Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0001398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.15347193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.15717197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.25237718072get_template_part( ).../page.php:28
60.25237718648locate_template( ).../general-template.php:206
70.25237718776load_template( ).../template.php:720
80.25247719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.25397736264the_content( ).../content-page.php:22
100.25437736512apply_filters( ).../post-template.php:256
110.25437736912WP_Hook->apply_filters( ).../plugin.php:205
120.25617742440do_shortcode( ).../class-wp-hook.php:310
130.25637748496preg_replace_callback ( ).../shortcodes.php:273
140.92397757416do_shortcode_tag( ).../shortcodes.php:273
150.92407757888bicluster_genes_shortcode( ).../shortcodes.php:433
160.92417758392file_get_contents ( ).../short_codes.php:15
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Call Stack
#TimeMemoryFunctionLocation
10.0001398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.15347193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.15717197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.25237718072get_template_part( ).../page.php:28
60.25237718648locate_template( ).../general-template.php:206
70.25237718776load_template( ).../template.php:720
80.25247719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.25397736264the_content( ).../content-page.php:22
100.25437736512apply_filters( ).../post-template.php:256
110.25437736912WP_Hook->apply_filters( ).../plugin.php:205
120.25617742440do_shortcode( ).../class-wp-hook.php:310
130.25637748496preg_replace_callback ( ).../shortcodes.php:273
140.92397757416do_shortcode_tag( ).../shortcodes.php:273
150.92407757888bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 18
Call Stack
#TimeMemoryFunctionLocation
10.0001398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.15347193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.15717197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.25237718072get_template_part( ).../page.php:28
60.25237718648locate_template( ).../general-template.php:206
70.25237718776load_template( ).../template.php:720
80.25247719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.25397736264the_content( ).../content-page.php:22
100.25437736512apply_filters( ).../post-template.php:256
110.25437736912WP_Hook->apply_filters( ).../plugin.php:205
120.25617742440do_shortcode( ).../class-wp-hook.php:310
130.25637748496preg_replace_callback ( ).../shortcodes.php:273
140.92397757416do_shortcode_tag( ).../shortcodes.php:273
150.92407757888bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 29
Call Stack
#TimeMemoryFunctionLocation
10.0001398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.15347193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.15717197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.25237718072get_template_part( ).../page.php:28
60.25237718648locate_template( ).../general-template.php:206
70.25237718776load_template( ).../template.php:720
80.25247719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.25397736264the_content( ).../content-page.php:22
100.25437736512apply_filters( ).../post-template.php:256
110.25437736912WP_Hook->apply_filters( ).../plugin.php:205
120.25617742440do_shortcode( ).../class-wp-hook.php:310
130.25637748496preg_replace_callback ( ).../shortcodes.php:273
140.92397757416do_shortcode_tag( ).../shortcodes.php:273
150.92407757888bicluster_genes_shortcode( ).../shortcodes.php:433
ID: 552fcaceb744335b89d8d4de
# Conditions: 137
# Genes: 8
Residual: 0.53279440572064

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • MTB.strain.1254.Ctrl.vs.high.aeration.rep2
    • MTB.strain.1254.Ctrl.vs.high.aeration.rep3
    • X5ug.ml.KCN.vs.DMSO.6hrs.rep.1.x
    • X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.x
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
    • H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.2
    • H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3
    • Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
    • H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
    • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
    • H37Rv.reaeration.for.1hrs.rep.4
    • H37Rv.reaeration.for.1hrs.rep.5
    • H37Rv.reaeration.for.1hrs.rep.6
    • H37Rv.reaeration.for.1hrs.rep.8
    • H37Rv.reaeration.for.4hrs.rep.1
    • H37Rv.reaeration.for.4hrs.rep.2
    • H37Rv.reaeration.for.4hrs.rep.3
    • H37Rv.reaeration.for.4hrs.rep.4
    • H37Rv.reaeration.for.4hrs.rep.6
    • H37Rv.reaeration.for.4hrs.rep.7
    • H37Rv.reaeration.for.4hrs.rep.8
    • H37Rv.reaeration.for.6hrs.rep.1
    • H37Rv.reaeration.for.6hrs.rep.2
    • H37Rv.reaeration.for.6hrs.rep.3
    • H37Rv.reaeration.for.6hrs.rep.4
    • H37Rv.reaeration.for.6hrs.rep.5
    • H37Rv.reaeration.for.12hrs.rep.2
    • H37Rv.reaeration.for.12hrs.rep.3
    • H37Rv.reaeration.for.12hrs.rep.4
    • H37Rv.reaeration.for.12hrs.rep.5
    • H37Rv.reaeration.for.12hrs.rep.6
    • H37Rv.reaeration.for.24hrs.rep.1
    • H37Rv.reaeration.for.24hrs.rep.2
    • H37Rv.reaeration.for.24hrs.rep.3
    • H37Rv.reaeration.for.24hrs.rep.4
    • H37Rv.reaeration.for.24hrs.rep.6
    • Mtb.Erdman.strain.20.ppm.CO.rep.1
    • Mtb.Erdman.strain.20.ppm.CO.rep.2
    • Mtb.Erdman.strain.200.ppm.CO.rep.1
    • Mtb.Erdman.strain.200.ppm.CO.rep.2
    • BCG.2hr.phagosomal.profile
    • BCG.24hr.phagosomal.profile
    • M..tuberculosis.CDC1551.2hr.phagosome.expression.profile
    • M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
    • MTB.in.Wild.type.macrophages...IFNg.for.4hrs
    • Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
    • Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
    • Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
    • Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
    • Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
    • Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
    • Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
    • Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
    • Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
    • Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
    • Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
    • MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.1
    • MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.3
    • MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.4
    • MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.1
    • MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.4
    • MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.4
    • MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.2
    • MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.4
    • MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.1
    • MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.2
    • MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.3
    • MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.2
    • MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.1
    • MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.2
    • MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.1
    • MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.4
    • MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.1
    • MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.4
    • MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.3
    • MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.4
    • MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.1
    • MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.3
    • MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.3
    • MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.1
    • MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.2
    • MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.4
    • MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.1
    • MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.3
    • MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.1
    • MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.3
    • MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.4
    • MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.4
    • MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.4
    • X5ug.mL.AmivsEtOH..6h
    • X10ug.mL.Amikacin.EtOH..6h
    • X10ug.mL.capreomycinvsEtOH..6h
    • X5ug.mL.KCN.DMSO..6h..2
    • X10ug.mL.RoxvsEtOH..6h
    • X10ug.mL.RoxvsEtOH..6hA
    • X30ug.mL.RoxvsEtOH..6h
    • X30ug.mL.RoxvsEtOH..6hA
    • X50ug.mL.RoxvsEtOH..6hA
    • X2ug.mL.SMvsEtOH..6h
    • X2ug.mL.SMvsEtOH..6hA
    • X5ug.mLStreptomycinvsEtOH.6h
    • X5ug.mL.TetvsEtOH..6h
    • X10ug.mL.TetvsEtOH..6h
    • X10ug.mL.TetvsEtOH..6hA
    • X5ug.ml.KCN.vs.DMSO.6hrs.rep.1.y
    • Tet_100uM_30M_01
    • Tet_20uM_30M_01
    • Tet_5ug_30M_01
    • X10ug.ml.capreomycin.vs.Ethanol..6hrs
    • X5ug.ml.Streptomycin.vs.Ethanol.6hrs