Bicluster

ID: 552f1701b744335b89d4b528
# Conditions: 216
# Genes: 24
Residual: 0.4985741115194

Bicluster Motifs

Bicluster Genes

  • Rv0482
  • Rv0547c
  • Rv0688
  • Rv0760c
  • Rv0782
  • Rv0809
  • Rv0928
  • Rv0951
  • Rv1015c
  • Rv1379
  • Rv2114
  • Rv2140c
  • Rv2211c
  • Rv2440c
  • Rv2443
  • Rv2603c
  • Rv2907c
  • Rv2909c
  • Rv3011c
  • Rv3216
  • Rv3510c
  • Rv3522
  • Rv3725
  • Rv3747

Bicluster Conditions

  • MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1
  • MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2
  • MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
  • High.iron.wt.vs.low.iron.wt.1a
  • High.iron.wt.vs.low.iron.wt.2a
  • High.iron.wt.vs.low.iron.wt.2b
  • High.iron.wt.vs.low.iron.wt.3a
  • High.iron.wt.vs.low.iron.wt.3b
  • H37Rv.hypoxia.2hr.rep.1
  • H37Rv.hypoxia.2hr.rep.2
  • H37Rv.hypoxia.2hr.rep.5
  • NRP.Day8..1
  • NRP.Day8..2
  • NRP.Day8..3
  • NRP.Day10..3
  • NRP.Day12..1
  • NRP.Day12..2
  • NRP.Day14..2
  • NRP.Day14..4
  • NRP.Day14..5
  • NRP.Day14..7
  • NRP.Day14..8
  • NRP.Day14..9
  • NRP.Day20..1
  • NRP.Day30..1
  • pH4.8vspH6.8..2h.
  • pH4.8vspH6.8..4h.
  • pH4.8vspH6.8..4h.A
  • pH4.8vspH6.8..4h.B
  • pH4.8vspH6.8..4h.C
  • pH4.8vspH6.8..5.5h.
  • pH4.8vspH6.8..6h.
  • pH4.8vspH6.8..7h.
  • pH5.2vspH6.8..16h.
  • pH5.6vspH6.8..4h.
  • pH5.6vspH6.8..11h.
  • pH5.6vspH6.8..16h.
  • X4mM.H2O2vsctrl..2h.
  • X4mM.H2O2vsctrl..2h.A
  • X4mM.H2O2.ctrl..2h...1
  • X4mM.H2O2.ctrl..4h...1
  • X4mM.H2O2.ctrl..4h...2
  • H2O2.4mM.vs.ctrl.12h.1
  • UV.20J.vs.ctrl.8h.1
  • X40mJ.UV.ctrl..6h.
  • UV.40J.vs.ctrl.8h.1
  • X60J.UV.ctrl..2h.
  • H37Rv.hypoxia.1.day.rep.3
  • H37Rv.hypoxia.4.day.rep.1
  • H37Rv.hypoxia.4.day.rep.4
  • H37Rv.hypoxia.7.day.rep.3
  • H37Rv.diamide.1h.rep.2
  • H37Rv.diamide.1h.rep.6
  • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
  • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.3
  • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
  • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
  • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
  • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
  • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
  • CHP_25uM_1h_01
  • CHP_25uM_2h_01
  • Starvation_1254_OA50_12h_01
  • Starvation_1254_OA50_12h_02
  • Starvation_1254_OA50_12h_03
  • Starvation_1254_OA50_12h_04
  • Starvation_1254_OA50_24h_01
  • Starvation_1254_OA50_24h_02
  • Starvation_1254_OA50_24h_03
  • Starvation_1254_OA50_3d_01
  • Starvation_1254_OA50_3d_02
  • Starvation_1254_OA50_3d_04
  • Starvation_1254_OA50_5d_01
  • Starvation_1254_OA50_5d_02
  • Starvation_1254_OA50_5d_03
  • Starvation_1254_OA50_5d_04
  • Starvation_1254_OA50_6h_01
  • Starvation_1254_OA50_6h_02
  • Starvation_1254_OA50_6h_03
  • Starvation_1254_OA50_6h_04
  • Starvation_OA50_24h_01
  • Starvation_OA50_24h_02
  • Starvation_OA50_6h_02
  • Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
  • H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Mtb.response.to.pH.5.5..6.replicates.
  • Mtb.response.to.pH.6.5..6.replicates.
  • BCG.2hr.phagosomal.profile
  • M..tuberculosis.CDC1551.2hr.phagosome.expression.profile
  • M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
  • MTB.in.Wild.type.macrophages.for.4hrs
  • MTB.in.Wild.type.macrophages.for.48hrs
  • MTB.in.Wild.type.macrophages...IFNg.for.4hrs
  • MTB.in.Wild.type.macrophages...IFNg.for.48hrs
  • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.1
  • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.2
  • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.3
  • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.4
  • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
  • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.6
  • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.2
  • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.3
  • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.4
  • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.5
  • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.6
  • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.1
  • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.3
  • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.4
  • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.5
  • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.1
  • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.2
  • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.3
  • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.5
  • MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.6
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.1
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.2
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.4
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.6
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.1
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.2
  • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.3
  • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.1
  • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.2
  • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.3
  • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.4
  • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.2
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.4
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.5
  • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.6
  • Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
  • Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
  • Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
  • Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
  • Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
  • Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
  • Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
  • Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
  • Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
  • Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
  • Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
  • Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
  • SG2.B0_N02A09c3
  • SG2.D0_N02A01c5
  • SG6.H0_N5A03cy.5
  • SG6_A0_N7A10cy.3
  • SG6_B0_N7A10cy.5
  • SG8.B.Day.0.pre_N37A12cy.3
  • SG7.AT1_N11A05cy.5
  • SG2.D1_N02A02c5
  • SG2.B1_N02A10c3
  • SG2.A1_N02A02c3
  • SG8.C.Day.2_N37A12cy.5
  • SG2.D2_N02A03c5
  • SG2.D3_N02A04c5
  • SG2.B5_N02A09c5
  • SG2.B7_N02A10c5
  • SG2.A7_N02A06c3
  • SG6_B7_N7A12cy.5
  • SG6_A7_N7A12cy.3
  • SG7.T7C_N11A10cy.5
  • SG7.T7D_N11A11cy.5
  • SG.ISB.3.7A_N30A02cy.5
  • SG.ISB.3.7C_N30A03cy.5
  • SG12.C0_N32A05cy.5
  • SG12.A0_N32A01cy.3
  • SG12.B2_N32A11cy.3
  • SG12.A4_N32A04cy.3
  • SG12.C6_N32A09cy.5
  • SG12.B8_N32A02cy.5
  • SG12.B24_N32A03cy.5
  • SG2.D8_N02A07c5
  • SG6D.T8_N11A03cy.3
  • SG6.C8_N5A08cy.5
  • SG7.T8C_N11A07cy.3
  • SG7.T8D_N11A08cy.3
  • SG.ISB.3.8A_N30A04cy.5
  • SG6.D11_N8A09cy.5
  • SG6.C11_N5A12cy.5
  • SG6.B11_N5A11cy.5
  • SG12.A120_N32A08cy.3
  • SG.ISB.3.12C_N30A07cy.5
  • SG.ISB.3.12D_N30A08cy.3
  • SG6.A14_N8A10cy.5
  • SG6D.T14_N11A04cy.3
  • WT_140mM_NaCl_Rep1
  • WT_140mM_NaCl_Rep2
  • WT_140mM_NaCl_Rep4
  • A00470_Q1_t30_diamide
  • A00437_Q3_t90_diamide
  • A00436_Q1_t30_diamide
  • A00436_Q2_t60_diamide
  • Rif.0.5ug.mL.vsDMSO.2.5h
  • Rif.0.5ug.mL.vsDMSO.2.5hA
  • Rif.5ug.mL.vsDMSO.2.5h
  • Rif.5ug.mL.vsDMSO.2.5hA
  • X0.1ug.mL.RifpvsEtOH..6h
  • X0.1ug.mL.RifpvsEtOH..6hA
  • X0.5ug.mLRifapentinevsEtOH.6h
  • X0.5ug.mLRifapentinevsEtOH.6hA
  • X5ug.ml.Rifampicin.vs.DMSO.2.5hrs