Bicluster – MTB EGRIN 2.0

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Call Stack
#	Time	Memory	Function	Location
1	0.0000	399816	{main}( )	.../index.php:0
2	0.0001	400096	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1843	7195104	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1895	7198848	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2957	7719608	get_template_part( )	.../page.php:28
6	0.2957	7720184	locate_template( )	.../general-template.php:206
7	0.2958	7720312	load_template( )	.../template.php:720
8	0.2958	7720624	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2971	7737800	the_content( )	.../content-page.php:22
10	0.2974	7738048	apply_filters( )	.../post-template.php:256
11	0.2974	7738448	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2988	7743976	do_shortcode( )	.../class-wp-hook.php:310
13	0.2989	7750032	preg_replace_callback ( )	.../shortcodes.php:273
14	1.0475	7750992	do_shortcode_tag( )	.../shortcodes.php:273
15	1.0476	7750992	bicluster_motifs_shortcode( )	.../shortcodes.php:433
16	1.0477	7751120	file_get_contents ( )	.../short_codes.php:74

ID: 552fc51fb744335b89d8b32e
# Conditions: 118
# Genes: 18
Residual: 0.41431671318181

Bicluster Motifs

Bicluster Genes

Rv0037c
Rv0292
Rv0577
Rv0958
Rv0992c
Rv1459c
Rv2207
Rv2523c
Rv2535c
Rv2726c
Rv2753c
Rv2921c
Rv3285
Rv3356c
Rv3384c
Rv3441c
Rv3673c
Rv3908

Bicluster Conditions

H37Rv.hypoxia.2hr.rep.1
H37Rv.hypoxia.2hr.rep.3
H37Rv.hypoxia.2hr.rep.5
NRP.Day10..2
NRP.Day12..2
NRP.Day14..3
NRP.Day14..4
NRP.Day14..7
NRP.Day14..8
NRP.Day20..1
NRP.Day20..2
H37Rv.hypoxia.4hr.rep.4
SG2.A0_N02A01c3
SG6.G0_N5A02cy.5
SG6_B0_N7A10cy.5
SG7.AT0_N11A01cy.5
SG7.BT0_N11A02cy.5
SG8.A.Day.0.pre_fix_N37A04cy.5
SG8.B.Day.0.pre_N37A12cy.3
SG8.C.Day.0.post_N27A08cy.3
SG8.C.Day.0.pre_N27A07cy.3
SG8.D.Day.0.pre_N27A10cy.3
SG8.C.Day.0.post_N37A10cy.5
SG8.D.Day.0.post_N27A11cy.3
SG.ISB.3.0A_N30A01cy.3
SG.ISB.3.0B_N30A01cy.5
SG.ISB.3.0C_N30A02cy.3
SG8.C.Day.1_N27A09cy.3
SG8.D.Day.1_N27A12cy.3
SG8.B.Day.1_N37A05cy.5
SG8.A.Day.1_fix_N37A03cy.5
SG7.DT1_N11A08cy.5
SG7.CT1_N11A07cy.5
SG7.BT1_N11A06cy.5
SG6_B1_N7A11cy.5
SG6.D1_N5A05cy.5
SG6.C1_N5A04cy.5
SG2.A1_N02A02c3
SG2.A2_N02A03c3
SG2.B2_N02A11c3
SG2.D2_N02A03c5
SG2.A3_N02A04c3
SG2.B3_N02A12c3
SG2.D3_N02A04c5
SG8.A.Day.5_N37A10cy.3
SG2.A5_N02A05c3
SG2.B5_N02A09c5
SG2.D5_N02A05c5
SG2.D7_N02A06c5
SG2.B7_N02A10c5
SG2.A7_N02A06c3
SG6C.T7_N11A01cy.3
SG6_B7_N7A12cy.5
SG6_A7_N7A12cy.3
SG7.T7B_N11A09cy.5
SG7.T7C_N11A10cy.5
SG7.T7D_N11A11cy.5
SG8.A.Day.7_N37A11cy.3
SG.ISB.3.7B_N30A03cy.3
SG.ISB.3.7C_N30A03cy.5
SG12.B2_N32A11cy.3
SG12.B4_N32A12cy.3
SG12.C4_N32A08cy.5
SG12.C6_N32A09cy.5
SG12.A8_N32A06cy.3
SG12.B8_N32A02cy.5
SG12.C24_N32A11cy.5
SG12.B24_N32A03cy.5
SG12.A24_N32A07cy.3
SG2.A8_N02A07c3
SG2.B8_N02A11c5
SG2.D8_N02A07c5
SG6.B8_N5A07cy.5
SG6.A8_N5A06cy.5
SG7.T8C_N11A07cy.3
SG7.T8B_N11A06cy.3
SG7.T8A_N11A05cy.3
SG7.T8D_N11A08cy.3
SG.ISB.3.8A_N30A04cy.5
SG.ISB.3.8C_N30A05cy.5
SG.ISB.3.8D_N30A06cy.3
SG2.A9_N02A08c3
SG2.B9_N02A12c5
SG2.D9_N02A08c5
SG6.C11_N5A12cy.5
SG6.A11_N5A10cy.5
SG7.T12D_N11A12cy.3
SG7.T12C_N11A11cy.3
SG7.T12B_N11A10cy.3
SG7.T12A_N11A09cy.3
SG12.C120_N32A12cy.5
SG12.B120_N32A04cy.5
SG12.A120_N32A08cy.3
SG.ISB.3.12A_N30A06cy.5
SG.ISB.3.12D_N30A08cy.3
SG6.A14_N8A10cy.5
SG6.B14_N8A11cy.5
SG6D.T14_N11A04cy.3
X40ug.mL.5CL.pH5.6..4h..1
X0.12mg.mL.BZA.pH5.6..4h..2
X0.12mg.mL.BZAvspH5.6..5h.
X0.12mg.mL.BZAvspH5.6..7h.
X0.12mg.mL.BZAvspH5.6..11h.
X0.12mg.mL.Nam.pH5.6..2h..2
X0.12mg.mL.Nam.pH5.6..4h..1
X0.12mg.mL.Nam.pH5.6..4h..2
X0.12mg.mL.NamvspH5.6..7h.
X1.2mg.mL.NamvspH5.6..5h.
X0.12mg.mL.PZA.pH5.6..2.5h.
X0.12mg.mL.PZA.pH5.6..4h..1
X0.12mg.mL.PZA.pH5.6..4h..2
X0.12mg.mL.PZAvspH5.6..4h.
X0.12mg.mL.PZAvspH5.6..5.5h.
X0.12mg.mL.PZAvspH5.6..6h.
X1.2mg.mL.PZAvspH5.6..4h.A
X1.2mg.mL.PZAvspH5.6..4h.B
X1.2mg.mL.PZAvspH5.6..10.5h.
X1.2mg.mL.PZAvspH5.6..16h.

Column members cluster 552fc51fb744335b89d8b32e Species (TODO)

H37Rv.hypoxia.2hr.rep.1
H37Rv.hypoxia.2hr.rep.3
H37Rv.hypoxia.2hr.rep.5
NRP.Day10..2
NRP.Day12..2
NRP.Day14..3
NRP.Day14..4
NRP.Day14..7
NRP.Day14..8
NRP.Day20..1
NRP.Day20..2
H37Rv.hypoxia.4hr.rep.4
SG2.A0_N02A01c3
SG6.G0_N5A02cy.5
SG6_B0_N7A10cy.5
SG7.AT0_N11A01cy.5
SG7.BT0_N11A02cy.5
SG8.A.Day.0.pre_fix_N37A04cy.5
SG8.B.Day.0.pre_N37A12cy.3
SG8.C.Day.0.post_N27A08cy.3
SG8.C.Day.0.pre_N27A07cy.3
SG8.D.Day.0.pre_N27A10cy.3
SG8.C.Day.0.post_N37A10cy.5
SG8.D.Day.0.post_N27A11cy.3
SG.ISB.3.0A_N30A01cy.3
SG.ISB.3.0B_N30A01cy.5
SG.ISB.3.0C_N30A02cy.3
SG8.C.Day.1_N27A09cy.3
SG8.D.Day.1_N27A12cy.3
SG8.B.Day.1_N37A05cy.5
SG8.A.Day.1_fix_N37A03cy.5
SG7.DT1_N11A08cy.5
SG7.CT1_N11A07cy.5
SG7.BT1_N11A06cy.5
SG6_B1_N7A11cy.5
SG6.D1_N5A05cy.5
SG6.C1_N5A04cy.5
SG2.A1_N02A02c3
SG2.A2_N02A03c3
SG2.B2_N02A11c3
SG2.D2_N02A03c5
SG2.A3_N02A04c3
SG2.B3_N02A12c3
SG2.D3_N02A04c5
SG8.A.Day.5_N37A10cy.3
SG2.A5_N02A05c3
SG2.B5_N02A09c5
SG2.D5_N02A05c5
SG2.D7_N02A06c5
SG2.B7_N02A10c5
SG2.A7_N02A06c3
SG6C.T7_N11A01cy.3
SG6_B7_N7A12cy.5
SG6_A7_N7A12cy.3
SG7.T7B_N11A09cy.5
SG7.T7C_N11A10cy.5
SG7.T7D_N11A11cy.5
SG8.A.Day.7_N37A11cy.3
SG.ISB.3.7B_N30A03cy.3
SG.ISB.3.7C_N30A03cy.5
SG12.B2_N32A11cy.3
SG12.B4_N32A12cy.3
SG12.C4_N32A08cy.5
SG12.C6_N32A09cy.5
SG12.A8_N32A06cy.3
SG12.B8_N32A02cy.5
SG12.C24_N32A11cy.5
SG12.B24_N32A03cy.5
SG12.A24_N32A07cy.3
SG2.A8_N02A07c3
SG2.B8_N02A11c5
SG2.D8_N02A07c5
SG6.B8_N5A07cy.5
SG6.A8_N5A06cy.5
SG7.T8C_N11A07cy.3
SG7.T8B_N11A06cy.3
SG7.T8A_N11A05cy.3
SG7.T8D_N11A08cy.3
SG.ISB.3.8A_N30A04cy.5
SG.ISB.3.8C_N30A05cy.5
SG.ISB.3.8D_N30A06cy.3
SG2.A9_N02A08c3
SG2.B9_N02A12c5
SG2.D9_N02A08c5
SG6.C11_N5A12cy.5
SG6.A11_N5A10cy.5
SG7.T12D_N11A12cy.3
SG7.T12C_N11A11cy.3
SG7.T12B_N11A10cy.3
SG7.T12A_N11A09cy.3
SG12.C120_N32A12cy.5
SG12.B120_N32A04cy.5
SG12.A120_N32A08cy.3
SG.ISB.3.12A_N30A06cy.5
SG.ISB.3.12D_N30A08cy.3
SG6.A14_N8A10cy.5
SG6.B14_N8A11cy.5
SG6D.T14_N11A04cy.3
X40ug.mL.5CL.pH5.6..4h..1
X0.12mg.mL.BZA.pH5.6..4h..2
X0.12mg.mL.BZAvspH5.6..5h.
X0.12mg.mL.BZAvspH5.6..7h.
X0.12mg.mL.BZAvspH5.6..11h.
X0.12mg.mL.Nam.pH5.6..2h..2
X0.12mg.mL.Nam.pH5.6..4h..1
X0.12mg.mL.Nam.pH5.6..4h..2
X0.12mg.mL.NamvspH5.6..7h.
X1.2mg.mL.NamvspH5.6..5h.
X0.12mg.mL.PZA.pH5.6..2.5h.
X0.12mg.mL.PZA.pH5.6..4h..1
X0.12mg.mL.PZA.pH5.6..4h..2
X0.12mg.mL.PZAvspH5.6..4h.
X0.12mg.mL.PZAvspH5.6..5.5h.
X0.12mg.mL.PZAvspH5.6..6h.
X1.2mg.mL.PZAvspH5.6..4h.A
X1.2mg.mL.PZAvspH5.6..4h.B
X1.2mg.mL.PZAvspH5.6..10.5h.
X1.2mg.mL.PZAvspH5.6..16h.