Bicluster

Bicluster Motifs

Bicluster Genes

• Rv0001
• Rv1215c
• Rv1223
• Rv1771
• Rv2114
• Rv3121
• Rv3479
• Rv3492c
• Rv3493c
• Rv3495c
• Rv3496c
• Rv3497c
• Rv3498c
• Rv3499c
• Rv3501c
• Rv3509c
• Rv3719
• Rv3720
• Rv3781
• Rv3783
• Rv3853
• Rv3909
• Rv0001

Bicluster Conditions

• H37Rv..7H9.roll.replicate.4.x
• H37Rv..7H9.shake.replicate.1
• H37Rv..7H9.shake.replicate.2
• H37Rv..7H9.shake.replicate.3
• H37Rv..Dubos.media.replicate.1
• H37Rv..Dubos.media.replicate.2
• H37Rv..Dubos.media.replicate.4
• H37Rv..Sauton.s.media.replicate.1
• H37Rv..Sauton.s.media.replicate.3
• H37Rv..7H9.roll.replicate.3.y
• H37Rv.Day.0.rep.1
• MTB1254.Day.0.rep.1
• MTB1254.Day.0.rep.2
• MTB1254.Day.0.rep.3
• High.iron.wt.vs.low.iron.wt.2a
• High.iron.wt.vs.low.iron.wt.2b
• High.iron.wt.vs.low.iron.wt.3a
• High.iron.wt.vs.low.iron.wt.3b
• MTB1254.vs..MTB1254.rep1
• MTB1254.vs..MTB1254.rep3
• MTB1254.vs..MTB1254.rep4
• MTB1254.vs..MTB1254.rep5
• MTB1254.vs..MTB1254.rep6
• H37Rv.Day.0.rep.2
• H37Rv.Day.0.rep.3
• H37Rv.Day6.1
• H37Rv.Day6.2
• H37Rv.Day6.3
• H37Rv.Day8.1
• H37Rv.Day8.2
• H37Rv.Day8.3
• H37Rv.Day14.1
• H37Rv.Day24.3
• WT.t.6h.WT.t.0h..1
• WT.t.0h.WT.t.6h..2
• pH4.8vspH6.8..2h.A
• pH4.8vspH6.8..2h.B
• pH4.8vspH6.8..4h.A
• pH4.8vspH6.8..4h.B
• pH4.8vspH6.8..5.5h.
• pH4.8vspH6.8..6h.
• pH5.2vspH6.8..5h.
• pH5.2vspH6.8..10.5h.
• pH5.6vspH6.8..4h.
• pH5.6vspH6.8..11h.
• Mtm.0.2ug.mL.vs.ctrl.8h.1.x
• Mtm.0.2ug.mL.vs.ctrl.8h.2.x
• Mtm.0.2ug.mL.vs.ctrl.12h.1.x
• AA_10uM_10.min_01
• AA_30uM_10.min_05
• AA_30uM_10.min_06
• AA_30uM_10.min_07
• AA_30uM_1h_02
• AA_30uM_1h_05
• AA_30uM_1h_07
• AA_30uM_24h_02
• AA_30uM_24h_03
• AA_30uM_24h_04
• AA_30uM_2h_01
• AA_30uM_2h_04
• AA_30uM_2h_05
• AA_30uM_2h_07
• AA_30uM_30min_02
• AA_30uM_30min_04
• AA_30uM_30min_08
• AA_30uM_4h_01
• AA_30uM_4h_02
• AA_30uM_4h_03
• AA_30uM_4h_04
• AA_30uM_4h_05
• AA_30uM_4h_06
• AA_30uM_4h_07
• AA_30uM_4h_08
• AA_30uM_4h_09
• AA_3uM_10.min_01
• AA_60uM_24h_01
• AA_60uM_24h_02
• aceatate.induction.1
• aceatate.induction.3
• Acetate.3mM.10m.01
• Acetate.3mM.10m.02
• Acetate.3mM.10m.03
• Acetate.3mM.10m.05
• Acetate.3mM.10m.06
• Acetate.3mM.10m.07
• Acetate.3mM.10m_04
• Acetate.3mM.2h.02
• Acetate.3mM.2h.03
• Acetate.3mM.2h.04
• Acetate.3mM.2h.05
• Acetate.3mM.2h.06
• Acetate.3mM.30m.01
• Acetate.3mM.30m.02
• Acetate.3mM.30m.03
• Acetate.3mM.30m.08
• Acetate.3mM.60m.01
• Acetate.3mM.60m.02
• Acetate.3mM.60m.03
• L2A_30uM_10min_02
• L2A_30uM_10min_04
• L2A_30uM_10min_06
• L2A_30uM_10min_07
• L2A_30uM_1h_02
• L2A_30uM_1h_07
• L2A_30uM_2h_01
• L2A_30uM_2h_05
• L2A_30uM_30min_02
• L2A_30uM_4h_03
• L2A_30uM_4h_04
• L2A_30uM_4h_05
• L2A_30uM_4h_06
• L2A_30uM_4h_07
• L2A_30uM_4h_08
• LAA_50uM_10min_01
• OA_50uM_10min_01
• OA_50uM_10min_07
• OA_50uM_1h_01
• OA_50uM_1h_02
• OA_50uM_1h_06
• OA_50uM_1h_07
• OA_50uM_1h_08
• OA_50uM_1h_09
• OA_50uM_24h_01
• OA_50uM_24h_02
• OA_50uM_24h_03
• OA_50uM_24h_04
• OA_50uM_24h_05
• OA_50uM_24h_06
• OA_50uM_2h_01
• OA_50uM_2h_02
• OA_50uM_2h_04
• OA_50uM_2h_08
• OA_50uM_30min_01
• OA_50uM_30min_03
• OA_50uM_30min_09
• OA_50uM_4h_01
• OA_50uM_4h_04
• OA_50uM_4h_05
• OA_50uM_4h_07
• PA_50uM_10.min_03
• PA_50uM_10min_04
• PA_50uM_10min_06
• PA_50uM_10min_07
• PA_50uM_10min_10
• PA_50uM_12h_03
• PA_50uM_1h_01
• PA_50uM_1h_02
• PA_50uM_1h_05
• PA_50uM_1h_07
• PA_50uM_1h_08
• PA_50uM_1h_12
• PA_50uM_24h_02
• PA_50uM_24h_03
• PA_50uM_24h_06
• PA_50uM_24h_07
• PA_50uM_2h_01
• PA_50uM_2h_02
• PA_50uM_2h_03
• PA_50uM_2h_04
• PA_50uM_2h_06
• PA_50uM_2h_07
• PA_50uM_30.min_04
• PA_50uM_30.min_05
• PA_50uM_30min_08
• PA_50uM_3d_01
• PA_50uM_3d_02
• PA_50uM_3d_03
• PA_50uM_3d_04
• PA_50uM_3d_05
• PA_50uM_3d_06
• PA_50uM_4h
• PA_50uM_4h_02
• Starvation_1254_OA50_12h_04
• Starvation_1254_OA50_24h_01
• Starvation_1254_OA50_24h_03
• Starvation_1254_OA50_6h_01
• Starvation_1254_OA50_6h_03
• Starvation_1254_OA50_6h_04
• Starvation_1254_PA50_24h_01
• Starvation_1254_PA50_24h_02
• Starvation_1254_PA50_6h_02
• Starvation_OA50_24h_02
• Starvation_OA50_6h_01
• CDC1551.Ctrl.vs.H37Rv.rep.2
• CDC1551.Ctrl.vs.H37Rv.rep.3
• Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
• CDC1551.ctrl.vs.ctrl.at.0.hr.rep.1
• Mtb.Erdman.strain.20.ppm.CO.rep.1
• Mtb.Erdman.strain.20.ppm.CO.rep.2
• Mtb.Erdman.strain.200.ppm.CO.rep.1
• Mtb.Erdman.strain.2000.ppm.CO.rep.2
• M..tuberculosis.CDC1551.2hr.phagosome.expression.profile
• MTB.in.Wild.type.macrophages.for.4hrs
• MTB.in.Wild.type.macrophages.for.48hrs
• MTB.in.Wild.type.macrophages...IFNg.for.4hrs
• MTB.in.Wild.type.macrophages...IFNg.for.24hrs
• MTB.in.Wild.type.macrophages...IFNg.for.48hrs
• Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
• Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
• Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
• Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
• Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
• Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
• Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
• Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
• Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
• Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
• Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
• SS_A1_RV.1
• SS_A1_RV.2
• SS_A1_RV.3
• WT_140mM_NaCl_Rep2
• WT_140mM_NaCl_Rep3
• wild.type..mc.2.6020...biological.rep1
• H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep.1
• H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep2
• H37Rv.Ctrl.vs.10.ug.ml.garlic.extract.6hrs