Bicluster


( ! ) Warning: file_get_contents(https://mtb-egrin2.systemsbiology.net/api/api/v1.0.0/bicluster_genes/552f92bab744335b89d79086): failed to open stream: HTTP request failed! HTTP/1.1 500 Internal Server Error in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 15
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19327193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19837197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.31527718072get_template_part( ).../page.php:28
60.31527718648locate_template( ).../general-template.php:206
70.31527718776load_template( ).../template.php:720
80.31537719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.31617736264the_content( ).../content-page.php:22
100.31637736512apply_filters( ).../post-template.php:256
110.31637736912WP_Hook->apply_filters( ).../plugin.php:205
120.31757742440do_shortcode( ).../class-wp-hook.php:310
130.31767748496preg_replace_callback ( ).../shortcodes.php:273
142.33437757416do_shortcode_tag( ).../shortcodes.php:273
152.33437757888bicluster_genes_shortcode( ).../shortcodes.php:433
162.33457758392file_get_contents ( ).../short_codes.php:15
( ! ) Notice: Trying to get property 'genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 16
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19327193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19837197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.31527718072get_template_part( ).../page.php:28
60.31527718648locate_template( ).../general-template.php:206
70.31527718776load_template( ).../template.php:720
80.31537719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.31617736264the_content( ).../content-page.php:22
100.31637736512apply_filters( ).../post-template.php:256
110.31637736912WP_Hook->apply_filters( ).../plugin.php:205
120.31757742440do_shortcode( ).../class-wp-hook.php:310
130.31767748496preg_replace_callback ( ).../shortcodes.php:273
142.33437757416do_shortcode_tag( ).../shortcodes.php:273
152.33437757888bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 18
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19327193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19837197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.31527718072get_template_part( ).../page.php:28
60.31527718648locate_template( ).../general-template.php:206
70.31527718776load_template( ).../template.php:720
80.31537719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.31617736264the_content( ).../content-page.php:22
100.31637736512apply_filters( ).../post-template.php:256
110.31637736912WP_Hook->apply_filters( ).../plugin.php:205
120.31757742440do_shortcode( ).../class-wp-hook.php:310
130.31767748496preg_replace_callback ( ).../shortcodes.php:273
142.33437757416do_shortcode_tag( ).../shortcodes.php:273
152.33437757888bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 29
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19327193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19837197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.31527718072get_template_part( ).../page.php:28
60.31527718648locate_template( ).../general-template.php:206
70.31527718776load_template( ).../template.php:720
80.31537719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.31617736264the_content( ).../content-page.php:22
100.31637736512apply_filters( ).../post-template.php:256
110.31637736912WP_Hook->apply_filters( ).../plugin.php:205
120.31757742440do_shortcode( ).../class-wp-hook.php:310
130.31767748496preg_replace_callback ( ).../shortcodes.php:273
142.33437757416do_shortcode_tag( ).../shortcodes.php:273
152.33437757888bicluster_genes_shortcode( ).../shortcodes.php:433
ID: 552f92bab744335b89d79086
# Conditions: 249
# Genes: 18
Residual: 0.51221442686418

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.1.x
    • MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.2.x
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3.x
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.5.x
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.6.x
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.7.x
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.3
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.1.x
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.3
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.3
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.4
    • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.1.x
    • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.4.x
    • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.1.x
    • H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.2
    • H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3
    • CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.4
    • MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1
    • MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
    • H37Rv.hypoxia.2hr.rep.2
    • H37Rv.hypoxia.2hr.rep.6
    • NRP.Day8..2
    • NRP.Day8..3
    • NRP.Day14..8
    • NRP.Day14..9
    • X0.1mM.GSNO.DMSO..3.5h
    • X0.1mM.GSNOvsDMSO..4h
    • X0.1mM.GSNO.DMSO..6h
    • X0.1mM.GSNOvsDMSO..6h.
    • X0.1mM.GSNOvsDMSO..6h.A
    • X4mM.H2O2vsctrl..2h.A
    • X4mM.H2O2.ctrl..2h...1
    • X4mM.H2O2.ctrl..2h...2
    • X4mM.H2O2.ctrl..4h...2
    • X4mM.H2O2vsctrl..4h.
    • H2O2.4mM.vs.ctrl.12h.1
    • UV.20J.vs.ctrl.8h.1
    • UV.40J.vs.ctrl.8h.1
    • X60J.UVvsctrl..6h.
    • H37Rv.hypoxia.4hr.rep.4
    • H37Rv.hypoxia.1.day.rep.2
    • H37Rv.hypoxia.1.day.rep.4
    • H37Rv.hypoxia.1.day.rep.5
    • H37Rv.hypoxia.1.day.rep.6
    • H37Rv.hypoxia.7.day.rep.5
    • H37Rv.diamide.1h.rep.3
    • H37Rv.diamide.1h.rep.5
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.3
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
    • CHP_25uM_24h_01
    • CHP_25uM_2h_01
    • Starvation_1254_12h_04
    • Starvation_1254_24h_01
    • Starvation_1254_3d_01
    • Starvation_1254_3d_04
    • Starvation_1254_5d_02
    • Starvation_1254_5d_04
    • H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.2
    • H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3
    • H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.1
    • H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2
    • MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.1.y
    • MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.3.y
    • MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.4.y
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.1.y
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3.y
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.5.y
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.7.y
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.1.y
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.4.y
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.4hrs.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.4hrs.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.4hrs.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.1.y
    • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.2.y
    • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.3.y
    • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.4.y
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.1
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.6
    • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.6
    • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.2.y
    • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.4.y
    • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.1.y
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.1
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.1
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.2
    • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
    • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.5
    • SG2.A0_N02A01c3
    • SG2.B0_N02A09c3
    • SG2.D0_N02A01c5
    • SG6.G0_N5A02cy.5
    • SG6.H0_N5A03cy.5
    • SG7.AT0_N11A01cy.5
    • SG7.BT0_N11A02cy.5
    • SG7.DT0_N11A04cy.5
    • SG8.A.Day.0.pre_fix_N37A04cy.5
    • SG8.B.Day.0.pre_N37A12cy.3
    • SG8.C.Day.0.post_N27A08cy.3
    • SG8.C.Day.0.pre_N27A07cy.3
    • SG8.D.Day.0.pre_N27A10cy.3
    • SG8.C.Day.0.post_N37A10cy.5
    • SG8.D.Day.0.post_N27A11cy.3
    • SG.ISB.3.0A_N30A01cy.3
    • SG.ISB.3.0C_N30A02cy.3
    • SG8.C.Day.1_N27A09cy.3
    • SG8.D.Day.1_N27A12cy.3
    • SG8.A.Day.1_fix_N37A03cy.5
    • SG7.DT1_N11A08cy.5
    • SG7.CT1_N11A07cy.5
    • SG6_B1_N7A11cy.5
    • SG6_A1_N7A11cy.3
    • SG6.D1_N5A05cy.5
    • SG2.D1_N02A02c5
    • SG2.B1_N02A10c3
    • SG2.A2_N02A03c3
    • SG2.B2_N02A11c3
    • SG2.D2_N02A03c5
    • SG8.A.Day.3_N37A09cy.3
    • SG8.B.Day.3_N37A07cy.5
    • SG2.A3_N02A04c3
    • SG2.B3_N02A12c3
    • SG2.D3_N02A04c5
    • SG8.A.Day.5_N37A10cy.3
    • SG8.B.Day.5_N37A08cy.5
    • SG2.A5_N02A05c3
    • SG2.B5_N02A09c5
    • SG2.D5_N02A05c5
    • SG2.D7_N02A06c5
    • SG2.B7_N02A10c5
    • SG2.A7_N02A06c3
    • SG6C.T7_N11A01cy.3
    • SG6_B7_N7A12cy.5
    • SG6_A7_N7A12cy.3
    • SG7.T7B_N11A09cy.5
    • SG7.T7C_N11A10cy.5
    • SG7.T7D_N11A11cy.5
    • SG8.B.Day.7_N37A09cy.5
    • SG8.A.Day.7_N37A11cy.3
    • SG.ISB.3.7A_N30A02cy.5
    • SG.ISB.3.7B_N30A03cy.3
    • SG.ISB.3.7C_N30A03cy.5
    • SG.ISB.3.7D_N30A04cy.3
    • SG12.B0_N32A09cy.3
    • SG12.A0_N32A01cy.3
    • SG12.B1_N32A10cy.3
    • SG12.C1_N32A06cy.5
    • SG12.B2_N32A11cy.3
    • SG12.C2_N32A07cy.5
    • SG12.B4_N32A12cy.3
    • SG12.C4_N32A08cy.5
    • SG12.B6_N32A01cy.5
    • SG12.C6_N32A09cy.5
    • SG12.B8_N32A02cy.5
    • SG2.A8_N02A07c3
    • SG2.B8_N02A11c5
    • SG2.D8_N02A07c5
    • SG6D.T8_N11A03cy.3
    • SG6.C8_N5A08cy.5
    • SG6.B8_N5A07cy.5
    • SG6.A8_N5A06cy.5
    • SG7.T8C_N11A07cy.3
    • SG7.T8B_N11A06cy.3
    • SG7.T8A_N11A05cy.3
    • SG7.T8D_N11A08cy.3
    • SG.ISB.3.8B_N30A05cy.3
    • SG.ISB.3.8D_N30A06cy.3
    • SG2.A9_N02A08c3
    • SG2.B9_N02A12c5
    • SG2.D9_N02A08c5
    • SG6.C11_N5A12cy.5
    • SG6.B11_N5A11cy.5
    • SG6.A11_N5A10cy.5
    • SG7.T12D_N11A12cy.3
    • SG7.T12C_N11A11cy.3
    • SG7.T12A_N11A09cy.3
    • SG12.C120_N32A12cy.5
    • SG12.B120_N32A04cy.5
    • SG12.A120_N32A08cy.3
    • SG.ISB.3.12A_N30A06cy.5
    • SG.ISB.3.12B_N30A07cy.3
    • SG.ISB.3.12C_N30A07cy.5
    • SG.ISB.3.12D_N30A08cy.3
    • SG6D.T14_N11A04cy.3
    • A00470_Q1_t30_diamide
    • A00470_Q2_t60_diamide
    • A00437_Q1_t30_diamide
    • A00437_Q2_t60_diamide
    • A00437_Q3_t90_diamide
    • A00436_Q1_t30_diamide
    • X20ug.mL.Prcp.6776.DMSO..6h..1
    • X20ug.mL.Procept.6776vsDMSO..6h
    • X30ug.mLProcept6776vsDMSO.6h
    • X5ug.mLProcept.6778vsDMSO.6h
    • X5ug.mLProcept.6778vsDMSO.6hA
    • X20ug.mL.Prcp.6778.DMSO..6h..2
    • X20ug.mLProcept6778vsDMSO.6h
    • X40ug.mLProcept6778vsDMSO.6h
    • X40ug.mLProcept6778vsDMSO.6hA
    • X10ug.mL.PA.1vsDMSO..6hA
    • X50ug.mL.PA.21vsDMSO..6hA
    • X0.2ug.mL.PA824.DMSO..6h..1
    • X0.2ug.mL.PA824.DMSO..6h..2
    • X0.4ug.mL.PA824.DMSO..6h..2
    • X2ug.mL.PA824.DMSO..6h..2
    • X12.5ug.mL.AntimycinvsDMSO..6h
    • X25ug.mL.AntimycinvsDMSO..6h
    • X50ug.mLAntimycinAvsDMSO..6hB
    • X2mM.DTNBvsDMSO
    • X10ug.mL.methoxatinvsDMSO..6h.A
    • X20ug.mL.methoxatinvsDMSO..6h
    • X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.1
    • X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
    • X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.1
    • X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.3
    • X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.4
    • X2ug.ml.PA.824.vs.DMSO.6hrs.rep.1.x
    • X2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
    • X2ug.ml.PA.824.vs.DMSO.6hrs.rep.1.y
    • MTB.at.T0..biological.rep2
    • MTB.at.T0..biological.rep3
    • MTB.at.T180..biological.rep1
    • MTB.at.T180..biological.rep3
    • MTB.at.T180..biological.rep4
    • MTB.at.T360..biological.rep2
    • MTB.at.T360..biological.rep3
    • MTB.at.T360..biological.rep4