Bicluster – MTB EGRIN 2.0

( ! ) Warning: file_get_contents(https://mtb-egrin2.systemsbiology.net/api/api/v1.0.0/bicluster_genes/552f9f7fb744335b89d7d786): failed to open stream: HTTP request failed! HTTP/1.1 500 Internal Server Error in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 15
Call Stack
#	Time	Memory	Function	Location
1	0.0001	398656	{main}( )	.../index.php:0
2	0.0001	398936	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1619	7193568	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1672	7197312	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2579	7718072	get_template_part( )	.../page.php:28
6	0.2579	7718648	locate_template( )	.../general-template.php:206
7	0.2579	7718776	load_template( )	.../template.php:720
8	0.2580	7719088	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2589	7736264	the_content( )	.../content-page.php:22
10	0.2590	7736512	apply_filters( )	.../post-template.php:256
11	0.2590	7736912	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2601	7742440	do_shortcode( )	.../class-wp-hook.php:310
13	0.2602	7748496	preg_replace_callback ( )	.../shortcodes.php:273
14	3.1934	7757416	do_shortcode_tag( )	.../shortcodes.php:273
15	3.1934	7757888	bicluster_genes_shortcode( )	.../shortcodes.php:433
16	3.1935	7758392	file_get_contents ( )	.../short_codes.php:15

( ! ) Notice: Trying to get property 'genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 16
Call Stack
#	Time	Memory	Function	Location
1	0.0001	398656	{main}( )	.../index.php:0
2	0.0001	398936	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1619	7193568	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1672	7197312	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2579	7718072	get_template_part( )	.../page.php:28
6	0.2579	7718648	locate_template( )	.../general-template.php:206
7	0.2579	7718776	load_template( )	.../template.php:720
8	0.2580	7719088	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2589	7736264	the_content( )	.../content-page.php:22
10	0.2590	7736512	apply_filters( )	.../post-template.php:256
11	0.2590	7736912	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2601	7742440	do_shortcode( )	.../class-wp-hook.php:310
13	0.2602	7748496	preg_replace_callback ( )	.../shortcodes.php:273
14	3.1934	7757416	do_shortcode_tag( )	.../shortcodes.php:273
15	3.1934	7757888	bicluster_genes_shortcode( )	.../shortcodes.php:433

( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 18
Call Stack
#	Time	Memory	Function	Location
1	0.0001	398656	{main}( )	.../index.php:0
2	0.0001	398936	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1619	7193568	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1672	7197312	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2579	7718072	get_template_part( )	.../page.php:28
6	0.2579	7718648	locate_template( )	.../general-template.php:206
7	0.2579	7718776	load_template( )	.../template.php:720
8	0.2580	7719088	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2589	7736264	the_content( )	.../content-page.php:22
10	0.2590	7736512	apply_filters( )	.../post-template.php:256
11	0.2590	7736912	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2601	7742440	do_shortcode( )	.../class-wp-hook.php:310
13	0.2602	7748496	preg_replace_callback ( )	.../shortcodes.php:273
14	3.1934	7757416	do_shortcode_tag( )	.../shortcodes.php:273
15	3.1934	7757888	bicluster_genes_shortcode( )	.../shortcodes.php:433

( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 29
Call Stack
#	Time	Memory	Function	Location
1	0.0001	398656	{main}( )	.../index.php:0
2	0.0001	398936	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1619	7193568	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1672	7197312	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2579	7718072	get_template_part( )	.../page.php:28
6	0.2579	7718648	locate_template( )	.../general-template.php:206
7	0.2579	7718776	load_template( )	.../template.php:720
8	0.2580	7719088	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2589	7736264	the_content( )	.../content-page.php:22
10	0.2590	7736512	apply_filters( )	.../post-template.php:256
11	0.2590	7736912	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2601	7742440	do_shortcode( )	.../class-wp-hook.php:310
13	0.2602	7748496	preg_replace_callback ( )	.../shortcodes.php:273
14	3.1934	7757416	do_shortcode_tag( )	.../shortcodes.php:273
15	3.1934	7757888	bicluster_genes_shortcode( )	.../shortcodes.php:433

ID: 552f9f7fb744335b89d7d786
# Conditions: 98
# Genes: 15
Residual: 0.39591622277735

Bicluster Motifs

Bicluster Genes

Bicluster Conditions

MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
H37Rv.hypoxia.2hr.rep.1
H37Rv.hypoxia.2hr.rep.3
H37Rv.hypoxia.2hr.rep.4
H37Rv.hypoxia.2hr.rep.5
H37Rv.hypoxia.2hr.rep.6
NRP.Day6..1
NRP.Day6..3
NRP.Day8..2
NRP.Day8..3
NRP.Day10..1
NRP.Day10..2
NRP.Day12..1
NRP.Day12..3
NRP.Day14..1
NRP.Day14..2
NRP.Day14..4
NRP.Day14..6
NRP.Day14..7
NRP.Day20..2
NRP.Day30..1
H37Rv.hypoxia.4hr.rep.2
H37Rv.hypoxia.4hr.rep.3
H37Rv.hypoxia.4hr.rep.4
H37Rv.hypoxia.4hr.rep.5
H37Rv.hypoxia.8hr.rep.1
H37Rv.hypoxia.8hr.rep.2
H37Rv.hypoxia.12hr.rep.1
H37Rv.hypoxia.12hr.rep.2
H37Rv.hypoxia.12hr.rep.3
H37Rv.hypoxia.1.day.rep.2
H37Rv.hypoxia.1.day.rep.4
H37Rv.hypoxia.1.day.rep.5
H37Rv.hypoxia.1.day.rep.10
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.4.day.rep.4
H37Rv.hypoxia.4.day.rep.5
H37Rv.hypoxia.4.day.rep.6
H37Rv.hypoxia.7.day.rep.3
H37Rv.hypoxia.7.day.rep.4
SG2.A0_N02A01c3
SG2.D0_N02A01c5
SG6.G0_N5A02cy.5
SG6.H0_N5A03cy.5
SG6_B0_N7A10cy.5
SG7.BT0_N11A02cy.5
SG7.CT0_N11A03cy.5
SG8.A.Day.0.pre_fix_N37A04cy.5
SG8.B.Day.0.pre_N37A12cy.3
SG8.C.Day.0.post_N27A08cy.3
SG8.C.Day.0.pre_N27A07cy.3
SG8.D.Day.0.pre_N27A10cy.3
SG8.C.Day.0.post_N37A10cy.5
SG8.D.Day.0.post_N27A11cy.3
SG8.C.Day.1_N37A11cy.5
SG8.C.Day.1_N27A09cy.3
SG8.B.Day.1_N37A05cy.5
SG8.A.Day.1_fix_N37A03cy.5
SG7.DT1_N11A08cy.5
SG7.BT1_N11A06cy.5
SG7.AT1_N11A05cy.5
SG6_B1_N7A11cy.5
SG6_A1_N7A11cy.3
SG8.C.Day.2_N37A12cy.5
SG2.A2_N02A03c3
SG2.B2_N02A11c3
SG8.B.Day.3_N37A07cy.5
SG.ISB.3.7B_N30A03cy.3
SG12.B0_N32A09cy.3
SG12.A1_N32A02cy.3
SG12.B1_N32A10cy.3
SG12.C1_N32A06cy.5
SG12.A2_N32A03cy.3
SG12.B2_N32A11cy.3
SG12.C2_N32A07cy.5
SG12.B4_N32A12cy.3
SG12.C4_N32A08cy.5
SG12.A6_N32A05cy.3
SG12.C6_N32A09cy.5
SG12.C8_N32A10cy.5
SG2.B8_N02A11c5
SG6.B8_N5A07cy.5
SG6.A8_N5A06cy.5
SG7.T8C_N11A07cy.3
SG7.T8A_N11A05cy.3
SG2.D9_N02A08c5
SG6.C11_N5A12cy.5
SG6.B11_N5A11cy.5
SG6.A11_N5A10cy.5
SG7.T12D_N11A12cy.3
SG7.T12B_N11A10cy.3
SG12.C120_N32A12cy.5
SG12.A120_N32A08cy.3
SG.ISB.3.12B_N30A07cy.3
SG.ISB.3.12D_N30A08cy.3
SG6.B14_N8A11cy.5
SG6D.T14_N11A04cy.3

Column members cluster 552f9f7fb744335b89d7d786 Species (TODO)

MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
H37Rv.hypoxia.2hr.rep.1
H37Rv.hypoxia.2hr.rep.3
H37Rv.hypoxia.2hr.rep.4
H37Rv.hypoxia.2hr.rep.5
H37Rv.hypoxia.2hr.rep.6
NRP.Day6..1
NRP.Day6..3
NRP.Day8..2
NRP.Day8..3
NRP.Day10..1
NRP.Day10..2
NRP.Day12..1
NRP.Day12..3
NRP.Day14..1
NRP.Day14..2
NRP.Day14..4
NRP.Day14..6
NRP.Day14..7
NRP.Day20..2
NRP.Day30..1
H37Rv.hypoxia.4hr.rep.2
H37Rv.hypoxia.4hr.rep.3
H37Rv.hypoxia.4hr.rep.4
H37Rv.hypoxia.4hr.rep.5
H37Rv.hypoxia.8hr.rep.1
H37Rv.hypoxia.8hr.rep.2
H37Rv.hypoxia.12hr.rep.1
H37Rv.hypoxia.12hr.rep.2
H37Rv.hypoxia.12hr.rep.3
H37Rv.hypoxia.1.day.rep.2
H37Rv.hypoxia.1.day.rep.4
H37Rv.hypoxia.1.day.rep.5
H37Rv.hypoxia.1.day.rep.10
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.4.day.rep.4
H37Rv.hypoxia.4.day.rep.5
H37Rv.hypoxia.4.day.rep.6
H37Rv.hypoxia.7.day.rep.3
H37Rv.hypoxia.7.day.rep.4
SG2.A0_N02A01c3
SG2.D0_N02A01c5
SG6.G0_N5A02cy.5
SG6.H0_N5A03cy.5
SG6_B0_N7A10cy.5
SG7.BT0_N11A02cy.5
SG7.CT0_N11A03cy.5
SG8.A.Day.0.pre_fix_N37A04cy.5
SG8.B.Day.0.pre_N37A12cy.3
SG8.C.Day.0.post_N27A08cy.3
SG8.C.Day.0.pre_N27A07cy.3
SG8.D.Day.0.pre_N27A10cy.3
SG8.C.Day.0.post_N37A10cy.5
SG8.D.Day.0.post_N27A11cy.3
SG8.C.Day.1_N37A11cy.5
SG8.C.Day.1_N27A09cy.3
SG8.B.Day.1_N37A05cy.5
SG8.A.Day.1_fix_N37A03cy.5
SG7.DT1_N11A08cy.5
SG7.BT1_N11A06cy.5
SG7.AT1_N11A05cy.5
SG6_B1_N7A11cy.5
SG6_A1_N7A11cy.3
SG8.C.Day.2_N37A12cy.5
SG2.A2_N02A03c3
SG2.B2_N02A11c3
SG8.B.Day.3_N37A07cy.5
SG.ISB.3.7B_N30A03cy.3
SG12.B0_N32A09cy.3
SG12.A1_N32A02cy.3
SG12.B1_N32A10cy.3
SG12.C1_N32A06cy.5
SG12.A2_N32A03cy.3
SG12.B2_N32A11cy.3
SG12.C2_N32A07cy.5
SG12.B4_N32A12cy.3
SG12.C4_N32A08cy.5
SG12.A6_N32A05cy.3
SG12.C6_N32A09cy.5
SG12.C8_N32A10cy.5
SG2.B8_N02A11c5
SG6.B8_N5A07cy.5
SG6.A8_N5A06cy.5
SG7.T8C_N11A07cy.3
SG7.T8A_N11A05cy.3
SG2.D9_N02A08c5
SG6.C11_N5A12cy.5
SG6.B11_N5A11cy.5
SG6.A11_N5A10cy.5
SG7.T12D_N11A12cy.3
SG7.T12B_N11A10cy.3
SG12.C120_N32A12cy.5
SG12.A120_N32A08cy.3
SG.ISB.3.12B_N30A07cy.3
SG.ISB.3.12D_N30A08cy.3
SG6.B14_N8A11cy.5
SG6D.T14_N11A04cy.3