Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18627193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19077197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.29597718072get_template_part( ).../page.php:28
60.29597718648locate_template( ).../general-template.php:206
70.29607718776load_template( ).../template.php:720
80.29607719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.29747736264the_content( ).../content-page.php:22
100.29777736512apply_filters( ).../post-template.php:256
110.29777736912WP_Hook->apply_filters( ).../plugin.php:205
120.29957742440do_shortcode( ).../class-wp-hook.php:310
130.29967748496preg_replace_callback ( ).../shortcodes.php:273
140.29967749120do_shortcode_tag( ).../shortcodes.php:273
150.29977749120bicluster_info_shortcode( ).../shortcodes.php:433
160.29987749320file_get_contents ( ).../short_codes.php:666

( ! ) Notice: Trying to get property 'bicluster' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 667
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18627193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19077197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.29597718072get_template_part( ).../page.php:28
60.29597718648locate_template( ).../general-template.php:206
70.29607718776load_template( ).../template.php:720
80.29607719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.29747736264the_content( ).../content-page.php:22
100.29777736512apply_filters( ).../post-template.php:256
110.29777736912WP_Hook->apply_filters( ).../plugin.php:205
120.29957742440do_shortcode( ).../class-wp-hook.php:310
130.29967748496preg_replace_callback ( ).../shortcodes.php:273
140.29967749120do_shortcode_tag( ).../shortcodes.php:273
150.29977749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'id' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 669
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18627193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19077197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.29597718072get_template_part( ).../page.php:28
60.29597718648locate_template( ).../general-template.php:206
70.29607718776load_template( ).../template.php:720
80.29607719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.29747736264the_content( ).../content-page.php:22
100.29777736512apply_filters( ).../post-template.php:256
110.29777736912WP_Hook->apply_filters( ).../plugin.php:205
120.29957742440do_shortcode( ).../class-wp-hook.php:310
130.29967748496preg_replace_callback ( ).../shortcodes.php:273
140.29967749120do_shortcode_tag( ).../shortcodes.php:273
150.29977749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_conditions' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 670
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18627193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19077197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.29597718072get_template_part( ).../page.php:28
60.29597718648locate_template( ).../general-template.php:206
70.29607718776load_template( ).../template.php:720
80.29607719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.29747736264the_content( ).../content-page.php:22
100.29777736512apply_filters( ).../post-template.php:256
110.29777736912WP_Hook->apply_filters( ).../plugin.php:205
120.29957742440do_shortcode( ).../class-wp-hook.php:310
130.29967748496preg_replace_callback ( ).../shortcodes.php:273
140.29967749120do_shortcode_tag( ).../shortcodes.php:273
150.29977749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 671
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18627193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19077197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.29597718072get_template_part( ).../page.php:28
60.29597718648locate_template( ).../general-template.php:206
70.29607718776load_template( ).../template.php:720
80.29607719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.29747736264the_content( ).../content-page.php:22
100.29777736512apply_filters( ).../post-template.php:256
110.29777736912WP_Hook->apply_filters( ).../plugin.php:205
120.29957742440do_shortcode( ).../class-wp-hook.php:310
130.29967748496preg_replace_callback ( ).../shortcodes.php:273
140.29967749120do_shortcode_tag( ).../shortcodes.php:273
150.29977749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'residual' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 672
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18627193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19077197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.29597718072get_template_part( ).../page.php:28
60.29597718648locate_template( ).../general-template.php:206
70.29607718776load_template( ).../template.php:720
80.29607719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.29747736264the_content( ).../content-page.php:22
100.29777736512apply_filters( ).../post-template.php:256
110.29777736912WP_Hook->apply_filters( ).../plugin.php:205
120.29957742440do_shortcode( ).../class-wp-hook.php:310
130.29967748496preg_replace_callback ( ).../shortcodes.php:273
140.29967749120do_shortcode_tag( ).../shortcodes.php:273
150.29977749120bicluster_info_shortcode( ).../shortcodes.php:433
ID:
# Conditions:
# Genes:
Residual:

Bicluster Motifs

Bicluster Genes

  • Rv0820
  • Rv1113
  • Rv1161
  • Rv1163
  • Rv1234
  • Rv1235
  • Rv1236
  • Rv1715
  • Rv1716
  • Rv1718
  • Rv1719
  • Rv1851
  • Rv2071c
  • Rv2549c
  • Rv2667
  • Rv2740
  • Rv3057c
  • Rv3217c
  • Rv3346c

Bicluster Conditions

  • MTB.strain.1254.Ctrl.vs.high.aeration.rep3
  • X4mM.H2O2vsctrl..2h.
  • X4mM.H2O2.ctrl..2h...1
  • X4mM.H2O2.ctrl..4h...1
  • X4mM.H2O2.ctrl..4h...2
  • X4mM.H2O2vsctrl..4h.A
  • H37Rv.diamide.1h.rep.4
  • H37Rv.diamide.1h.rep.5
  • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
  • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2
  • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.3
  • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
  • CHP_25uM_1h_01
  • CHP_25uM_24h_01
  • H37Rv.reaeration.for.1hrs.rep.1
  • H37Rv.reaeration.for.1hrs.rep.8
  • H37Rv.reaeration.for.4hrs.rep.1
  • H37Rv.reaeration.for.4hrs.rep.3
  • H37Rv.reaeration.for.4hrs.rep.4
  • H37Rv.reaeration.for.4hrs.rep.8
  • H37Rv.reaeration.for.6hrs.rep.3
  • H37Rv.reaeration.for.6hrs.rep.5
  • H37Rv.reaeration.for.12hrs.rep.4
  • H37Rv.reaeration.for.12hrs.rep.5
  • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
  • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.1
  • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.2
  • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.5
  • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.6
  • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.2
  • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.3
  • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.4
  • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.5
  • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.2
  • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.3
  • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.4
  • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.6
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.1
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.4
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.6
  • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.3
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.4
  • A00437_Q1_t30_diamide
  • A00437_Q2_t60_diamide
  • A00436_Q2_t60_diamide
  • X1ug.mL..59vsDMSO..6hA
  • X10ug.mL..59vsDMSO..6h
  • X10ug.mL..109.DMSO..6h
  • X10ug.mL..109vsDMSO..6h
  • X10ug.mL..109vsDMSO..6hA
  • X1ug.mL..241vsDMSO..6h
  • X1ug.mL..241vsDMSO..6hA
  • X10ug.mL..241.DMSO..6h
  • X10ug.mL..241vsDMSO..6h
  • X.241..1ug.mL..DMSO..12h..1
  • X0.5ug.mL..111891vsDMSO.6h
  • X0.5ug.mL..111891vsDMSO.6hA
  • X1.ug.mL..111891vsDMSO..6h
  • X1ug.mL..111891.DMSO..12h..2
  • X0.5ug.mL..111895vsDMSO..6h
  • X0.5ug.mL..111895vsDMSO.6h
  • X2ug.mL..111895vsDMSO..6h
  • X0.5ug.mL..121940vsDMSO.6h
  • X0.5ug.mL..121940vsDMSO.6hA
  • X2ug.mL..121940vsDMSO..6h
  • X0.5ug.mL..124196vsDMSO..6h
  • X0.5ug.mL..124196vsDMSO..6hA
  • X1ug.mL..124196vsDMSO..6h
  • X1ug.mL..124196vsDMSO..6hA
  • X0.1mg.mL.TriclosanvsEtOH..6h
  • X0.1mg.mL.TriclosanvsEtOH..6hA
  • X0.1mg.mLTriclosanvsEtOH.6hB
  • X0.15mg.mL.TricvsEtOH..6h
  • X0.15mg.mL.TricvsEtOH..6hA
  • X50ug.mL.Triclosan.DMSO..6h
  • X50ug.mL.Triclosan.EtOH
  • X50ug.mL.TriclosanvsEtOH..6h
  • X50ug.mL.TriclosanvsEtOH..6hA
  • X100ug.mL.TriclosanvsEtOH..6h
  • X100ug.mL.TriclosanvsEtOH..6hA
  • X10ug.mL.EMBvsDMSO..6hA
  • X20ug.mL.ethambutol.DMSO
  • X0.2mg.mL.AmpvsEtOH..6h
  • X0.2mg.mL.AmpvsEtOH..6hA
  • X0.2mg.mL.AmpvsEtOH..6hB
  • X0.2mg.mL.AmpvsEtOH..6hC
  • X0.5ug.mL.CeruleninvsDMSO..6hA
  • X0.5ug.mL.CeruleninvsDMSO..6hB
  • X0.5ug.mL.CeruleninvsDMSO..6hC
  • X20ug.mL.Cephalexin.Ctrl..6h..1
  • X20ug.mL.Cephalexin.Ctrl..6h..2
  • X100ug.mL.Cephalexin.Ctrl..6h
  • X100ug.mL.Cphx.DMSO..6h
  • X100uM.DipyridylvsCtrl..6hA
  • X250uM.DeferroxaminevsDMSO..6h
  • X12ug.mLEthionamidevsEtOH.6h
  • X12ug.mLEthionamidevsEtOH.6hA
  • X40ug.mL.EtavsEtOH..6hA
  • X0.2ug.mL.INH.EtOH..6h
  • X0.4ug.mL.INHvsEtOH..6h
  • X0.4ug.mL.INHvsEtOH..6hA
  • X9ug.mLAscidideminNpvsDMSO.6h
  • X9ug.mLAscidideminNpvsDMSO.6hA
  • X130ug.mL.TLMvsDMSO..6h
  • X130ug.mL.TLMvsDMSO..6hA
  • X0.2mg.mL.TLMvsEtOH..6h
  • X0.2mg.mL.TLMvsEtOH..6hA
  • X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.1
  • X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.2
  • X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3.x
  • X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
  • X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1
  • X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
  • X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.1
  • X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.2
  • X130ug.ml.TLM.vs.DMSO.6hrs.rep.1
  • X130ug.ml.TLM.vs.DMSO.6hrs.rep.2
  • X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1
  • X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.3
  • MTB1254.3524.1._INH_20MIN
  • MTB1254.3524.2._INH_20MIN
  • X0.2mg.ml.Ampicillin.vs.Ethanol.6hrs
  • X10ug.ml.Ethambutol.vs.DMSO.12hrs.3
  • X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.y
  • X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3.y
  • H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
  • H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
  • H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.1
  • H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.2
  • H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.3
  • H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
  • H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
  • H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
  • H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
  • H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
  • H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.2
  • H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.1
  • H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.2
  • H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.1
  • H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.2
  • H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.1
  • H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.2