Bicluster


( ! ) Warning: file_get_contents(https://mtb-egrin2.systemsbiology.net/api/api/v1.0.0/bicluster_info/552fab26b744335b89d81482): failed to open stream: HTTP request failed! HTTP/1.1 500 Internal Server Error in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 666
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17027193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17497197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27457718072get_template_part( ).../page.php:28
60.27457718648locate_template( ).../general-template.php:206
70.27457718776load_template( ).../template.php:720
80.27457719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27587736264the_content( ).../content-page.php:22
100.27607736512apply_filters( ).../post-template.php:256
110.27607736912WP_Hook->apply_filters( ).../plugin.php:205
120.27757742440do_shortcode( ).../class-wp-hook.php:310
130.27777748496preg_replace_callback ( ).../shortcodes.php:273
140.27777749120do_shortcode_tag( ).../shortcodes.php:273
150.27777749120bicluster_info_shortcode( ).../shortcodes.php:433
160.27787749320file_get_contents ( ).../short_codes.php:666

( ! ) Notice: Trying to get property 'bicluster' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 667
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17027193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17497197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27457718072get_template_part( ).../page.php:28
60.27457718648locate_template( ).../general-template.php:206
70.27457718776load_template( ).../template.php:720
80.27457719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27587736264the_content( ).../content-page.php:22
100.27607736512apply_filters( ).../post-template.php:256
110.27607736912WP_Hook->apply_filters( ).../plugin.php:205
120.27757742440do_shortcode( ).../class-wp-hook.php:310
130.27777748496preg_replace_callback ( ).../shortcodes.php:273
140.27777749120do_shortcode_tag( ).../shortcodes.php:273
150.27777749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'id' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 669
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17027193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17497197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27457718072get_template_part( ).../page.php:28
60.27457718648locate_template( ).../general-template.php:206
70.27457718776load_template( ).../template.php:720
80.27457719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27587736264the_content( ).../content-page.php:22
100.27607736512apply_filters( ).../post-template.php:256
110.27607736912WP_Hook->apply_filters( ).../plugin.php:205
120.27757742440do_shortcode( ).../class-wp-hook.php:310
130.27777748496preg_replace_callback ( ).../shortcodes.php:273
140.27777749120do_shortcode_tag( ).../shortcodes.php:273
150.27777749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_conditions' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 670
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17027193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17497197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27457718072get_template_part( ).../page.php:28
60.27457718648locate_template( ).../general-template.php:206
70.27457718776load_template( ).../template.php:720
80.27457719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27587736264the_content( ).../content-page.php:22
100.27607736512apply_filters( ).../post-template.php:256
110.27607736912WP_Hook->apply_filters( ).../plugin.php:205
120.27757742440do_shortcode( ).../class-wp-hook.php:310
130.27777748496preg_replace_callback ( ).../shortcodes.php:273
140.27777749120do_shortcode_tag( ).../shortcodes.php:273
150.27777749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 671
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17027193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17497197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27457718072get_template_part( ).../page.php:28
60.27457718648locate_template( ).../general-template.php:206
70.27457718776load_template( ).../template.php:720
80.27457719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27587736264the_content( ).../content-page.php:22
100.27607736512apply_filters( ).../post-template.php:256
110.27607736912WP_Hook->apply_filters( ).../plugin.php:205
120.27757742440do_shortcode( ).../class-wp-hook.php:310
130.27777748496preg_replace_callback ( ).../shortcodes.php:273
140.27777749120do_shortcode_tag( ).../shortcodes.php:273
150.27777749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'residual' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 672
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17027193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17497197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27457718072get_template_part( ).../page.php:28
60.27457718648locate_template( ).../general-template.php:206
70.27457718776load_template( ).../template.php:720
80.27457719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27587736264the_content( ).../content-page.php:22
100.27607736512apply_filters( ).../post-template.php:256
110.27607736912WP_Hook->apply_filters( ).../plugin.php:205
120.27757742440do_shortcode( ).../class-wp-hook.php:310
130.27777748496preg_replace_callback ( ).../shortcodes.php:273
140.27777749120do_shortcode_tag( ).../shortcodes.php:273
150.27777749120bicluster_info_shortcode( ).../shortcodes.php:433
ID:
# Conditions:
# Genes:
Residual:

Bicluster Motifs

Bicluster Genes

  • Rv0347
  • Rv0348
  • Rv0349
  • Rv0645c
  • Rv0653c
  • Rv0802c
  • Rv1472
  • Rv1766
  • Rv2304c
  • Rv2358
  • Rv2359
  • Rv2698
  • Rv3636

Bicluster Conditions

  • MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1
  • MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
  • H37Rv.hypoxia.2hr.rep.1
  • H37Rv.hypoxia.2hr.rep.2
  • H37Rv.hypoxia.2hr.rep.4
  • H37Rv.hypoxia.2hr.rep.6
  • NRP.Day8..1
  • NRP.Day10..3
  • NRP.Day12..2
  • NRP.Day12..3
  • NRP.Day14..1
  • NRP.Day14..2
  • NRP.Day14..5
  • NRP.Day14..7
  • NRP.Day14..8
  • NRP.Day14..9
  • NRP.Day30..1
  • pH4.8vspH6.8..2h.
  • pH4.8vspH6.8..2h.A
  • pH4.8vspH6.8..4h.A
  • pH4.8vspH6.8..11h.
  • pH5.2vspH6.8..16h.
  • pH5.6vspH6.8..2h.
  • pH5.6vspH6.8..2h.A
  • pH5.6vspH6.8..4h.B
  • pH5.6vspH6.8..5h.
  • pH5.6vspH6.8..7h.
  • pH5.6vspH6.8..16h.
  • X4mM.H2O2vsctrl..2h.A
  • X4mM.H2O2.ctrl..2h...1
  • X4mM.H2O2.ctrl..4h...1
  • X4mM.H2O2vsctrl..4h.
  • H2O2.4mM.vs.ctrl.8h.1
  • H37Rv.hypoxia.4hr.rep.7
  • H37Rv.hypoxia.8hr.rep.1
  • H37Rv.hypoxia.12hr.rep.1
  • H37Rv.hypoxia.12hr.rep.3
  • H37Rv.hypoxia.1.day.rep.2
  • H37Rv.hypoxia.1.day.rep.3
  • H37Rv.hypoxia.1.day.rep.7
  • H37Rv.hypoxia.1.day.rep.10
  • H37Rv.hypoxia.4.day.rep.2
  • H37Rv.hypoxia.4.day.rep.4
  • H37Rv.hypoxia.4.day.rep.5
  • H37Rv.hypoxia.4.day.rep.6
  • H37Rv.hypoxia.7.day.rep.1
  • H37Rv.hypoxia.7.day.rep.2
  • H37Rv.hypoxia.7.day.rep.3
  • H37Rv.hypoxia.7.day.rep.4
  • H37Rv.hypoxia.7.day.rep.5
  • H37Rv.hypoxia.7.day.rep.7
  • H37Rv.diamide.1h.rep.1
  • H37Rv.diamide.1h.rep.2
  • H37Rv.diamide.1h.rep.3
  • H37Rv.diamide.1h.rep.4
  • H37Rv.diamide.1h.rep.6
  • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
  • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.5
  • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6
  • CHP_25uM_24h_01
  • CHP_25uM_2h_01
  • Mtb.Erdman.strain.20.ppm.CO.rep.2
  • Mtb.Erdman.strain.200.ppm.CO.rep.2
  • Mtb.response.to.pH.5.5..6.replicates.
  • Mtb.response.to.pH.6.5..6.replicates.
  • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.3
  • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.4
  • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
  • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.2
  • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.3
  • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.4
  • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.6
  • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.1
  • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.2
  • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.3
  • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.5
  • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.6
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.1
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.2
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.4
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.6
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.1
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.2
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.3
  • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.3
  • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.5
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.1
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.2
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.3
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.4
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.5
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.6
  • SG2.A0_N02A01c3
  • SG2.B0_N02A09c3
  • SG2.D0_N02A01c5
  • SG6.G0_N5A02cy.5
  • SG6.H0_N5A03cy.5
  • SG6_A0_N7A10cy.3
  • SG6_B0_N7A10cy.5
  • SG7.CT0_N11A03cy.5
  • SG7.DT0_N11A04cy.5
  • SG.ISB.3.0B_N30A01cy.5
  • SG7.DT1_N11A08cy.5
  • SG7.CT1_N11A07cy.5
  • SG7.BT1_N11A06cy.5
  • SG6.D1_N5A05cy.5
  • SG2.D1_N02A02c5
  • SG2.B1_N02A10c3
  • SG2.A1_N02A02c3
  • SG8.A.Day.2_N37A08cy.3
  • SG8.C.Day.2_N37A12cy.5
  • SG2.D2_N02A03c5
  • SG8.A.Day.5_N37A10cy.3
  • SG8.B.Day.5_N37A08cy.5
  • SG2.B5_N02A09c5
  • SG6D.T7_N11A02cy.3
  • SG7.T7D_N11A11cy.5
  • SG8.B.Day.7_N37A09cy.5
  • SG8.A.Day.7_N37A11cy.3
  • SG.ISB.3.7A_N30A02cy.5
  • SG.ISB.3.7D_N30A04cy.3
  • SG12.B0_N32A09cy.3
  • SG12.A0_N32A01cy.3
  • SG12.A1_N32A02cy.3
  • SG12.B1_N32A10cy.3
  • SG12.C1_N32A06cy.5
  • SG12.A2_N32A03cy.3
  • SG12.B2_N32A11cy.3
  • SG12.C2_N32A07cy.5
  • SG12.A4_N32A04cy.3
  • SG12.B4_N32A12cy.3
  • SG12.C4_N32A08cy.5
  • SG12.A6_N32A05cy.3
  • SG12.B6_N32A01cy.5
  • SG12.A8_N32A06cy.3
  • SG12.B8_N32A02cy.5
  • SG12.C8_N32A10cy.5
  • SG12.B24_N32A03cy.5
  • SG12.A24_N32A07cy.3
  • SG.ISB.3.8A_N30A04cy.5
  • SG2.A9_N02A08c3
  • SG6.D11_N8A09cy.5
  • SG6.B11_N5A11cy.5
  • SG6.A11_N5A10cy.5
  • SG7.T12C_N11A11cy.3
  • SG7.T12A_N11A09cy.3
  • SG.ISB.3.12C_N30A07cy.5
  • SG6.A14_N8A10cy.5
  • SG6.B14_N8A11cy.5
  • SG6.C14_N8A12cy.5
  • WT_140mM_NaCl_Rep1
  • WT_140mM_NaCl_Rep4
  • A00470_Q3_t90_diamide
  • A00436_Q1_t30_diamide
  • A00436_Q3_t90_diamide