Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16577193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16897197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.26307718072get_template_part( ).../page.php:28
60.26307718648locate_template( ).../general-template.php:206
70.26307718776load_template( ).../template.php:720
80.26307719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.26387736264the_content( ).../content-page.php:22
100.26407736512apply_filters( ).../post-template.php:256
110.26407736912WP_Hook->apply_filters( ).../plugin.php:205
120.26547742440do_shortcode( ).../class-wp-hook.php:310
130.26567748496preg_replace_callback ( ).../shortcodes.php:273
141.74237753320do_shortcode_tag( ).../shortcodes.php:273
151.74237753792bicluster_genes_shortcode( ).../shortcodes.php:433
161.74247754296file_get_contents ( ).../short_codes.php:15
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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16577193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16897197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.26307718072get_template_part( ).../page.php:28
60.26307718648locate_template( ).../general-template.php:206
70.26307718776load_template( ).../template.php:720
80.26307719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.26387736264the_content( ).../content-page.php:22
100.26407736512apply_filters( ).../post-template.php:256
110.26407736912WP_Hook->apply_filters( ).../plugin.php:205
120.26547742440do_shortcode( ).../class-wp-hook.php:310
130.26567748496preg_replace_callback ( ).../shortcodes.php:273
141.74237753320do_shortcode_tag( ).../shortcodes.php:273
151.74237753792bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 18
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16577193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16897197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.26307718072get_template_part( ).../page.php:28
60.26307718648locate_template( ).../general-template.php:206
70.26307718776load_template( ).../template.php:720
80.26307719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.26387736264the_content( ).../content-page.php:22
100.26407736512apply_filters( ).../post-template.php:256
110.26407736912WP_Hook->apply_filters( ).../plugin.php:205
120.26547742440do_shortcode( ).../class-wp-hook.php:310
130.26567748496preg_replace_callback ( ).../shortcodes.php:273
141.74237753320do_shortcode_tag( ).../shortcodes.php:273
151.74237753792bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 29
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.16577193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.16897197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.26307718072get_template_part( ).../page.php:28
60.26307718648locate_template( ).../general-template.php:206
70.26307718776load_template( ).../template.php:720
80.26307719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.26387736264the_content( ).../content-page.php:22
100.26407736512apply_filters( ).../post-template.php:256
110.26407736912WP_Hook->apply_filters( ).../plugin.php:205
120.26547742440do_shortcode( ).../class-wp-hook.php:310
130.26567748496preg_replace_callback ( ).../shortcodes.php:273
141.74237753320do_shortcode_tag( ).../shortcodes.php:273
151.74237753792bicluster_genes_shortcode( ).../shortcodes.php:433
ID: 552fd8e8b744335b89d92824
# Conditions: 106
# Genes: 21
Residual: 0.42473443393017

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • H37Rv.0.05..SDS.exposure.for.1h.rep.1
    • H37Rv.0.05..SDS.exposure.for.1h.rep.2
    • H37Rv.0.05..SDS.exposure.for.1h.rep.3
    • H37Rv.0.05..SDS.exposure.for.1h.rep.4
    • H37Rv.0.05..SDS.exposure.for.1h.rep.5
    • H37Rv.0.05..SDS.exposure.for.1h.rep.6
    • H37Rv.vs..H37Rv.SDS.treated.rep.2
    • H37Rv.vs..H37Rv.SDS.treated.rep.3
    • H37Rv.vs..H37Rv.SDS.treated.rep.5
    • H37Rv.vs..H37Rv.SDS.treated.rep.6
    • H37Rv.0.2..Oxygen..2h..4
    • H37Rv.0.2..Oxygen..2h..6
    • H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.1
    • H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.2
    • H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.4
    • X4mM.H2O2vsctrl..1h.
    • X4mM.H2O2vsctrl..2h.
    • X4mM.H2O2vsctrl..2h.A
    • X4mM.H2O2.ctrl..2h...1
    • X4mM.H2O2.ctrl..2h...2
    • X4mM.H2O2.ctrl..4h...1
    • X4mM.H2O2.ctrl..4h...2
    • X4mM.H2O2vsctrl..4h.
    • X4mM.H2O2vsctrl..4h.A
    • H2O2.4mM.vs.ctrl.8h.1
    • H2O2.4mM.vs.ctrl.12h.1
    • X25J.UV.ctrl..2h.
    • X25J.UVvs.ctrl..6h.
    • UV.40J.vs.ctrl.8h.1
    • X60J.UV.ctrl..2h.
    • X60J.UVvsctrl..6h.
    • UV.60J.vs.ctrl.6h.1
    • H37Rv.diamide.1h.rep.4
    • H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.5
    • H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.6
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
    • CHP_25uM_1h_01
    • CHP_25uM_24h_01
    • CHP_25uM_2h_01
    • MTB1254_SDS_90MIN_01
    • MTB1254_SDS_90MIN_02
    • MTB1254_SDS_90MIN_03
    • MTB1254_SDS_90MIN_04
    • SDS_3h_01
    • SDS_60min_01
    • Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
    • H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
    • H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
    • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
    • BCG.24hr.phagosomal.profile
    • M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
    • MTB.in.Wild.type.macrophages.for.4hrs
    • MTB.in.Wild.type.macrophages.for.24hrs
    • MTB.in.Wild.type.macrophages.for.48hrs
    • MTB.in.Wild.type.macrophages...IFNg.for.4hrs
    • MTB.in.Wild.type.macrophages...IFNg.for.24hrs
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.6
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.6
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.6
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.1
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.4
    • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.3
    • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.5
    • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.6
    • Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
    • Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
    • Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
    • Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
    • Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
    • Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
    • Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
    • Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
    • Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
    • Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
    • Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
    • Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
    • Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
    • A00436_Q3_t90_diamide
    • H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep.1
    • H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep2
    • H37Rv.Ctrl.vs.5.ug.ml.garlic.extract.6hrs
    • H37Rv.Ctrl.vs.10.ug.ml.garlic.extract.6hrs