Bicluster – MTB EGRIN 2.0

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Call Stack
#	Time	Memory	Function	Location
1	0.0000	399816	{main}( )	.../index.php:0
2	0.0001	400096	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1980	7195104	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.2029	7198848	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.3811	7719608	get_template_part( )	.../page.php:28
6	0.3811	7720184	locate_template( )	.../general-template.php:206
7	0.3811	7720312	load_template( )	.../template.php:720
8	0.3812	7720624	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.3826	7737800	the_content( )	.../content-page.php:22
10	0.3829	7738048	apply_filters( )	.../post-template.php:256
11	0.3829	7738448	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.3845	7743976	do_shortcode( )	.../class-wp-hook.php:310
13	0.3847	7750032	preg_replace_callback ( )	.../shortcodes.php:273
14	1.4786	7750992	do_shortcode_tag( )	.../shortcodes.php:273
15	1.4786	7750992	bicluster_motifs_shortcode( )	.../shortcodes.php:433
16	1.4788	7751120	file_get_contents ( )	.../short_codes.php:74

ID: 552fc823b744335b89d8c617
# Conditions: 264
# Genes: 22
Residual: 0.4964590347358

Bicluster Motifs

Bicluster Genes

Rv0144
Rv0346c
Rv0498
Rv0690c
Rv0691c
Rv0694
Rv0936
Rv1155
Rv1262c
Rv1444c
Rv1446c
Rv1448c
Rv1538c
Rv2215
Rv2216
Rv2217
Rv2218
Rv2796c
Rv2984
Rv3594
Rv3752c
Rv3772

Bicluster Conditions

High.iron.wt.vs.low.iron.wt.1a
High.iron.wt.vs.low.iron.wt.1b
High.iron.wt.vs.low.iron.wt.2a
High.iron.wt.vs.low.iron.wt.2b
High.iron.wt.vs.low.iron.wt.3a
High.iron.wt.vs.low.iron.wt.3b
Whole.Lung.Surfactant.30min.rep.1
Whole.Lung.Surfactant.30min.rep.2
Whole.Lung.Surfactant.30min.rep.3
Whole.Lung.Surfactant.30min.rep.4
Whole.Lung.Surfactant.30min.rep.5
Extracted.Lung.Surfactant.2hrs.rep.1
Extracted.Lung.Surfactant.2hrs.rep.2
Extracted.Lung.Surfactant.30min.rep.1
Extracted.Lung.Surfactant.30min.rep.2
Extracted.Lung.Surfactant.30min.rep.4
Purified.Surfactant.Lipids.2hrs.rep.1
Purified.Surfactant.Lipids.2hrs.rep.2
Purified.Surfactant.Lipids.30min.rep.1
Purified.Human.SP.A.Coated.2hrs.rep1
Purified.Human.SP.A.Coated.2hrs.rep2
Purified.Human.SP.A.Uncoated.2hrs.rep2
Purified.Human.SP.A.Uncoated.2hrs.rep3
Purified.Human.SP.A.Uncoated.2hrs.rep4
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
AA_10uM_10.min_01
AA_10uM_10min_01
AA_30uM_10.min_05
AA_30uM_10.min_06
AA_30uM_10m_01
AA_30uM_10min_02
AA_30uM_10min_03
AA_30uM_1h_01
AA_30uM_1h_02
AA_30uM_1h_06
AA_30uM_24h_02
AA_30uM_24h_03
AA_30uM_24h_04
AA_30uM_2h_04
AA_30uM_2h_06
AA_30uM_2h_09
AA_30uM_30min_01
AA_30uM_30min_02
AA_30uM_30min_03
AA_30uM_30min_05
AA_30uM_30min_06
AA_30uM_30min_07
AA_30uM_30min_08
AA_30uM_30min_09
AA_30uM_4h_03
AA_30uM_4h_05
AA_30uM_4h_07
AA_30uM_4h_08
AA_3uM_10.min_01
AA_60uM_24h_01
AA_60uM_24h_02
AA_60uM_24h_03
L2A_30uM_10min_01
L2A_30uM_10min_04
L2A_30uM_10min_06
L2A_30uM_10min_07
L2A_30uM_1h_01
L2A_30uM_1h_02
L2A_30uM_1h_03
L2A_30uM_1h_04
L2A_30uM_1h_06
L2A_30uM_1h_07
L2A_30uM_1h_08
L2A_30uM_1h_09
L2A_30uM_2h_02
L2A_30uM_30min_01
L2A_30uM_30min_03
L2A_30uM_30min_04
L2A_30uM_30Min_06
L2A_30uM_30min_07
L2A_30uM_4h_03
L2A_30uM_4h_04
L2A_30uM_4h_06
L2A_30uM_4h_08
LAA_50uM_10min_02
OA_50uM_10min_02
OA_50uM_10min_03
OA_50uM_10min_04
OA_50uM_10min_05
OA_50uM_10min_07
OA_50uM_10min_08
OA_50uM_1h_01
OA_50uM_1h_02
OA_50uM_1h_03
OA_50uM_1h_04
OA_50uM_1h_06
OA_50uM_1h_08
OA_50uM_1h_09
OA_50uM_1h_10
OA_50uM_24h_01
OA_50uM_24h_03
OA_50uM_24h_04
OA_50uM_24h_05
OA_50uM_24h_06
OA_50uM_2h_01
OA_50uM_2h_05
OA_50uM_2h_09
OA_50uM_30min_01
OA_50uM_30min_03
OA_50uM_30min_07
OA_50uM_30min_08
OA_50uM_30min_09
OA_50uM_4h_03
OA_50uM_4h_05
OA_50uM_4h_07
OA_50uM_4h_08
OA_50uM_4h_09
PA_100uM_24h_01
PA_100uM_2h_04
PA_50uM_10.min_02
PA_50uM_10.min_03
PA_50uM_10min_06
PA_50uM_10min_07
PA_50uM_10min_10
PA_50uM_12h_02
PA_50uM_12h_03
PA_50uM_12h_04
PA_50uM_12h_06
PA_50uM_1h_01
PA_50uM_1h_04
PA_50uM_1h_07
PA_50uM_1h_08
PA_50uM_1h_09
PA_50uM_1h_11
PA_50uM_1h_12
PA_50uM_24h_01
PA_50uM_24h_02
PA_50uM_24h_03
PA_50uM_24h_04
PA_50uM_24h_06
PA_50uM_24h_08
PA_50uM_24h_10
PA_50uM_2h_02
PA_50uM_2h_04
PA_50uM_2h_08
PA_50uM_30.min_04
PA_50uM_30.min_06
PA_50uM_30.min_07
PA_50uM_30min_02
PA_50uM_30min_03
PA_50uM_30min_09
PA_50uM_30min_10
PA_50uM_3d_02
PA_50uM_3d_03
PA_50uM_3d_04
PA_50uM_3d_05
PA_50uM_3d_06
PA_50uM_4h_02
PA_50uM_4h_07
PA_50uM_8h_01
PA_50uM_8h_02
PA_50uM_8h_04
PA_50uM_8h_05
PA_50uM_8h_06
H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3
H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.1
H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2
H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.3
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
BCG.2hr.phagosomal.profile
BCG.24hr.phagosomal.profile
M..tuberculosis.CDC1551.2hr.phagosome.expression.profile
MTB.in.Wild.type.macrophages.for.4hrs
MTB.in.Wild.type.macrophages.for.24hrs
MTB.in.Wild.type.macrophages.for.48hrs
MTB.in.Wild.type.macrophages...IFNg.for.4hrs
Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
X10ug.mL..59.DMSO..6h
X10ug.mL..59vsDMSO..6hA
X10ug.mL..109.DMSO..6h
X1ug.mL..241vsDMSO..6h
X10ug.mL..241.DMSO..6h
X.241..0.1ug.mL..DMSO..12h..1..GEO.acc.GSM28046.
X.241..10ug.mL..DMSO..12h..1
X40ug.mL.5CL.pH5.6..2h..1
X40ug.mL.5CL.pH5.6..4h..3
X80ug.mL.5CL.pH5.6..2h.
X0.12mg.mL.Nam.pH5.6..2h..2
X0.12mg.mL.NamvspH5.6..5.5h.
X0.12mg.mL.NamvspH5.6..7h.
X0.12mg.mL.PZAvspH5.6..5.5h.
X1.2mg.mL.PZA.pH5.6..2h..
X1.2mg.mL.PZAvspH5.6..7h.A
X1.2mg.mL.PZAvspH5.6..16h.
DIPED.50ug.mL.vs.DMSO.12h.1
DIPED..100ug.mL..DMSO..12h..3
X0.1mg.mL.TriclosanvsEtOH..6h
X0.1mg.mLTriclosanvsEtOH.6hB
X0.15mg.mL.TricvsEtOH..6h
X10ug.mL.TriclosanvsDMSO..6hA
X10ug.mL.TriclosanvsDMSO..6hB
X10ug.mL.TriclosanvsDMSO..6hC
X100ug.mL.TriclosanvsEtOH..6hA
X20ug.mL.ethambutol.DMSO
X0.2mg.mL.AmpvsEtOH..6h
X0.2mg.mL.AmpvsEtOH..6hA
X0.2mg.mL.AmpvsEtOH..6hB
X0.5ug.mL.CervsEtOH..6h
X0.5ug.mL.CervsEtOH..6hA
X20ug.mL.Cephalexin.Ctrl..6h..1
X20ug.mL.Cephalexin.Ctrl..6h..2
X100ug.mL.Ceph.DMSO..6h
X100ug.mLCephalexinvsEtOH.6hA
X130ug.mL.TLMvsDMSO..6h
X130ug.mL.TLMvsDMSO..6hA
X0.13mg.mL.TLMvsDMSO..6hA
X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3.x
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.x
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1
X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.2
X130ug.ml.TLM.vs.DMSO.6hrs.rep.1
X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1
X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.2
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.4
X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.1
X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.2
X0.2mg.ml.Ampicillin.vs.Ethanol.6hrs
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.y
H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.1
H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.2
H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.3
H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.2
H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.1
H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.2
H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2

Column members cluster 552fc823b744335b89d8c617 Species (TODO)

High.iron.wt.vs.low.iron.wt.1a
High.iron.wt.vs.low.iron.wt.1b
High.iron.wt.vs.low.iron.wt.2a
High.iron.wt.vs.low.iron.wt.2b
High.iron.wt.vs.low.iron.wt.3a
High.iron.wt.vs.low.iron.wt.3b
Whole.Lung.Surfactant.30min.rep.1
Whole.Lung.Surfactant.30min.rep.2
Whole.Lung.Surfactant.30min.rep.3
Whole.Lung.Surfactant.30min.rep.4
Whole.Lung.Surfactant.30min.rep.5
Extracted.Lung.Surfactant.2hrs.rep.1
Extracted.Lung.Surfactant.2hrs.rep.2
Extracted.Lung.Surfactant.30min.rep.1
Extracted.Lung.Surfactant.30min.rep.2
Extracted.Lung.Surfactant.30min.rep.4
Purified.Surfactant.Lipids.2hrs.rep.1
Purified.Surfactant.Lipids.2hrs.rep.2
Purified.Surfactant.Lipids.30min.rep.1
Purified.Human.SP.A.Coated.2hrs.rep1
Purified.Human.SP.A.Coated.2hrs.rep2
Purified.Human.SP.A.Uncoated.2hrs.rep2
Purified.Human.SP.A.Uncoated.2hrs.rep3
Purified.Human.SP.A.Uncoated.2hrs.rep4
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
AA_10uM_10.min_01
AA_10uM_10min_01
AA_30uM_10.min_05
AA_30uM_10.min_06
AA_30uM_10m_01
AA_30uM_10min_02
AA_30uM_10min_03
AA_30uM_1h_01
AA_30uM_1h_02
AA_30uM_1h_06
AA_30uM_24h_02
AA_30uM_24h_03
AA_30uM_24h_04
AA_30uM_2h_04
AA_30uM_2h_06
AA_30uM_2h_09
AA_30uM_30min_01
AA_30uM_30min_02
AA_30uM_30min_03
AA_30uM_30min_05
AA_30uM_30min_06
AA_30uM_30min_07
AA_30uM_30min_08
AA_30uM_30min_09
AA_30uM_4h_03
AA_30uM_4h_05
AA_30uM_4h_07
AA_30uM_4h_08
AA_3uM_10.min_01
AA_60uM_24h_01
AA_60uM_24h_02
AA_60uM_24h_03
L2A_30uM_10min_01
L2A_30uM_10min_04
L2A_30uM_10min_06
L2A_30uM_10min_07
L2A_30uM_1h_01
L2A_30uM_1h_02
L2A_30uM_1h_03
L2A_30uM_1h_04
L2A_30uM_1h_06
L2A_30uM_1h_07
L2A_30uM_1h_08
L2A_30uM_1h_09
L2A_30uM_2h_02
L2A_30uM_30min_01
L2A_30uM_30min_03
L2A_30uM_30min_04
L2A_30uM_30Min_06
L2A_30uM_30min_07
L2A_30uM_4h_03
L2A_30uM_4h_04
L2A_30uM_4h_06
L2A_30uM_4h_08
LAA_50uM_10min_02
OA_50uM_10min_02
OA_50uM_10min_03
OA_50uM_10min_04
OA_50uM_10min_05
OA_50uM_10min_07
OA_50uM_10min_08
OA_50uM_1h_01
OA_50uM_1h_02
OA_50uM_1h_03
OA_50uM_1h_04
OA_50uM_1h_06
OA_50uM_1h_08
OA_50uM_1h_09
OA_50uM_1h_10
OA_50uM_24h_01
OA_50uM_24h_03
OA_50uM_24h_04
OA_50uM_24h_05
OA_50uM_24h_06
OA_50uM_2h_01
OA_50uM_2h_05
OA_50uM_2h_09
OA_50uM_30min_01
OA_50uM_30min_03
OA_50uM_30min_07
OA_50uM_30min_08
OA_50uM_30min_09
OA_50uM_4h_03
OA_50uM_4h_05
OA_50uM_4h_07
OA_50uM_4h_08
OA_50uM_4h_09
PA_100uM_24h_01
PA_100uM_2h_04
PA_50uM_10.min_02
PA_50uM_10.min_03
PA_50uM_10min_06
PA_50uM_10min_07
PA_50uM_10min_10
PA_50uM_12h_02
PA_50uM_12h_03
PA_50uM_12h_04
PA_50uM_12h_06
PA_50uM_1h_01
PA_50uM_1h_04
PA_50uM_1h_07
PA_50uM_1h_08
PA_50uM_1h_09
PA_50uM_1h_11
PA_50uM_1h_12
PA_50uM_24h_01
PA_50uM_24h_02
PA_50uM_24h_03
PA_50uM_24h_04
PA_50uM_24h_06
PA_50uM_24h_08
PA_50uM_24h_10
PA_50uM_2h_02
PA_50uM_2h_04
PA_50uM_2h_08
PA_50uM_30.min_04
PA_50uM_30.min_06
PA_50uM_30.min_07
PA_50uM_30min_02
PA_50uM_30min_03
PA_50uM_30min_09
PA_50uM_30min_10
PA_50uM_3d_02
PA_50uM_3d_03
PA_50uM_3d_04
PA_50uM_3d_05
PA_50uM_3d_06
PA_50uM_4h_02
PA_50uM_4h_07
PA_50uM_8h_01
PA_50uM_8h_02
PA_50uM_8h_04
PA_50uM_8h_05
PA_50uM_8h_06
H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3
H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.1
H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2
H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.3
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
BCG.2hr.phagosomal.profile
BCG.24hr.phagosomal.profile
M..tuberculosis.CDC1551.2hr.phagosome.expression.profile
MTB.in.Wild.type.macrophages.for.4hrs
MTB.in.Wild.type.macrophages.for.24hrs
MTB.in.Wild.type.macrophages.for.48hrs
MTB.in.Wild.type.macrophages...IFNg.for.4hrs
Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
X10ug.mL..59.DMSO..6h
X10ug.mL..59vsDMSO..6hA
X10ug.mL..109.DMSO..6h
X1ug.mL..241vsDMSO..6h
X10ug.mL..241.DMSO..6h
X.241..0.1ug.mL..DMSO..12h..1..GEO.acc.GSM28046.
X.241..10ug.mL..DMSO..12h..1
X40ug.mL.5CL.pH5.6..2h..1
X40ug.mL.5CL.pH5.6..4h..3
X80ug.mL.5CL.pH5.6..2h.
X0.12mg.mL.Nam.pH5.6..2h..2
X0.12mg.mL.NamvspH5.6..5.5h.
X0.12mg.mL.NamvspH5.6..7h.
X0.12mg.mL.PZAvspH5.6..5.5h.
X1.2mg.mL.PZA.pH5.6..2h..
X1.2mg.mL.PZAvspH5.6..7h.A
X1.2mg.mL.PZAvspH5.6..16h.
DIPED.50ug.mL.vs.DMSO.12h.1
DIPED..100ug.mL..DMSO..12h..3
X0.1mg.mL.TriclosanvsEtOH..6h
X0.1mg.mLTriclosanvsEtOH.6hB
X0.15mg.mL.TricvsEtOH..6h
X10ug.mL.TriclosanvsDMSO..6hA
X10ug.mL.TriclosanvsDMSO..6hB
X10ug.mL.TriclosanvsDMSO..6hC
X100ug.mL.TriclosanvsEtOH..6hA
X20ug.mL.ethambutol.DMSO
X0.2mg.mL.AmpvsEtOH..6h
X0.2mg.mL.AmpvsEtOH..6hA
X0.2mg.mL.AmpvsEtOH..6hB
X0.5ug.mL.CervsEtOH..6h
X0.5ug.mL.CervsEtOH..6hA
X20ug.mL.Cephalexin.Ctrl..6h..1
X20ug.mL.Cephalexin.Ctrl..6h..2
X100ug.mL.Ceph.DMSO..6h
X100ug.mLCephalexinvsEtOH.6hA
X130ug.mL.TLMvsDMSO..6h
X130ug.mL.TLMvsDMSO..6hA
X0.13mg.mL.TLMvsDMSO..6hA
X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3.x
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.x
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1
X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.2
X130ug.ml.TLM.vs.DMSO.6hrs.rep.1
X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1
X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.2
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.4
X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.1
X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.2
X0.2mg.ml.Ampicillin.vs.Ethanol.6hrs
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.y
H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.1
H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.2
H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.3
H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.2
H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.1
H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.2
H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2