Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.15767193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16157197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.32297718072get_template_part( ).../page.php:28
60.32297718648locate_template( ).../general-template.php:206
70.32307718776load_template( ).../template.php:720
80.32307719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.32437736264the_content( ).../content-page.php:22
100.32467736512apply_filters( ).../post-template.php:256
110.32467736912WP_Hook->apply_filters( ).../plugin.php:205
120.32627742440do_shortcode( ).../class-wp-hook.php:310
130.32647748496preg_replace_callback ( ).../shortcodes.php:273
145.07637753320do_shortcode_tag( ).../shortcodes.php:273
155.07647753792bicluster_genes_shortcode( ).../shortcodes.php:433
165.07657754296file_get_contents ( ).../short_codes.php:15
( ! ) Notice: Trying to get property 'genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 16
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.15767193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16157197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.32297718072get_template_part( ).../page.php:28
60.32297718648locate_template( ).../general-template.php:206
70.32307718776load_template( ).../template.php:720
80.32307719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.32437736264the_content( ).../content-page.php:22
100.32467736512apply_filters( ).../post-template.php:256
110.32467736912WP_Hook->apply_filters( ).../plugin.php:205
120.32627742440do_shortcode( ).../class-wp-hook.php:310
130.32647748496preg_replace_callback ( ).../shortcodes.php:273
145.07637753320do_shortcode_tag( ).../shortcodes.php:273
155.07647753792bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 18
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.15767193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16157197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.32297718072get_template_part( ).../page.php:28
60.32297718648locate_template( ).../general-template.php:206
70.32307718776load_template( ).../template.php:720
80.32307719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.32437736264the_content( ).../content-page.php:22
100.32467736512apply_filters( ).../post-template.php:256
110.32467736912WP_Hook->apply_filters( ).../plugin.php:205
120.32627742440do_shortcode( ).../class-wp-hook.php:310
130.32647748496preg_replace_callback ( ).../shortcodes.php:273
145.07637753320do_shortcode_tag( ).../shortcodes.php:273
155.07647753792bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 29
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.15767193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16157197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.32297718072get_template_part( ).../page.php:28
60.32297718648locate_template( ).../general-template.php:206
70.32307718776load_template( ).../template.php:720
80.32307719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.32437736264the_content( ).../content-page.php:22
100.32467736512apply_filters( ).../post-template.php:256
110.32467736912WP_Hook->apply_filters( ).../plugin.php:205
120.32627742440do_shortcode( ).../class-wp-hook.php:310
130.32647748496preg_replace_callback ( ).../shortcodes.php:273
145.07637753320do_shortcode_tag( ).../shortcodes.php:273
155.07647753792bicluster_genes_shortcode( ).../shortcodes.php:433
ID: 552fac61b744335b89d81a1a
# Conditions: 153
# Genes: 4
Residual: 0.42995589155152

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • pH4.8vspH6.8..2h.
    • pH4.8vspH6.8..2h.B
    • pH4.8vspH6.8..4h.B
    • pH4.8vspH6.8..7h.
    • pH4.8vspH6.8..11h.
    • pH5.2vspH6.8..5.5h.
    • pH5.2vspH6.8..16h.
    • pH5.6vspH6.8..2h.
    • pH5.6vspH6.8..2h.A
    • pH5.6vspH6.8..4h.
    • pH5.6vspH6.8..4h.B
    • pH5.6vspH6.8..5h.
    • pH5.6vspH6.8..16h.
    • X20ug.ml.KCN.vs.DMSO.6hrs.x
    • Mtb.response.to.pH.6.5..6.replicates.
    • MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.3
    • X1ug.mL..59vsDMSO..6h
    • X10ug.mL..59.DMSO..6h
    • X10ug.mL..109vsDMSO..6h
    • X.109..1ug.mL..vs.DMSO..12h..replicate.2..GEO.acc.GSM28052.
    • X.109..10ug.mL..vs.DMSO..12h..replicate.1..GEO.acc..GSM28053.
    • X.109..10ug.mL..DMSO..12h..replicate.2..GEO.acc..GSM28054.
    • X10ug.mL..241.DMSO..6h
    • X10ug.mL..241vsDMSO..6h
    • X.241..10ug.mL..DMSO..12h..1
    • X.241..10ug.mL..DMSO..12h..2
    • X0.2ug.mL..111891.DMSO..5.5h..1
    • X0.2ug.mL..111891.DMSO..5.5h..2
    • X1ug.mL..111891vsDMSO..6h
    • X2ug.mL..111891vsDMSO..6h
    • X1ug.mL..111891.DMSO..12h..2
    • X0.5ug.mL..111895vsDMSO..6h
    • X1ug.mL..111895vsDMSO..6h
    • X0.5ug.mL..121940vsDMSO.6h
    • X0.5ug.mL..121940vsDMSO.6hA
    • X2ug.mL..121940vsDMSO..6h
    • X1ug.mL..121940.DMSO..12h
    • X0.5ug.mL..124196vsDMSO..6h
    • X1ug.mL..124196vsDMSO..6h
    • X1ug.mL..124196vsDMSO..6hA
    • X0.1mMGSNO.10ug.mLmdvsDMSO.6h
    • X25ug.mLCPZ.0.1mMGSNO.DMSO..1
    • X25ug.mLCPZ.0.1mMGSNOvsDMSO.A
    • X5ug.mL.CFZ.0.1mM.GSNO.DMSO..1
    • DIPED.5ug.mL.vs.DMSO.12h.1
    • DIPED.5ug.mL.vs.DMSO.12h.2
    • DIPED.10ug.mL.vs.DMSO.12h.1
    • DIPED.10ug.mL.vs.DMSO.12h.2
    • DIPED..50ug.mL..DMSO..12h
    • DIPED.50ug.mL.vs.DMSO.12h.1
    • DIPED.50ug.mL.vs.DMSO.12h.2
    • DIPED..100ug.mL..DMSO..12h..3
    • X0.1mg.mLTriclosanvsEtOH.6hB
    • X10ug.mL.TriclosanvsDMSO..6hC
    • X50ug.mL.Triclosan.DMSO..6h
    • X50ug.mL.TriclosanvsEtOH..6hA
    • X100ug.mL.TriclosanvsEtOH..6h
    • X10ug.mL.EconazolevsEtOH..6h
    • X10ug.mL.EconazolevsEtOH..6hA
    • X10ug.mL.EMBvsDMSO..6h
    • EMB..10ug.mL..DMSO..12h
    • EMB.10ug.mL.vs.DMSO.12h.1
    • EMB.10ug.mL.vs.DMSO.12h.4
    • X20ug.mL.ethambutol.DMSO
    • X0.2mg.mL.AmpvsEtOH..6h
    • X0.2mg.mL.AmpvsEtOH..6hA
    • X0.2mg.mL.AmpvsEtOH..6hC
    • X0.32ug.mL.CervsEtOH..6h
    • X0.5ug.mL.CeruleninvsDMSO..6hB
    • X100ug.mL.Cephalexin.Ctrl..6h
    • X10ug.mLchlorpromazinevsctrl.6h
    • X10ug.mL.ChlorprovsEtOH..6h
    • X60ug.mL.ChlorprovsEtOH..6h
    • X10ug.mL.ClotrimvsEtOH..6hA
    • X10ug.mL.clotrimvsEtOH..6h
    • X24ug.mL.cltrmazole.DMS..6h..1
    • X24ug.mL.cltrmazole.DMS..6h..3
    • X50uM.CCCP.DMSO..6h..1
    • X50uM.CCCP.DMSO..6h..2
    • X50uM.CCCPvsDMSO..6h
    • X0.5mM.DNP.DMSO..6h
    • X1mM.DNP.DMSO..6h..1
    • X100uM.DCCD.DMSO..6h
    • X100uM.DipyridylvsCtrl..6hA
    • X200uM.Dipyridylvsctrl..6h
    • X150uM.Deferroxaminevsctrl..6hA
    • X250uM.DeferroxaminevsDMSO..6h
    • X2mM.DTTvsDMSO..6h
    • X12ug.mLEthionamidevsEtOH.6hA
    • X6ug.mL.MenadionevsDMSO..6h
    • X10ug.mL.menadionevsDMSO..6h
    • X10ug.mLmdn.0.1mMGSNO.DMSO..2
    • X0.1ug.mL.RifpvsEtOH..6hA
    • X0.5ug.mLRifapentinevsEtOH.6hA
    • X130ug.mL.TLMvsDMSO..6h
    • X130ug.mL.TLMvsDMSO..6hA
    • X0.13mg.mL.TLMvsDMSO..6h
    • X0.2mg.mL.TLMvsEtOH..6h
    • X1uM.ValinomycinvsDMSO..6h
    • X1uM.ValinomycinvsDMSO..6h.B
    • X10uM.ValinomycinvsDMSO..6h
    • X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
    • X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.1
    • X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.2
    • X130ug.ml.TLM.vs.DMSO.6hrs.rep.1
    • X130ug.ml.TLM.vs.DMSO.6hrs.rep.2
    • X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.1
    • X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.2
    • X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.4
    • X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.1
    • MTB1254.3524.2._INH_20MIN
    • MTB1254_INH_20MIN
    • X10ug.ml.Ethambutol.vs.DMSO.12hrs.3
    • X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.y
    • X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3.y
    • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.1
    • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.2
    • CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.1
    • CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.2
    • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.1
    • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.2
    • CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.1
    • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.1
    • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.2
    • CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.1
    • CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.2
    • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.1
    • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.2
    • CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.1
    • CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.2
    • H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
    • H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.1
    • H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.2
    • H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.3
    • H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
    • H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
    • H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
    • H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
    • H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
    • H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
    • H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
    • H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.2
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.1
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.1
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.2
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.2
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.1
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.1
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2
    • H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.DS.rep.1
    • H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.DS.rep.2
    • H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.1
    • H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.2