Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17457193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17797197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27147718072get_template_part( ).../page.php:28
60.27147718648locate_template( ).../general-template.php:206
70.27157718776load_template( ).../template.php:720
80.27157719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27247736264the_content( ).../content-page.php:22
100.27267736512apply_filters( ).../post-template.php:256
110.27267736912WP_Hook->apply_filters( ).../plugin.php:205
120.27387742440do_shortcode( ).../class-wp-hook.php:310
130.27397748496preg_replace_callback ( ).../shortcodes.php:273
140.27397749120do_shortcode_tag( ).../shortcodes.php:273
150.27397749120bicluster_info_shortcode( ).../shortcodes.php:433
160.27407749320file_get_contents ( ).../short_codes.php:666
( ! ) Notice: Trying to get property 'bicluster' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 667
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17457193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17797197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27147718072get_template_part( ).../page.php:28
60.27147718648locate_template( ).../general-template.php:206
70.27157718776load_template( ).../template.php:720
80.27157719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27247736264the_content( ).../content-page.php:22
100.27267736512apply_filters( ).../post-template.php:256
110.27267736912WP_Hook->apply_filters( ).../plugin.php:205
120.27387742440do_shortcode( ).../class-wp-hook.php:310
130.27397748496preg_replace_callback ( ).../shortcodes.php:273
140.27397749120do_shortcode_tag( ).../shortcodes.php:273
150.27397749120bicluster_info_shortcode( ).../shortcodes.php:433
( ! ) Notice: Trying to get property 'id' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 669
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17457193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17797197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27147718072get_template_part( ).../page.php:28
60.27147718648locate_template( ).../general-template.php:206
70.27157718776load_template( ).../template.php:720
80.27157719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27247736264the_content( ).../content-page.php:22
100.27267736512apply_filters( ).../post-template.php:256
110.27267736912WP_Hook->apply_filters( ).../plugin.php:205
120.27387742440do_shortcode( ).../class-wp-hook.php:310
130.27397748496preg_replace_callback ( ).../shortcodes.php:273
140.27397749120do_shortcode_tag( ).../shortcodes.php:273
150.27397749120bicluster_info_shortcode( ).../shortcodes.php:433
( ! ) Notice: Trying to get property 'num_conditions' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 670
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17457193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17797197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27147718072get_template_part( ).../page.php:28
60.27147718648locate_template( ).../general-template.php:206
70.27157718776load_template( ).../template.php:720
80.27157719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27247736264the_content( ).../content-page.php:22
100.27267736512apply_filters( ).../post-template.php:256
110.27267736912WP_Hook->apply_filters( ).../plugin.php:205
120.27387742440do_shortcode( ).../class-wp-hook.php:310
130.27397748496preg_replace_callback ( ).../shortcodes.php:273
140.27397749120do_shortcode_tag( ).../shortcodes.php:273
150.27397749120bicluster_info_shortcode( ).../shortcodes.php:433
( ! ) Notice: Trying to get property 'num_genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 671
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17457193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17797197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27147718072get_template_part( ).../page.php:28
60.27147718648locate_template( ).../general-template.php:206
70.27157718776load_template( ).../template.php:720
80.27157719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27247736264the_content( ).../content-page.php:22
100.27267736512apply_filters( ).../post-template.php:256
110.27267736912WP_Hook->apply_filters( ).../plugin.php:205
120.27387742440do_shortcode( ).../class-wp-hook.php:310
130.27397748496preg_replace_callback ( ).../shortcodes.php:273
140.27397749120do_shortcode_tag( ).../shortcodes.php:273
150.27397749120bicluster_info_shortcode( ).../shortcodes.php:433
( ! ) Notice: Trying to get property 'residual' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 672
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.17457193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.17797197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.27147718072get_template_part( ).../page.php:28
60.27147718648locate_template( ).../general-template.php:206
70.27157718776load_template( ).../template.php:720
80.27157719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.27247736264the_content( ).../content-page.php:22
100.27267736512apply_filters( ).../post-template.php:256
110.27267736912WP_Hook->apply_filters( ).../plugin.php:205
120.27387742440do_shortcode( ).../class-wp-hook.php:310
130.27397748496preg_replace_callback ( ).../shortcodes.php:273
140.27397749120do_shortcode_tag( ).../shortcodes.php:273
150.27397749120bicluster_info_shortcode( ).../shortcodes.php:433
ID:
# Conditions:
# Genes:
Residual:

Bicluster Motifs

Bicluster Genes

  • Rv0119
  • Rv0332
  • Rv0362
  • Rv0506
  • Rv0794c
  • Rv0835
  • Rv1167c
  • Rv1509
  • Rv1681
  • Rv2021c
  • Rv2022c
  • Rv2075c
  • Rv2132
  • Rv2285
  • Rv2599
  • Rv2887
  • Rv2987c
  • Rv3193c
  • Rv3405c
  • Rv3463
  • Rv3521
  • Rv3705c
  • Rv3876
  • Rv3913

Bicluster Conditions

  • MTB.strain.1254.Ctrl.vs.high.aeration.rep1
  • MTB.strain.1254.Ctrl.vs.high.aeration.rep2
  • MTB.strain.1254.Ctrl.vs.high.aeration.rep3
  • Mtm.0.2ug.mL.vs.ctrl.8h.1.x
  • Mtm.0.2ug.mL.vs.ctrl.8h.2.x
  • Mtm.0.2ug.mL.vs.ctrl.12h.1.x
  • X20ug.ml.KCN.vs.DMSO.6hrs.x
  • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
  • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
  • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
  • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
  • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
  • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
  • aceatate.induction.1
  • aceatate.induction.2
  • Acetate.3mM.10m.03
  • Acetate.3mM.10m.05
  • Acetate.3mM.10m_04
  • Acetate.3mM.2h.02
  • Acetate.3mM.2h.05
  • Acetate.3mM.2h.06
  • Acetate.3mM.30m.02
  • Acetate.3mM.30m.03
  • Acetate.3mM.30m.04
  • Acetate.3mM.30m.06
  • Acetate.3mM.30m.08
  • Acetate.3mM.60m.01
  • Acetate.3mM.60m.02
  • Acetate.3mM.60m.04
  • Starvation_1254_12h_01
  • Starvation_1254_12h_02
  • Starvation_1254_12h_04
  • Starvation_1254_24h_01
  • Starvation_1254_24h_04
  • Starvation_1254_24h_07
  • Starvation_1254_5d_01
  • Starvation_1254_6h_01
  • Starvation_1254_6h_04
  • Starvation_1254_6h_05
  • H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.1
  • H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.2
  • H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3
  • Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
  • H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
  • H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
  • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
  • H37Rv.reaeration.for.1hrs.rep.5
  • H37Rv.reaeration.for.1hrs.rep.6
  • H37Rv.reaeration.for.4hrs.rep.5
  • H37Rv.reaeration.for.4hrs.rep.6
  • H37Rv.reaeration.for.4hrs.rep.7
  • H37Rv.reaeration.for.6hrs.rep.2
  • H37Rv.reaeration.for.6hrs.rep.3
  • H37Rv.reaeration.for.6hrs.rep.4
  • H37Rv.reaeration.for.12hrs.rep.1
  • H37Rv.reaeration.for.12hrs.rep.3
  • H37Rv.reaeration.for.12hrs.rep.5
  • H37Rv.reaeration.for.12hrs.rep.6
  • H37Rv.reaeration.for.24hrs.rep.1
  • H37Rv.reaeration.for.24hrs.rep.4
  • BCG.24hr.phagosomal.profile
  • M..tuberculosis.CDC1551.2hr.phagosome.expression.profile
  • MTB.in.Wild.type.macrophages.for.24hrs
  • MTB.in.Wild.type.macrophages...IFNg.for.4hrs
  • MTB.in.Wild.type.macrophages...IFNg.for.24hrs
  • MTB.in.Wild.type.macrophages...IFNg.for.48hrs
  • Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
  • Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
  • Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
  • Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
  • Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
  • Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
  • MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.1
  • MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.2
  • MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.3
  • X0.1mMGSNO.5ug.mLKCNvsDMSO.6h
  • X0.1mMGSNO.5ug.mLKCNvsDMSO.6h.A
  • X10ug.mL.EconazolevsEtOH..6hA
  • X10ug.mLchlorpromazinevsctrl.6h
  • X10ug.mLchlorpromazinevsctrl.6hA
  • X60ug.mL.ChlorprovsEtOH..6h
  • X10ug.mL.ClotrimvsEtOH..6hA
  • X10ug.mL.clotrimvsEtOH..6h
  • X24ug.mL.cltrmazole.DMS..6h..1
  • X24ug.mL.cltrmazole.DMS..6h..2
  • X24ug.mL.cltrmazole.DMS..6h..3
  • X50uM.CCCP.DMSO..6h..2
  • X50uM.CCCPvsDMSO..6h
  • X0.5mM.DNP.DMSO..6h
  • X1mM.DNP.DMSO..6h..1
  • X1mM.DNP.DMSO..6h..2
  • X2.5mM.Dinitrophenol.DMSO..6h
  • X20uM.DCCD.DMSO..6h..1
  • X20uM.DCCD.DMSO..6h..2
  • X100uM.DCCD.DMSO..6h
  • X2mM.DTTvsDMSO..6h
  • X5ug.mL.KCN.DMSO..6h..1
  • X5ug.mL.KCN.DMSO..6h..2
  • X20ug.mL.KCN.DMSO..6h
  • X50ug.mL.Thioridazine.DMSO..6h
  • X20ug.ml.KCN.vs.DMSO.6hrs.y
  • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.1
  • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.2
  • CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.2
  • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.1
  • CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.2
  • CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.2
  • CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.1
  • CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.2