Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19677193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.20087197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28727718072get_template_part( ).../page.php:28
60.28727718648locate_template( ).../general-template.php:206
70.28727718776load_template( ).../template.php:720
80.28737719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28837736264the_content( ).../content-page.php:22
100.28867736512apply_filters( ).../post-template.php:256
110.28867736912WP_Hook->apply_filters( ).../plugin.php:205
120.28997742440do_shortcode( ).../class-wp-hook.php:310
130.29007748496preg_replace_callback ( ).../shortcodes.php:273
142.58017757416do_shortcode_tag( ).../shortcodes.php:273
152.58017757888bicluster_genes_shortcode( ).../shortcodes.php:433
162.58027758392file_get_contents ( ).../short_codes.php:15
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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19677193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.20087197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28727718072get_template_part( ).../page.php:28
60.28727718648locate_template( ).../general-template.php:206
70.28727718776load_template( ).../template.php:720
80.28737719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28837736264the_content( ).../content-page.php:22
100.28867736512apply_filters( ).../post-template.php:256
110.28867736912WP_Hook->apply_filters( ).../plugin.php:205
120.28997742440do_shortcode( ).../class-wp-hook.php:310
130.29007748496preg_replace_callback ( ).../shortcodes.php:273
142.58017757416do_shortcode_tag( ).../shortcodes.php:273
152.58017757888bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 18
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19677193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.20087197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28727718072get_template_part( ).../page.php:28
60.28727718648locate_template( ).../general-template.php:206
70.28727718776load_template( ).../template.php:720
80.28737719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28837736264the_content( ).../content-page.php:22
100.28867736512apply_filters( ).../post-template.php:256
110.28867736912WP_Hook->apply_filters( ).../plugin.php:205
120.28997742440do_shortcode( ).../class-wp-hook.php:310
130.29007748496preg_replace_callback ( ).../shortcodes.php:273
142.58017757416do_shortcode_tag( ).../shortcodes.php:273
152.58017757888bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 29
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19677193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.20087197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28727718072get_template_part( ).../page.php:28
60.28727718648locate_template( ).../general-template.php:206
70.28727718776load_template( ).../template.php:720
80.28737719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28837736264the_content( ).../content-page.php:22
100.28867736512apply_filters( ).../post-template.php:256
110.28867736912WP_Hook->apply_filters( ).../plugin.php:205
120.28997742440do_shortcode( ).../class-wp-hook.php:310
130.29007748496preg_replace_callback ( ).../shortcodes.php:273
142.58017757416do_shortcode_tag( ).../shortcodes.php:273
152.58017757888bicluster_genes_shortcode( ).../shortcodes.php:433
ID: 552fa607b744335b89d7fbbe
# Conditions: 166
# Genes: 18
Residual: 0.43406741376838

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • Strain.CDC1551..replicate.2
    • Strain.CDC1551..replicate.3
    • Strain.CDC1551..replicate.4
    • Strain.1006...replicate.3
    • Strain.1006...replicate.4
    • Strain.1254...replicate.4
    • Strain.1254...replicate.2
    • Strain.1843...replicate.2
    • Strain.3160..replicate.4
    • Strain.9800608..replicate.4
    • Strain.9802501..replicate1
    • H37Rv.Vs.M.bovis.rep2
    • H37Rv.Vs.M.bovis.rep3
    • H37Rv.Vs.M.bovis.rep4
    • MTB.strain.1254.Ctrl.vs.high.aeration.rep2
    • pH4.8vspH6.8..2h.
    • pH4.8vspH6.8..6h.
    • pH4.8vspH6.8..7h.
    • pH5.2vspH6.8..5h.
    • pH5.2vspH6.8..5.5h.
    • pH5.2vspH6.8..10.5h.
    • pH5.6vspH6.8..2h.A
    • Mtm.0.2ug.mL.vs.ctrl.12h.1.x
    • PBS.Tw.DMSOvs7H9..6h
    • H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
    • H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3
    • Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
    • Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
    • Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
    • Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
    • Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.1
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.2
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.5
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.6
    • Glucose_5mM_10min_01
    • Glycerol_1.
    • Glycerol_1._30M_01
    • Starvation_1254_12h_01
    • Starvation_1254_12h_02
    • Starvation_1254_12h_03
    • Starvation_1254_12h_04
    • Starvation_1254_24h_01
    • Starvation_1254_24h_02
    • Starvation_1254_24h_03
    • Starvation_1254_24h_04
    • Starvation_1254_24h_06
    • Starvation_1254_24h_07
    • Starvation_1254_24h_08
    • Starvation_1254_3d_01
    • Starvation_1254_3d_02
    • Starvation_1254_3d_03
    • Starvation_1254_3d_04
    • Starvation_1254_5d_01
    • Starvation_1254_5d_02
    • Starvation_1254_5d_03
    • Starvation_1254_5d_04
    • Starvation_1254_6h_01
    • Starvation_1254_6h_03
    • Starvation_1254_6h_05
    • Starvation_1254_6h_06
    • Starvation_1254_6h_07
    • Starvation_1254_6h_08
    • Starvation_1254_OA50_12h_01
    • Starvation_1254_OA50_12h_02
    • Starvation_1254_OA50_12h_03
    • Starvation_1254_OA50_12h_04
    • Starvation_1254_OA50_24h_01
    • Starvation_1254_OA50_24h_03
    • Starvation_1254_OA50_3d_02
    • Starvation_1254_OA50_5d_01
    • Starvation_1254_OA50_5d_02
    • Starvation_1254_OA50_6h_01
    • Starvation_1254_OA50_6h_02
    • Starvation_1254_OA50_6h_03
    • Starvation_1254_OA50_6h_04
    • Starvation_1254_PA50_6h_01
    • Starvation_1254_PA50_6h_02
    • Starvation_1254_PA50_6h_04
    • Starvation_OA50_24h_01
    • Starvation_OA50_24h_02
    • Starvation_OA50_24h_03
    • Starvation_OA50_6h_02
    • Starvation_OA50_6h_04
    • H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.1
    • H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3
    • H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.1
    • H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2
    • H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.3
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.1
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.3
    • H37Rv.reaeration.for.1hrs.rep.1
    • H37Rv.reaeration.for.1hrs.rep.3
    • H37Rv.reaeration.for.4hrs.rep.1
    • H37Rv.reaeration.for.4hrs.rep.2
    • H37Rv.reaeration.for.4hrs.rep.3
    • H37Rv.reaeration.for.6hrs.rep.2
    • H37Rv.reaeration.for.12hrs.rep.2
    • H37Rv.reaeration.for.12hrs.rep.3
    • H37Rv.reaeration.for.12hrs.rep.4
    • H37Rv.reaeration.for.12hrs.rep.5
    • H37Rv.reaeration.for.24hrs.rep.1
    • H37Rv.reaeration.for.24hrs.rep.3
    • hip.mutant.KL2801..biological.rep1
    • hip.mutant.KL2825..biological.rep1
    • hip.mutant.HTS1090..biological.rep2
    • hip.mutant.HTS1105..biological.rep1
    • hip.mutant.HTS1105..biological.rep2
    • hip.mutant.HT1116..biological.rep1
    • hip.mutant.HT1116..biological.rep2
    • hip.mutant.HT1117..biological.rep1
    • hip.mutant.HT1117..biological.rep2
    • hip.mutant.HT1137..biological.rep1
    • X40ug.mL.5CL.pH5.6..2h..1
    • X40ug.mL.5CL.pH5.6..4h..1
    • X40ug.mL.5CL.pH5.6..4h..2
    • X40ug.mL.5CL.pH5.6..4h..3
    • X80ug.mL.5CL.pH5.6..2h.
    • X0.12mg.mL.BZA.pH5.6..4h..1
    • X0.12mg.mL.BZA.pH5.6..4h..2
    • X0.12mg.mL.BZAvspH5.6..7h.
    • X0.12mg.mL.BZAvspH5.6..11h.
    • X0.12mg.mL.Nam.pH5.6..4h..1
    • X0.12mg.mL.NamvspH5.6..4h.
    • X0.12mg.mL.NamvspH5.6..5.5h.
    • X0.12mg.mL.NamvspH5.6..7h.
    • X1.2mg.mL.NamvspH5.6..10.5h.
    • X0.12mg.mL.PZA.pH5.6..4h..2
    • X0.12mg.mL.PZAvspH5.6..4h.
    • X0.12mg.mL.PZA.pH5.6..5h.
    • X0.12mg.mL.PZAvspH5.6..5.5h.
    • X0.12mg.mL.PZAvspH5.6..6h.
    • X0.12mg.mL.PZAvspH5.6..6h.A
    • X0.12mg.mL.PZAvspH5.6..10.5h.
    • X0.12mg.mL.PZAvspH5.6..11h.
    • X1.2mg.mL.PZA.pH5.6..2h..
    • X1.2mg.mL.PZAvspH5.6..4h.A
    • X1.2mg.mL.PZAvspH5.6..4h.B
    • X1.2mg.mL.PZA.pH5.6..5h.
    • X1.2mg.mL.PZAvspH5.6..6h.
    • X1.2mg.mL.PZAvspH5.6..6h.A
    • X1.2mg.mL.PZAvspH5.6..7h.
    • X1.2mg.mL.PZAvspH5.6..7h.A
    • X1.2mg.mL.PZAvspH5.6..10.5h.
    • X1.2mg.mL.PZAvspH5.6..16h.