Bicluster

Bicluster Motifs

Bicluster Genes

• Rv0367c
• Rv0653c
• Rv0795
• Rv1424c
• Rv1763
• Rv1950c
• Rv2105
• Rv2168c
• Rv2278
• Rv2354
• Rv2480c
• Rv2648
• Rv2815c
• Rv3184
• Rv3186
• Rv3203
• Rv3204
• Rv3263
• Rv3325
• Rv3474
• Rv3681c

Bicluster Conditions

• H37Rv..7H9.roll.replicate.1.x
• H37Rv..7H9.roll.replicate.3.x
• H37Rv..7H9.roll.replicate.4.x
• H37Rv..7H9.shake.replicate.3
• H37Rv..7H9.shake.replicate.4
• H37Rv..Dubos.media.replicate.1
• H37Rv..Dubos.media.replicate.2
• H37Rv..Dubos.media.replicate.3
• H37Rv..Dubos.media.replicate.4
• H37Rv..Sauton.s.media.replicate.1
• H37Rv..Sauton.s.media.replicate.2
• H37Rv..Sauton.s.media.replicate.3
• H37Rv..Sauton.s.media.replicate.4
• H37Rv..Youman.media.replicate.2
• H37Rv..Youman.media.replicate.4
• H37Rv..7H9.roll.replicate.4.y
• MTB1254.Day.0.rep.1
• MTB1254.Day.0.rep.2
• MTB1254.Day.0.rep.3
• High.iron.wt.vs.low.iron.wt.1a
• High.iron.wt.vs.low.iron.wt.2a
• High.iron.wt.vs.low.iron.wt.2b
• High.iron.wt.vs.low.iron.wt.3b
• MTB1254.vs..MTB1254.rep3
• MTB1254.vs..MTB1254.rep5
• H37Rv.Day.0.rep.3
• H37Rv.Day6.3
• H37Rv.Day8.1
• H37Rv.Day8.2
• H37Rv.Day8.3
• H37Rv.Day14.1
• H37Rv.Day14.3
• H37Rv.Day24.3
• H37Rv.Day60.3
• pH4.8vspH6.8..2h.
• pH4.8vspH6.8..2h.A
• pH4.8vspH6.8..4h.
• pH4.8vspH6.8..4h.C
• pH4.8vspH6.8..5h.
• pH4.8vspH6.8..5.5h.
• pH5.2vspH6.8..2h.
• pH5.2vspH6.8..5.5h.
• pH5.2vspH6.8..10.5h.
• pH5.2vspH6.8..11h.
• pH5.6vspH6.8..2h.
• pH5.6vspH6.8..2h.A
• pH5.6vspH6.8..4h.B
• pH5.6vspH6.8..7h.
• pH5.6vspH6.8..11h.
• pH5.6vspH6.8..16h.
• Mtm.0.2ug.mL.vs.ctrl.8h.1.x
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
• AA_30uM_10.min_05
• AA_30uM_10m_01
• AA_30uM_10min_03
• AA_30uM_1h_01
• AA_30uM_1h_03
• AA_30uM_1h_04
• AA_30uM_1h_05
• AA_30uM_1h_06
• AA_30uM_1h_07
• AA_30uM_1h_08
• AA_30uM_24h_02
• AA_30uM_24h_04
• AA_30uM_2h_05
• AA_30uM_2h_07
• AA_30uM_30min_01
• AA_30uM_30min_02
• AA_30uM_30min_06
• AA_30uM_30min_07
• AA_30uM_30min_09
• AA_30uM_4h_08
• AA_3uM_10min_02
• aceatate.induction.1
• Acetate.3mM.10m.01
• Acetate.3mM.10m_04
• Acetate.3mM.2h.03
• Acetate.3mM.30m.01
• Acetate.3mM.30m.04
• Acetate.3mM.30m.06
• Acetate.3mM.60m.02
• Acetate.3mM.60m.04
• L2A_30uM_10min_03
• L2A_30uM_10min_06
• L2A_30uM_10min_07
• L2A_30uM_10min_08
• L2A_30uM_1h_01
• L2A_30uM_1h_02
• L2A_30uM_1h_06
• L2A_30uM_1h_08
• L2A_30uM_2h_03
• L2A_30uM_2h_04
• L2A_30uM_30min_01
• L2A_30uM_30min_02
• L2A_30uM_30min_05
• L2A_30uM_4h_03
• L2A_30uM_4h_04
• L2A_30uM_4h_06
• L2A_30uM_4h_07
• L2A_30uM_4h_08
• LAA_50uM_10min_01
• OA_50uM_10min_02
• OA_50uM_10min_03
• OA_50uM_10min_05
• OA_50uM_10min_06
• OA_50uM_1h_01
• OA_50uM_1h_02
• OA_50uM_1h_07
• OA_50uM_1h_10
• OA_50uM_2h_02
• OA_50uM_2h_04
• OA_50uM_2h_07
• OA_50uM_2h_09
• OA_50uM_30min_01
• OA_50uM_30min_07
• OA_50uM_30min_08
• OA_50uM_30min_09
• OA_50uM_4h_03
• OA_50uM_4h_07
• PA_100uM_24h_01
• PA_100uM_2h_04
• PA_10uM_10.min_01
• PA_10uM_10min_02
• PA_50uM_10.min_02
• PA_50uM_10.min_03
• PA_50uM_10min_05
• PA_50uM_10min_06
• PA_50uM_10min_07
• PA_50uM_10min_09
• PA_50uM_12h_01
• PA_50uM_12h_02
• PA_50uM_12h_03
• PA_50uM_12h_04
• PA_50uM_12h_05
• PA_50uM_12h_06
• PA_50uM_1h_02
• PA_50uM_1h_03
• PA_50uM_1h_06
• PA_50uM_1h_09
• PA_50uM_24h_01
• PA_50uM_24h_02
• PA_50uM_24h_03
• PA_50uM_24h_04
• PA_50uM_24h_06
• PA_50uM_24h_07
• PA_50uM_24h_08
• PA_50uM_24h_09
• PA_50uM_24h_10
• PA_50uM_2h_02
• PA_50uM_2h_03
• PA_50uM_2h_04
• PA_50uM_2h_05
• PA_50uM_2h_06
• PA_50uM_2h_07
• PA_50uM_30.min_04
• PA_50uM_30.min_05
• PA_50uM_30min_02
• PA_50uM_30min_08
• PA_50uM_3d_03
• PA_50uM_4h
• PA_50uM_4h_01
• PA_50uM_4h_02
• PA_50uM_4h_03
• PA_50uM_4h_04
• PA_50uM_4h_05
• PA_50uM_4h_06
• PA_50uM_4h_07
• PA_50uM_8h_01
• PA_50uM_8h_02
• PA_50uM_8h_03
• PA_50uM_8h_04
• PA_50uM_8h_05
• PA_50uM_8h_06
• Starvation_1254_OA50_12h_01
• Starvation_1254_OA50_12h_02
• Starvation_1254_OA50_12h_03
• Starvation_1254_OA50_12h_04
• Starvation_1254_OA50_24h_03
• Starvation_1254_OA50_5d_01
• Starvation_1254_OA50_5d_02
• Starvation_1254_OA50_5d_04
• Starvation_1254_OA50_6h_01
• Starvation_1254_OA50_6h_02
• Starvation_1254_OA50_6h_03
• Starvation_1254_OA50_6h_04
• Starvation_1254_PA50_24h_02
• Starvation_1254_PA50_24h_04
• Starvation_1254_PA50_6h_01
• Starvation_1254_PA50_6h_02
• Starvation_1254_PA50_6h_03
• Starvation_1254_PA50_6h_04
• Starvation_OA50_24h_02
• Starvation_OA50_6h_01
• Starvation_OA50_6h_02
• Starvation_OA50_6h_04
• CDC1551.Ctrl.vs.H37Rv.rep.2
• Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
• CDC1551.ctrl.vs.ctrl.at.0.hr.rep.1
• Mtb.Erdman.strain.20.ppm.CO.rep.2
• Mtb.Erdman.strain.200.ppm.CO.rep.2
• Mtb.response.to.pH.6.5..6.replicates.
• MTB.in.Wild.type.macrophages.for.4hrs
• MTB.in.Wild.type.macrophages.for.24hrs
• MTB.in.Wild.type.macrophages...IFNg.for.24hrs
• Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
• Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
• Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
• Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
• Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
• Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
• Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
• Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
• Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
• Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
• SS_A1_RV.3
• Mtm.0.2ug.mL.vs.ctrl.8h.1.y
• Mtm.0.2ug.mL.vs.ctrl.8h.2.y
• Mtm.0.2ug.mL.vs.ctrl.12h.1.y
• H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep.1
• H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep2
• H37Rv.Ctrl.vs.5.ug.ml.garlic.extract.6hrs
• H37Rv.Ctrl.vs.10.ug.ml.garlic.extract.6hrs