Bicluster


( ! ) Warning: file_get_contents(https://mtb-egrin2.systemsbiology.net/api/api/v1.0.0/bicluster_genes/552fddd0b744335b89d94550): failed to open stream: HTTP request failed! HTTP/1.1 500 Internal Server Error in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 15
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.15507193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.15877197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.24777718072get_template_part( ).../page.php:28
60.24777718648locate_template( ).../general-template.php:206
70.24777718776load_template( ).../template.php:720
80.24787719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.24937736264the_content( ).../content-page.php:22
100.24967736512apply_filters( ).../post-template.php:256
110.24967736912WP_Hook->apply_filters( ).../plugin.php:205
120.25157742440do_shortcode( ).../class-wp-hook.php:310
130.25167748496preg_replace_callback ( ).../shortcodes.php:273
143.28737757416do_shortcode_tag( ).../shortcodes.php:273
153.28737757888bicluster_genes_shortcode( ).../shortcodes.php:433
163.28757758392file_get_contents ( ).../short_codes.php:15
( ! ) Notice: Trying to get property 'genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 16
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.15507193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.15877197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.24777718072get_template_part( ).../page.php:28
60.24777718648locate_template( ).../general-template.php:206
70.24777718776load_template( ).../template.php:720
80.24787719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.24937736264the_content( ).../content-page.php:22
100.24967736512apply_filters( ).../post-template.php:256
110.24967736912WP_Hook->apply_filters( ).../plugin.php:205
120.25157742440do_shortcode( ).../class-wp-hook.php:310
130.25167748496preg_replace_callback ( ).../shortcodes.php:273
143.28737757416do_shortcode_tag( ).../shortcodes.php:273
153.28737757888bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 18
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.15507193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.15877197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.24777718072get_template_part( ).../page.php:28
60.24777718648locate_template( ).../general-template.php:206
70.24777718776load_template( ).../template.php:720
80.24787719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.24937736264the_content( ).../content-page.php:22
100.24967736512apply_filters( ).../post-template.php:256
110.24967736912WP_Hook->apply_filters( ).../plugin.php:205
120.25157742440do_shortcode( ).../class-wp-hook.php:310
130.25167748496preg_replace_callback ( ).../shortcodes.php:273
143.28737757416do_shortcode_tag( ).../shortcodes.php:273
153.28737757888bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 29
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0001398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.15507193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.15877197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.24777718072get_template_part( ).../page.php:28
60.24777718648locate_template( ).../general-template.php:206
70.24777718776load_template( ).../template.php:720
80.24787719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.24937736264the_content( ).../content-page.php:22
100.24967736512apply_filters( ).../post-template.php:256
110.24967736912WP_Hook->apply_filters( ).../plugin.php:205
120.25157742440do_shortcode( ).../class-wp-hook.php:310
130.25167748496preg_replace_callback ( ).../shortcodes.php:273
143.28737757416do_shortcode_tag( ).../shortcodes.php:273
153.28737757888bicluster_genes_shortcode( ).../shortcodes.php:433
ID: 552fddd0b744335b89d94550
# Conditions: 166
# Genes: 18
Residual: 0.45922730439536

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • H37Rv..7H9.roll.replicate.2.x
    • H37Rv..7H9.shake.replicate.1
    • H37Rv..Dubos.media.replicate.3
    • H37Rv..Dubos.media.replicate.4
    • H37Rv..Youman.media.replicate.3
    • H37Rv..Youman.media.replicate.4
    • H37Rv..7H9.roll.replicate.2.y
    • Strain.CDC1551..replicate.2
    • Strain.CDC1551..replicate.3
    • Strain.1006...replicate.3
    • Strain.1254...replicate.4
    • Strain.1843..replicate.1
    • Strain.1843...replicate.3
    • Strain.1843..replicate.4
    • Strain.3160..replicate.2
    • Strain.9700665..replicate.2
    • Strain.9802501..replicate.3
    • Strain.M3061a..replicate.1
    • H37Rv.Day.0.rep.1
    • H37Rv.Vs.M.bovis.rep2
    • MTB1254.Day.0.rep.1
    • MTB1254.Day.0.rep.3
    • MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.1
    • MTB1254.vs..MTB1254.rep6
    • H37Rv.0.2..Oxygen..2h..1
    • H37Rv.0.2..Oxygen..2h..4
    • H37Rv.0.2..Oxygen..2h..5
    • H37Rv.0.2..Oxygen..2h..6
    • H37Rv.Day.0.rep.2
    • H37Rv.Day.0.rep.3
    • H37Rv.Day6.2
    • H37Rv.Day6.3
    • H37Rv.Day8.2
    • H37Rv.Day14.1
    • H37Rv.Day14.2
    • H37Rv.Day24.2
    • H37Rv.Day24.3
    • H37Rv.Day60.1
    • H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.1
    • H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.2
    • H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.3
    • H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.4
    • H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.5
    • H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.6
    • WT.t.6h.WT.t.0h..1
    • WT.t.0h.WT.t.6h..2
    • pH4.8vspH6.8..4h.
    • pH4.8vspH6.8..4h.B
    • pH4.8vspH6.8..4h.C
    • pH4.8vspH6.8..5h.
    • pH4.8vspH6.8..5.5h.
    • pH5.2vspH6.8..2h.
    • pH5.2vspH6.8..5h.
    • pH5.2vspH6.8..5.5h.
    • pH5.2vspH6.8..10.5h.
    • pH5.6vspH6.8..2h.
    • pH5.6vspH6.8..4h.B
    • pH5.6vspH6.8..5h.
    • pH5.6vspH6.8..7h.
    • pH5.6vspH6.8..16h.
    • Succinate.7H9.based.medium..1
    • Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
    • Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.1
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.2
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.4
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.5
    • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.6
    • aceatate.induction.1
    • aceatate.induction.3
    • Acetate.3mM.10m.01
    • Acetate.3mM.10m.02
    • Acetate.3mM.10m.03
    • Acetate.3mM.10m.05
    • Acetate.3mM.10m.06
    • Acetate.3mM.10m.07
    • Acetate.3mM.10m_04
    • Acetate.3mM.2h.01
    • Acetate.3mM.2h.02
    • Acetate.3mM.2h.03
    • Acetate.3mM.2h.04
    • Acetate.3mM.2h.05
    • Acetate.3mM.2h.06
    • Acetate.3mM.30m.02
    • Acetate.3mM.30m.03
    • Acetate.3mM.30m.05
    • Acetate.3mM.30m.06
    • Acetate.3mM.30m.07
    • Acetate.3mM.30m.08
    • Acetate.3mM.60m.01
    • Acetate.3mM.60m.02
    • Acetate.3mM.60m.03
    • Acetate.3mM.60m.04
    • Starvation_1254_12h_01
    • Starvation_1254_12h_02
    • Starvation_1254_12h_03
    • Starvation_1254_12h_04
    • Starvation_1254_24h_01
    • Starvation_1254_24h_02
    • Starvation_1254_24h_03
    • Starvation_1254_24h_04
    • Starvation_1254_24h_05
    • Starvation_1254_24h_06
    • Starvation_1254_24h_07
    • Starvation_1254_24h_08
    • Starvation_1254_3d_01
    • Starvation_1254_3d_02
    • Starvation_1254_3d_03
    • Starvation_1254_3d_04
    • Starvation_1254_5d_01
    • Starvation_1254_5d_02
    • Starvation_1254_5d_03
    • Starvation_1254_5d_04
    • Starvation_1254_6h_01
    • Starvation_1254_6h_02
    • Starvation_1254_6h_03
    • Starvation_1254_6h_04
    • Starvation_1254_6h_05
    • Starvation_1254_6h_06
    • Starvation_1254_6h_07
    • Starvation_1254_6h_08
    • CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.3
    • CDC1551.Ctrl.vs.H37Rv.rep.1
    • CDC1551.Ctrl.vs.H37Rv.rep.2
    • CDC1551.Ctrl.vs.H37Rv.rep.3
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.3
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.4
    • CDC1551.ctrl.vs.ctrl.at.0.hr.rep.1
    • SS_A1_RV.1
    • SS_A1_RV.2
    • SS_A1_RV.3
    • hip.mutant.KL2825..biological.rep1
    • hip.mutant.HTS1090..biological.rep2
    • hip.mutant.HTS1105..biological.rep1
    • hip.mutant.HT1117..biological.rep1
    • hip.mutant.HT1117..biological.rep2
    • hip.mutant.HT1120..biological.rep1
    • hip.mutant.HT1134..biological.rep2
    • H37Rv.Ctrl.vs.10.ug.ml.garlic.extract.6hrs