Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
31.06647193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
41.07197197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
51.61137718072get_template_part( ).../page.php:28
61.61137718648locate_template( ).../general-template.php:206
71.61137718776load_template( ).../template.php:720
81.61147719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
91.61267736264the_content( ).../content-page.php:22
101.61297736512apply_filters( ).../post-template.php:256
111.61297736912WP_Hook->apply_filters( ).../plugin.php:205
121.61447742440do_shortcode( ).../class-wp-hook.php:310
131.61457748496preg_replace_callback ( ).../shortcodes.php:273
141.61457749120do_shortcode_tag( ).../shortcodes.php:273
151.61467749120bicluster_info_shortcode( ).../shortcodes.php:433
161.61467749320file_get_contents ( ).../short_codes.php:666

( ! ) Notice: Trying to get property 'bicluster' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 667
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
31.06647193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
41.07197197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
51.61137718072get_template_part( ).../page.php:28
61.61137718648locate_template( ).../general-template.php:206
71.61137718776load_template( ).../template.php:720
81.61147719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
91.61267736264the_content( ).../content-page.php:22
101.61297736512apply_filters( ).../post-template.php:256
111.61297736912WP_Hook->apply_filters( ).../plugin.php:205
121.61447742440do_shortcode( ).../class-wp-hook.php:310
131.61457748496preg_replace_callback ( ).../shortcodes.php:273
141.61457749120do_shortcode_tag( ).../shortcodes.php:273
151.61467749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'id' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 669
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
31.06647193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
41.07197197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
51.61137718072get_template_part( ).../page.php:28
61.61137718648locate_template( ).../general-template.php:206
71.61137718776load_template( ).../template.php:720
81.61147719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
91.61267736264the_content( ).../content-page.php:22
101.61297736512apply_filters( ).../post-template.php:256
111.61297736912WP_Hook->apply_filters( ).../plugin.php:205
121.61447742440do_shortcode( ).../class-wp-hook.php:310
131.61457748496preg_replace_callback ( ).../shortcodes.php:273
141.61457749120do_shortcode_tag( ).../shortcodes.php:273
151.61467749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_conditions' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 670
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
31.06647193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
41.07197197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
51.61137718072get_template_part( ).../page.php:28
61.61137718648locate_template( ).../general-template.php:206
71.61137718776load_template( ).../template.php:720
81.61147719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
91.61267736264the_content( ).../content-page.php:22
101.61297736512apply_filters( ).../post-template.php:256
111.61297736912WP_Hook->apply_filters( ).../plugin.php:205
121.61447742440do_shortcode( ).../class-wp-hook.php:310
131.61457748496preg_replace_callback ( ).../shortcodes.php:273
141.61457749120do_shortcode_tag( ).../shortcodes.php:273
151.61467749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 671
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
31.06647193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
41.07197197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
51.61137718072get_template_part( ).../page.php:28
61.61137718648locate_template( ).../general-template.php:206
71.61137718776load_template( ).../template.php:720
81.61147719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
91.61267736264the_content( ).../content-page.php:22
101.61297736512apply_filters( ).../post-template.php:256
111.61297736912WP_Hook->apply_filters( ).../plugin.php:205
121.61447742440do_shortcode( ).../class-wp-hook.php:310
131.61457748496preg_replace_callback ( ).../shortcodes.php:273
141.61457749120do_shortcode_tag( ).../shortcodes.php:273
151.61467749120bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'residual' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 672
Call Stack
#TimeMemoryFunctionLocation
10.0000398656{main}( ).../index.php:0
20.0000398936require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
31.06647193568require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
41.07197197312include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
51.61137718072get_template_part( ).../page.php:28
61.61137718648locate_template( ).../general-template.php:206
71.61137718776load_template( ).../template.php:720
81.61147719088require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
91.61267736264the_content( ).../content-page.php:22
101.61297736512apply_filters( ).../post-template.php:256
111.61297736912WP_Hook->apply_filters( ).../plugin.php:205
121.61447742440do_shortcode( ).../class-wp-hook.php:310
131.61457748496preg_replace_callback ( ).../shortcodes.php:273
141.61457749120do_shortcode_tag( ).../shortcodes.php:273
151.61467749120bicluster_info_shortcode( ).../shortcodes.php:433
ID:
# Conditions:
# Genes:
Residual:

Bicluster Motifs

Bicluster Genes

  • Rv0543c
  • Rv0632c
  • Rv0954
  • Rv1093
  • Rv1111c
  • Rv1484
  • Rv1597
  • Rv1789
  • Rv1821
  • Rv1887
  • Rv2144c
  • Rv2536
  • Rv2733c
  • Rv2970c

Bicluster Conditions

  • MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1
  • MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
  • NRP.Day6..2
  • NRP.Day20..1
  • NRP.Day20..2
  • pH4.8vspH6.8..2h.
  • pH4.8vspH6.8..2h.A
  • pH4.8vspH6.8..4h.A
  • pH4.8vspH6.8..4h.B
  • pH4.8vspH6.8..5.5h.
  • pH5.2vspH6.8..2h.
  • pH5.6vspH6.8..2h.
  • pH5.6vspH6.8..7h.
  • X4mM.H2O2vsctrl..1h.
  • X4mM.H2O2vsctrl..2h.
  • X4mM.H2O2vsctrl..2h.A
  • X4mM.H2O2.ctrl..2h...1
  • X4mM.H2O2.ctrl..2h...2
  • X4mM.H2O2.ctrl..4h...1
  • X4mM.H2O2vsctrl..4h.
  • H37Rv.hypoxia.4hr.rep.4
  • H37Rv.hypoxia.4hr.rep.7
  • H37Rv.hypoxia.8hr.rep.1
  • H37Rv.hypoxia.8hr.rep.2
  • H37Rv.hypoxia.12hr.rep.1
  • H37Rv.hypoxia.12hr.rep.2
  • H37Rv.hypoxia.1.day.rep.3
  • H37Rv.hypoxia.1.day.rep.5
  • H37Rv.hypoxia.1.day.rep.7
  • H37Rv.hypoxia.1.day.rep.9
  • H37Rv.hypoxia.4.day.rep.1
  • H37Rv.hypoxia.4.day.rep.6
  • H37Rv.hypoxia.7.day.rep.4
  • H37Rv.hypoxia.7.day.rep.6
  • H37Rv.hypoxia.7.day.rep.7
  • H37Rv.diamide.1h.rep.1
  • H37Rv.diamide.1h.rep.2
  • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
  • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2
  • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.3
  • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
  • CHP_25uM_24h_01
  • Mtb.Erdman.strain.200.ppm.CO.rep.1
  • Mtb.Erdman.strain.200.ppm.CO.rep.2
  • Mtb.response.to.pH.5.5..6.replicates.
  • Mtb.response.to.pH.6.5..6.replicates.
  • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.1
  • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.2
  • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.3
  • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
  • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.6
  • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.2
  • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.3
  • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.4
  • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.5
  • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.2
  • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.3
  • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.6
  • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.2
  • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.3
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.1
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.6
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.1
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.3
  • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.3
  • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.4
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.1
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.2
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.3
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.4
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.5
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.6
  • SG2.B0_N02A09c3
  • SG2.D0_N02A01c5
  • SG6.H0_N5A03cy.5
  • SG7.BT0_N11A02cy.5
  • SG7.DT0_N11A04cy.5
  • SG8.A.Day.0.pre_fix_N37A04cy.5
  • SG8.B.Day.0.pre_N37A12cy.3
  • SG8.C.Day.0.post_N27A08cy.3
  • SG8.D.Day.0.pre_N27A10cy.3
  • SG8.C.Day.0.post_N37A10cy.5
  • SG8.D.Day.0.post_N27A11cy.3
  • SG.ISB.3.0A_N30A01cy.3
  • SG.ISB.3.0C_N30A02cy.3
  • SG8.D.Day.1_N27A12cy.3
  • SG8.B.Day.1_N37A05cy.5
  • SG8.A.Day.1_fix_N37A03cy.5
  • SG7.DT1_N11A08cy.5
  • SG7.BT1_N11A06cy.5
  • SG6_B1_N7A11cy.5
  • SG6.D1_N5A05cy.5
  • SG2.B1_N02A10c3
  • SG2.A1_N02A02c3
  • SG8.C.Day.2_N37A12cy.5
  • SG8.B.Day.2_N37A06cy.5
  • SG2.D2_N02A03c5
  • SG8.A.Day.3_N37A09cy.3
  • SG2.A3_N02A04c3
  • SG2.B3_N02A12c3
  • SG2.D3_N02A04c5
  • SG2.B5_N02A09c5
  • SG2.D5_N02A05c5
  • SG2.D7_N02A06c5
  • SG2.B7_N02A10c5
  • SG2.A7_N02A06c3
  • SG6D.T7_N11A02cy.3
  • SG6_B7_N7A12cy.5
  • SG6_A7_N7A12cy.3
  • SG7.T7C_N11A10cy.5
  • SG7.T7D_N11A11cy.5
  • SG8.B.Day.7_N37A09cy.5
  • SG8.A.Day.7_N37A11cy.3
  • SG12.C0_N32A05cy.5
  • SG12.B2_N32A11cy.3
  • SG12.A4_N32A04cy.3
  • SG12.C4_N32A08cy.5
  • SG12.A6_N32A05cy.3
  • SG12.B6_N32A01cy.5
  • SG12.A8_N32A06cy.3
  • SG12.B8_N32A02cy.5
  • SG12.C8_N32A10cy.5
  • SG12.C24_N32A11cy.5
  • SG12.B24_N32A03cy.5
  • SG12.A24_N32A07cy.3
  • SG2.D8_N02A07c5
  • SG6D.T8_N11A03cy.3
  • SG6.D8_N5A09cy.5
  • SG6.C8_N5A08cy.5
  • SG6.B8_N5A07cy.5
  • SG6.A8_N5A06cy.5
  • SG7.T8A_N11A05cy.3
  • SG7.T8D_N11A08cy.3
  • SG.ISB.3.8A_N30A04cy.5
  • SG.ISB.3.8B_N30A05cy.3
  • SG.ISB.3.8C_N30A05cy.5
  • SG.ISB.3.8D_N30A06cy.3
  • SG6.D11_N8A09cy.5
  • SG6.A11_N5A10cy.5
  • SG7.T12D_N11A12cy.3
  • SG7.T12B_N11A10cy.3
  • SG7.T12A_N11A09cy.3
  • SG12.B120_N32A04cy.5
  • SG12.A120_N32A08cy.3
  • SG.ISB.3.12A_N30A06cy.5
  • SG.ISB.3.12D_N30A08cy.3
  • SG6.A14_N8A10cy.5
  • SG6D.T14_N11A04cy.3
  • WT_140mM_NaCl_Rep1
  • WT_140mM_NaCl_Rep3
  • A00470_Q3_t90_diamide
  • A00436_Q3_t90_diamide