified.Surfactant.Lipids.30min.rep.1
Purified.Surfactant.Lipids.30min.rep.2
Purified.Human.SP.A.Coated.2hrs.rep1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
CHP_25uM_1h_01
CHP_25uM_2h_01
MTB1254_SDS_90MIN_01
MTB1254_SDS_90MIN_02
MTB1254_SDS_90MIN_03
MTB1254_SDS_90MIN_04
SDS_60min_01
H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.2
H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3
H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
H37Rv.reaeration.for.1hrs.rep.2
H37Rv.reaeration.for.1hrs.rep.3
H37Rv.reaeration.for.1hrs.rep.5
H37Rv.reaeration.for.1hrs.rep.6
H37Rv.reaeration.for.1hrs.rep.8
H37Rv.reaeration.for.4hrs.rep.1
H37Rv.reaeration.for.4hrs.rep.2
H37Rv.reaeration.for.4hrs.rep.3
H37Rv.reaeration.for.6hrs.rep.5
H37Rv.reaeration.for.12hrs.rep.1
H37Rv.reaeration.for.12hrs.rep.2
H37Rv.reaeration.for.12hrs.rep.5
H37Rv.reaeration.for.24hrs.rep.2
H37Rv.reaeration.for.24hrs.rep.5
H37Rv.reaeration.for.24hrs.rep.6
MTB.in.Wild.type.macrophages.for.4hrs
MTB.in.Wild.type.macrophages.for.24hrs
MTB.in.Wild.type.macrophages.for.48hrs
MTB.in.Wild.type.macrophages...IFNg.for.4hrs
MTB.in.Wild.type.macrophages...IFNg.for.24hrs
MTB.in.Wild.type.macrophages...IFNg.for.48hrs
MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.1.y
MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.2
MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4
MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.6.y
MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.7.y
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.7
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.3.y
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.1
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.2
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
MTB.strain1254.vs.MTB.strain.1254.for.DETA.NO.exp.control.rep.2
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.2
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.3
Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
A00470_Q1_t30_diamide
A00437_Q1_t30_diamide
A00437_Q2_t60_diamide
A00437_Q3_t90_diamide
A00436_Q1_t30_diamide
A00436_Q2_t60_diamide
A00436_Q3_t90_diamide