Bicluster – MTB EGRIN 2.0

ID: 552f35f1b744335b89d5856b
# Conditions: 183
# Genes: 25
Residual: 0.48802060868371

Bicluster Motifs

Bicluster Genes

Rv0030
Rv0238
Rv0451c
Rv0468
Rv0615
Rv0645c
Rv0802c
Rv1036c
Rv1151c
Rv1412
Rv1520
Rv1556
Rv1864c
Rv1922
Rv2019
Rv2717c
Rv2776c
Rv3081
Rv3249c
Rv3250c
Rv3251c
Rv3252c
Rv3636
Rv3831
Rv3863

Bicluster Conditions

MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1
H37Rv.hypoxia.2hr.rep.1
H37Rv.hypoxia.2hr.rep.2
H37Rv.hypoxia.2hr.rep.3
H37Rv.hypoxia.2hr.rep.5
H37Rv.hypoxia.2hr.rep.6
NRP.Day6..2
NRP.Day8..1
NRP.Day8..3
NRP.Day10..1
NRP.Day12..1
NRP.Day12..2
NRP.Day14..1
NRP.Day14..2
NRP.Day14..4
NRP.Day14..5
NRP.Day14..6
NRP.Day20..1
NRP.Day20..2
NRP.Day30..1
Mtm.0.2ug.mL.vs.ctrl.8h.1.x
Mtm.0.2ug.mL.vs.ctrl.8h.2.x
Mtm.0.2ug.mL.vs.ctrl.12h.1.x
X4mM.H2O2vsctrl..1h.
X4mM.H2O2vsctrl..2h.
X4mM.H2O2vsctrl..2h.A
X4mM.H2O2.ctrl..2h...2
X4mM.H2O2.ctrl..4h...1
X4mM.H2O2.ctrl..4h...2
X4mM.H2O2vsctrl..4h.
X4mM.H2O2vsctrl..4h.A
H2O2.4mM.vs.ctrl.8h.1
X20mJ.UVvsctrl..6h.
UV.20J.vs.ctrl.8h.1
X25J.UV.ctrl..2h.
X25J.UVvs.ctrl..6h.
X40mJ.UV.ctrl..6h.
UV.40J.vs.ctrl.8h.1
UV.40J.vs.ctrl.12h.1
X60J.UV.ctrl..2h.
H37Rv.hypoxia.8hr.rep.1
H37Rv.hypoxia.1.day.rep.3
H37Rv.hypoxia.1.day.rep.6
H37Rv.hypoxia.1.day.rep.9
H37Rv.hypoxia.4.day.rep.2
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.4.day.rep.6
H37Rv.hypoxia.7.day.rep.1
H37Rv.diamide.1h.rep.1
H37Rv.diamide.1h.rep.2
H37Rv.diamide.1h.rep.3
H37Rv.diamide.1h.rep.4
H37Rv.diamide.1h.rep.5
H37Rv.diamide.1h.rep.6
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.3
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
CHP_25uM_24h_01
CHP_25uM_2h_01
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
BCG.2hr.phagosomal.profile
BCG.24hr.phagosomal.profile
MTB.in.Wild.type.macrophages...IFNg.for.4hrs
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.1
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.2
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.3
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.1
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.2
Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
SG2.A0_N02A01c3
SG2.B0_N02A09c3
SG2.D0_N02A01c5
SG6.H0_N5A03cy.5
SG6_A0_N7A10cy.3
SG6_B0_N7A10cy.5
SG7.BT0_N11A02cy.5
SG7.CT0_N11A03cy.5
SG7.DT0_N11A04cy.5
SG7.DT1_N11A08cy.5
SG7.CT1_N11A07cy.5
SG7.BT1_N11A06cy.5
SG6_B1_N7A11cy.5
SG6_A1_N7A11cy.3
SG6.C1_N5A04cy.5
SG2.D1_N02A02c5
SG2.B1_N02A10c3
SG2.A1_N02A02c3
SG8.A.Day.5_N37A10cy.3
SG8.B.Day.5_N37A08cy.5
SG6D.T7_N11A02cy.3
SG6C.T7_N11A01cy.3
SG6_B7_N7A12cy.5
SG8.A.Day.7_N37A11cy.3
SG.ISB.3.7A_N30A02cy.5
SG.ISB.3.7B_N30A03cy.3
SG.ISB.3.7C_N30A03cy.5
SG.ISB.3.7D_N30A04cy.3
SG12.B0_N32A09cy.3
SG12.A1_N32A02cy.3
SG12.B1_N32A10cy.3
SG12.C1_N32A06cy.5
SG12.A2_N32A03cy.3
SG12.C2_N32A07cy.5
SG12.A4_N32A04cy.3
SG12.B4_N32A12cy.3
SG12.C4_N32A08cy.5
SG12.A6_N32A05cy.3
SG12.B6_N32A01cy.5
SG12.C6_N32A09cy.5
SG12.A8_N32A06cy.3
SG12.B8_N32A02cy.5
SG12.C8_N32A10cy.5
SG12.C24_N32A11cy.5
SG12.B24_N32A03cy.5
SG12.A24_N32A07cy.3
SG2.A8_N02A07c3
SG2.B8_N02A11c5
SG2.D8_N02A07c5
SG.ISB.3.8A_N30A04cy.5
SG.ISB.3.8B_N30A05cy.3
SG.ISB.3.8C_N30A05cy.5
SG.ISB.3.8D_N30A06cy.3
SG2.A9_N02A08c3
SG2.B9_N02A12c5
SG6.D11_N8A09cy.5
SG6.B11_N5A11cy.5
SG6.A11_N5A10cy.5
SG7.T12D_N11A12cy.3
SG7.T12C_N11A11cy.3
SG7.T12B_N11A10cy.3
SG12.C120_N32A12cy.5
SG.ISB.3.12A_N30A06cy.5
SG.ISB.3.12C_N30A07cy.5
SG6.A14_N8A10cy.5
SG6.B14_N8A11cy.5
SG6.C14_N8A12cy.5
A00470_Q2_t60_diamide
A00470_Q3_t90_diamide
A00437_Q2_t60_diamide
A00437_Q3_t90_diamide
A00436_Q1_t30_diamide
A00436_Q2_t60_diamide
Mtm.0.2ug.mL.vs.ctrl.8h.1.y

Column members cluster 552f35f1b744335b89d5856b Species (TODO)

MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1
H37Rv.hypoxia.2hr.rep.1
H37Rv.hypoxia.2hr.rep.2
H37Rv.hypoxia.2hr.rep.3
H37Rv.hypoxia.2hr.rep.5
H37Rv.hypoxia.2hr.rep.6
NRP.Day6..2
NRP.Day8..1
NRP.Day8..3
NRP.Day10..1
NRP.Day12..1
NRP.Day12..2
NRP.Day14..1
NRP.Day14..2
NRP.Day14..4
NRP.Day14..5
NRP.Day14..6
NRP.Day20..1
NRP.Day20..2
NRP.Day30..1
Mtm.0.2ug.mL.vs.ctrl.8h.1.x
Mtm.0.2ug.mL.vs.ctrl.8h.2.x
Mtm.0.2ug.mL.vs.ctrl.12h.1.x
X4mM.H2O2vsctrl..1h.
X4mM.H2O2vsctrl..2h.
X4mM.H2O2vsctrl..2h.A
X4mM.H2O2.ctrl..2h...2
X4mM.H2O2.ctrl..4h...1
X4mM.H2O2.ctrl..4h...2
X4mM.H2O2vsctrl..4h.
X4mM.H2O2vsctrl..4h.A
H2O2.4mM.vs.ctrl.8h.1
X20mJ.UVvsctrl..6h.
UV.20J.vs.ctrl.8h.1
X25J.UV.ctrl..2h.
X25J.UVvs.ctrl..6h.
X40mJ.UV.ctrl..6h.
UV.40J.vs.ctrl.8h.1
UV.40J.vs.ctrl.12h.1
X60J.UV.ctrl..2h.
H37Rv.hypoxia.8hr.rep.1
H37Rv.hypoxia.1.day.rep.3
H37Rv.hypoxia.1.day.rep.6
H37Rv.hypoxia.1.day.rep.9
H37Rv.hypoxia.4.day.rep.2
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.4.day.rep.6
H37Rv.hypoxia.7.day.rep.1
H37Rv.diamide.1h.rep.1
H37Rv.diamide.1h.rep.2
H37Rv.diamide.1h.rep.3
H37Rv.diamide.1h.rep.4
H37Rv.diamide.1h.rep.5
H37Rv.diamide.1h.rep.6
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.3
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
CHP_25uM_24h_01
CHP_25uM_2h_01
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
BCG.2hr.phagosomal.profile
BCG.24hr.phagosomal.profile
MTB.in.Wild.type.macrophages...IFNg.for.4hrs
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.1
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.2
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.3
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.1
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.2
Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
SG2.A0_N02A01c3
SG2.B0_N02A09c3
SG2.D0_N02A01c5
SG6.H0_N5A03cy.5
SG6_A0_N7A10cy.3
SG6_B0_N7A10cy.5
SG7.BT0_N11A02cy.5
SG7.CT0_N11A03cy.5
SG7.DT0_N11A04cy.5
SG7.DT1_N11A08cy.5
SG7.CT1_N11A07cy.5
SG7.BT1_N11A06cy.5
SG6_B1_N7A11cy.5
SG6_A1_N7A11cy.3
SG6.C1_N5A04cy.5
SG2.D1_N02A02c5
SG2.B1_N02A10c3
SG2.A1_N02A02c3
SG8.A.Day.5_N37A10cy.3
SG8.B.Day.5_N37A08cy.5
SG6D.T7_N11A02cy.3
SG6C.T7_N11A01cy.3
SG6_B7_N7A12cy.5
SG8.A.Day.7_N37A11cy.3
SG.ISB.3.7A_N30A02cy.5
SG.ISB.3.7B_N30A03cy.3
SG.ISB.3.7C_N30A03cy.5
SG.ISB.3.7D_N30A04cy.3
SG12.B0_N32A09cy.3
SG12.A1_N32A02cy.3
SG12.B1_N32A10cy.3
SG12.C1_N32A06cy.5
SG12.A2_N32A03cy.3
SG12.C2_N32A07cy.5
SG12.A4_N32A04cy.3
SG12.B4_N32A12cy.3
SG12.C4_N32A08cy.5
SG12.A6_N32A05cy.3
SG12.B6_N32A01cy.5
SG12.C6_N32A09cy.5
SG12.A8_N32A06cy.3
SG12.B8_N32A02cy.5
SG12.C8_N32A10cy.5
SG12.C24_N32A11cy.5
SG12.B24_N32A03cy.5
SG12.A24_N32A07cy.3
SG2.A8_N02A07c3
SG2.B8_N02A11c5
SG2.D8_N02A07c5
SG.ISB.3.8A_N30A04cy.5
SG.ISB.3.8B_N30A05cy.3
SG.ISB.3.8C_N30A05cy.5
SG.ISB.3.8D_N30A06cy.3
SG2.A9_N02A08c3
SG2.B9_N02A12c5
SG6.D11_N8A09cy.5
SG6.B11_N5A11cy.5
SG6.A11_N5A10cy.5
SG7.T12D_N11A12cy.3
SG7.T12C_N11A11cy.3
SG7.T12B_N11A10cy.3
SG12.C120_N32A12cy.5
SG.ISB.3.12A_N30A06cy.5
SG.ISB.3.12C_N30A07cy.5
SG6.A14_N8A10cy.5
SG6.B14_N8A11cy.5
SG6.C14_N8A12cy.5
A00470_Q2_t60_diamide
A00470_Q3_t90_diamide
A00437_Q2_t60_diamide
A00437_Q3_t90_diamide
A00436_Q1_t30_diamide
A00436_Q2_t60_diamide
Mtm.0.2ug.mL.vs.ctrl.8h.1.y