Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18497193904require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.18857197648include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28197734792get_template_part( ).../page.php:28
60.28197735368locate_template( ).../general-template.php:206
70.28197735496load_template( ).../template.php:720
80.28207735808require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28317736600the_content( ).../content-page.php:22
100.28327736848apply_filters( ).../post-template.php:256
110.28327737248WP_Hook->apply_filters( ).../plugin.php:205
120.28437742776do_shortcode( ).../class-wp-hook.php:310
130.28447748832preg_replace_callback ( ).../shortcodes.php:273
143.84327757752do_shortcode_tag( ).../shortcodes.php:273
153.84337758224bicluster_genes_shortcode( ).../shortcodes.php:433
163.84347758728file_get_contents ( ).../short_codes.php:15

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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18497193904require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.18857197648include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28197734792get_template_part( ).../page.php:28
60.28197735368locate_template( ).../general-template.php:206
70.28197735496load_template( ).../template.php:720
80.28207735808require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28317736600the_content( ).../content-page.php:22
100.28327736848apply_filters( ).../post-template.php:256
110.28327737248WP_Hook->apply_filters( ).../plugin.php:205
120.28437742776do_shortcode( ).../class-wp-hook.php:310
130.28447748832preg_replace_callback ( ).../shortcodes.php:273
143.84327757752do_shortcode_tag( ).../shortcodes.php:273
153.84337758224bicluster_genes_shortcode( ).../shortcodes.php:433

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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18497193904require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.18857197648include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28197734792get_template_part( ).../page.php:28
60.28197735368locate_template( ).../general-template.php:206
70.28197735496load_template( ).../template.php:720
80.28207735808require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28317736600the_content( ).../content-page.php:22
100.28327736848apply_filters( ).../post-template.php:256
110.28327737248WP_Hook->apply_filters( ).../plugin.php:205
120.28437742776do_shortcode( ).../class-wp-hook.php:310
130.28447748832preg_replace_callback ( ).../shortcodes.php:273
143.84327757752do_shortcode_tag( ).../shortcodes.php:273
153.84337758224bicluster_genes_shortcode( ).../shortcodes.php:433

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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.18497193904require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.18857197648include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.28197734792get_template_part( ).../page.php:28
60.28197735368locate_template( ).../general-template.php:206
70.28197735496load_template( ).../template.php:720
80.28207735808require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.28317736600the_content( ).../content-page.php:22
100.28327736848apply_filters( ).../post-template.php:256
110.28327737248WP_Hook->apply_filters( ).../plugin.php:205
120.28437742776do_shortcode( ).../class-wp-hook.php:310
130.28447748832preg_replace_callback ( ).../shortcodes.php:273
143.84327757752do_shortcode_tag( ).../shortcodes.php:273
153.84337758224bicluster_genes_shortcode( ).../shortcodes.php:433
ID: 552fc66bb744335b89d8bb21
# Conditions: 89
# Genes: 15
Residual: 0.53344864264724

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • Strain.CDC1551..replicate.2
    • Strain.CDC1551..replicate.3
    • Strain.CDC1551..replicate.4
    • Strain.1006...replicate.3
    • Strain.1006...replicate.4
    • Strain.1254...replicate.1
    • Strain.1843..replicate.1
    • Strain.1843...replicate.2
    • Strain.1843..replicate.4
    • Strain.3160..replicate.2
    • Strain.3160...replicate.3
    • Strain.9700665..replicate.4
    • Strain.9802826..replicate.1
    • Strain.9802826..replicate.2
    • Strain.9802826..replicate.3
    • Strain.9802826..replicate.4
    • Strain.M3061a..replicate.1
    • Strain.M3061a..replicate.2
    • Strain.M3061a..replicate.3
    • H37Rv.Vs.M.bovis.rep1
    • H37Rv.Vs.M.bovis.rep2
    • H37Rv.Vs.M.bovis.rep3
    • H37Rv.Vs.M.bovis.rep4
    • H37Rv.0.05..SDS.exposure.for.1h.rep.2
    • H37Rv.0.05..SDS.exposure.for.1h.rep.3
    • H37Rv.0.05..SDS.exposure.for.1h.rep.6
    • H37Rv.vs..H37Rv.SDS.treated.rep.3
    • H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
    • Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
    • Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
    • Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
    • Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
    • Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
    • Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.1
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.2
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.5
    • H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2
    • H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.4
    • H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.5
    • CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.1
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.1
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.2
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.1
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.3
    • WT_140mM_NaCl_Rep1
    • WT_140mM_NaCl_Rep2
    • WT_140mM_NaCl_Rep3
    • WT_140mM_NaCl_Rep4
    • hip.mutant.KL2801..biological.rep1
    • hip.mutant.KL2801..biological.rep2
    • hip.mutant.KL2825..biological.rep1
    • hip.mutant.KL2825..biological.rep2
    • hip.mutant.KL2849..biological.rep1
    • hip.mutant.KL2849..biological.rep2
    • hip.mutant.HTS1090..biological.rep1
    • hip.mutant.HTS1090..biological.rep2
    • hip.mutant.HTS1105..biological.rep1
    • hip.mutant.HT1116..biological.rep2
    • hip.mutant.HT1117..biological.rep2
    • hip.mutant.HT1120..biological.rep1
    • hip.mutant.HT1120..biological.rep2
    • hip.mutant.HT1130..biological.rep2
    • hip.mutant.HT1134..biological.rep1
    • hip.mutant.HT1134..biological.rep2
    • hip.mutant.HT1137..biological.rep1
    • hip.mutant.HT1137..biological.rep2
    • hip.mutant.HT1170..biological.rep2